protocols::dna_dock::DNAClashCheckFilter Class Reference

#include <DNAClashCheckFilter.hh>

Inheritance diagram for protocols::dna_dock::DNAClashCheckFilter:

Public Types
typedef protocols::filters::Filter	Super
typedef protocols::filters::Filter	Filter
typedef protocols::filters::FilterOP	FilterOP
typedef core::Real	Real
typedef core::pose::Pose	Pose
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap

Public Member Functions
	DNAClashCheckFilter ()
	DNAClashCheckFilter (core::Real const fa_rep_thresh, std::string dna_a_path, std::string dna_b_path)
	DNAClashCheckFilter (DNAClashCheckFilter const &rval)
	~DNAClashCheckFilter () override
protocols::filters::FilterOP	clone () const override
protocols::filters::FilterOP	fresh_instance () const override
std::string	name () const override
void	set_fa_rep_thresh (core::Real fa_rep_thresh)
void	set_dna_a_path (std::string dna_a_path)
void	set_dna_b_path (std::string dna_b_path)
core::Real	get_fa_rep_thresh () const
std::string	get_dna_a_path () const
std::string	get_dna_b_path () const
void	parse_my_tag (TagCOP tag, basic::datacache::DataMap &) override
	parse xml More...
bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
	~Filter () override
virtual void	report (std::ostream &, core::pose::Pose const &) const
virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Private Attributes
core::Real	fa_rep_thresh_
std::string	dna_a_path_
std::string	dna_b_path_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef basic::datacache::DataMap protocols::dna_dock::DNAClashCheckFilter::DataMap

typedef protocols::filters::Filter protocols::dna_dock::DNAClashCheckFilter::Filter

typedef protocols::filters::FilterOP protocols::dna_dock::DNAClashCheckFilter::FilterOP

typedef core::pose::Pose protocols::dna_dock::DNAClashCheckFilter::Pose

typedef core::Real protocols::dna_dock::DNAClashCheckFilter::Real

typedef protocols::filters::Filter protocols::dna_dock::DNAClashCheckFilter::Super

typedef utility::tag::TagCOP protocols::dna_dock::DNAClashCheckFilter::TagCOP

Constructor & Destructor Documentation

protocols::dna_dock::DNAClashCheckFilter::DNAClashCheckFilter

(

)

protocols::dna_dock::DNAClashCheckFilter::DNAClashCheckFilter	(	core::Real const	fa_rep_thresh,
		std::string	dna_a_path,
		std::string	dna_b_path
	)

protocols::dna_dock::DNAClashCheckFilter::DNAClashCheckFilter ( DNAClashCheckFilter const &  rval )

default

protocols::dna_dock::DNAClashCheckFilter::~DNAClashCheckFilter ( )

overridedefault

Member Function Documentation

bool protocols::dna_dock::DNAClashCheckFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References core::pose::append_pose_to_pose(), dna_a_path_, dna_b_path_, core::pose::Pose::energies(), core::scoring::fa_rep, fa_rep_thresh_, core::import_pose::PDB_file, core::import_pose::pose_from_file(), core::id::to_string(), core::scoring::Energies::total_energies(), and protocols::TR().

protocols::filters::FilterOP protocols::dna_dock::DNAClashCheckFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

protocols::filters::FilterOP protocols::dna_dock::DNAClashCheckFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

std::string protocols::dna_dock::DNAClashCheckFilter::get_dna_a_path

(

)

const

References dna_a_path_.

std::string protocols::dna_dock::DNAClashCheckFilter::get_dna_b_path

(

)

const

References dna_b_path_.

core::Real protocols::dna_dock::DNAClashCheckFilter::get_fa_rep_thresh

(

)

const

References fa_rep_thresh_.

std::string protocols::dna_dock::DNAClashCheckFilter::name ( ) const

inlineoverridevirtual

Reimplemented from protocols::filters::Filter.

void protocols::dna_dock::DNAClashCheckFilter::parse_my_tag ( TagCOP  tag, basic::datacache::DataMap &    )

overridevirtual

parse xml

Reimplemented from protocols::filters::Filter.

References dna_a_path_, dna_b_path_, and fa_rep_thresh_.

void protocols::dna_dock::DNAClashCheckFilter::set_dna_a_path

(

std::string

dna_a_path

)

References dna_a_path_.

void protocols::dna_dock::DNAClashCheckFilter::set_dna_b_path

(

std::string

dna_b_path

)

References dna_b_path_.

void protocols::dna_dock::DNAClashCheckFilter::set_fa_rep_thresh

(

core::Real

fa_rep_thresh

)

References fa_rep_thresh_.

Member Data Documentation

std::string protocols::dna_dock::DNAClashCheckFilter::dna_a_path_

private

Referenced by apply(), get_dna_a_path(), parse_my_tag(), and set_dna_a_path().

std::string protocols::dna_dock::DNAClashCheckFilter::dna_b_path_

private

Referenced by apply(), get_dna_b_path(), parse_my_tag(), and set_dna_b_path().

core::Real protocols::dna_dock::DNAClashCheckFilter::fa_rep_thresh_

private

Referenced by apply(), get_fa_rep_thresh(), parse_my_tag(), and set_fa_rep_thresh().

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The documentation for this class was generated from the following files:

• src/protocols/dna_dock/DNAClashCheckFilter.hh
• src/protocols/dna_dock/DNAClashCheckFilter.cc