protocols::loop_grower::FragmentExtension Member List

This is the complete list of members for protocols::loop_grower::FragmentExtension, including all inherited members.

apply(core::pose::Pose &pose) override	protocols::loop_grower::FragmentExtension	virtual
assign_incomplete_	protocols::loop_grower::FragmentExtension	private
asymmdump_	protocols::loop_grower::FragmentExtension	private
auto_stop_	protocols::loop_grower::FragmentExtension	private
beamscorecutoff_	protocols::loop_grower::FragmentExtension	private
beamwidth_	protocols::loop_grower::FragmentExtension	private
cbreaks_	protocols::loop_grower::FragmentExtension	private
cen_sf_	protocols::loop_grower::FragmentExtension	private
cenrot_	protocols::loop_grower::FragmentExtension	private
cenrot_sf_	protocols::loop_grower::FragmentExtension	private
chainbreak_	protocols::loop_grower::FragmentExtension	private
checksymm_	protocols::loop_grower::FragmentExtension	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::loop_grower::FragmentExtension	virtual
cluster_fragments(utility::vector1< core::fragment::FragSetOP > &fragments, core::Real fragfilter)	protocols::loop_grower::FragmentExtension
clustercheck_	protocols::loop_grower::FragmentExtension	private
continuous_sheets_	protocols::loop_grower::FragmentExtension	private
continuous_weight_	protocols::loop_grower::FragmentExtension	private
coordfile_	protocols::loop_grower::FragmentExtension	private
create()	protocols::moves::Mover	virtual
debug_	protocols::loop_grower::FragmentExtension	private
direction_	protocols::loop_grower::FragmentExtension	private
dumpbeam_	protocols::loop_grower::FragmentExtension	private
dumperrors_	protocols::loop_grower::FragmentExtension	private
dumpfinalbeam_	protocols::loop_grower::FragmentExtension	private
dumpfragments_	protocols::loop_grower::FragmentExtension	private
dumprms_	protocols::loop_grower::FragmentExtension	private
fa_bonus_	protocols::loop_grower::FragmentExtension	private
fafilter_	protocols::loop_grower::FragmentExtension	private
famin_	protocols::loop_grower::FragmentExtension	private
fastaname_	protocols::loop_grower::FragmentExtension	private
filterbeams_	protocols::loop_grower::FragmentExtension	private
filterprevious_	protocols::loop_grower::FragmentExtension	private
frag_sizes_	protocols::loop_grower::FragmentExtension	private
fragcluster_	protocols::loop_grower::FragmentExtension	private
fragmelt_	protocols::loop_grower::FragmentExtension	private
FragmentExtension()	protocols::loop_grower::FragmentExtension
fragments_	protocols::loop_grower::FragmentExtension	private
fragseq	protocols::loop_grower::FragmentExtension	private
fragtrials_	protocols::loop_grower::FragmentExtension	private
fresh_instance() const override	protocols::loop_grower::FragmentExtension	virtual
fullength_seq_	protocols::loop_grower::FragmentExtension	private
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::loop_grower::FragmentExtension	inlinevirtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
get_unaligned(core::id::SequenceMapping const &seqmap) const	protocols::loop_grower::FragmentExtension
greedy_	protocols::loop_grower::FragmentExtension	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
looporder_	protocols::loop_grower::FragmentExtension	private
master_beam_cutoff_	protocols::loop_grower::FragmentExtension	private
master_beam_width_	protocols::loop_grower::FragmentExtension	private
maxloopsize_	protocols::loop_grower::FragmentExtension	private
minimize_	protocols::loop_grower::FragmentExtension	private
minmelt_	protocols::loop_grower::FragmentExtension	private
montecarlorounds_	protocols::loop_grower::FragmentExtension	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::loop_grower::FragmentExtension	static
name()	protocols::moves::Mover	inlinestatic
native_	protocols::loop_grower::FragmentExtension	private
nativegrow_	protocols::loop_grower::FragmentExtension	private
nfrags_	protocols::loop_grower::FragmentExtension	private
pack_min_cycles_	protocols::loop_grower::FragmentExtension	private
parallelcount_	protocols::loop_grower::FragmentExtension	private
parametercheck_	protocols::loop_grower::FragmentExtension	private
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override	protocols::loop_grower::FragmentExtension	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const override	protocols::loop_grower::FragmentExtension	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::loop_grower::FragmentExtension	static
read_from_file_	protocols::loop_grower::FragmentExtension	private
readbeams_	protocols::loop_grower::FragmentExtension	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
rephasemap_	protocols::loop_grower::FragmentExtension	private
rescorebeams_	protocols::loop_grower::FragmentExtension	private
reset_status()	protocols::moves::Mover
rmscutoff_	protocols::loop_grower::FragmentExtension	private
rmswindow_	protocols::loop_grower::FragmentExtension	private
samplesheets_	protocols::loop_grower::FragmentExtension	private
sc_scale_	protocols::loop_grower::FragmentExtension	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_type(std::string const &setting)	protocols::moves::Mover	inline
sf_	protocols::loop_grower::FragmentExtension	private
sheet_tolerance_	protocols::loop_grower::FragmentExtension	private
sheetbonus_	protocols::loop_grower::FragmentExtension	private
sheetcriteria_	protocols::loop_grower::FragmentExtension	private
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
skeleton_file_	protocols::loop_grower::FragmentExtension	private
steps_	protocols::loop_grower::FragmentExtension	private
storedbeams_	protocols::loop_grower::FragmentExtension	private
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
trackfragments_	protocols::loop_grower::FragmentExtension	private
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
window_dens_weight_	protocols::loop_grower::FragmentExtension	private
writebeams_	protocols::loop_grower::FragmentExtension	private
writelps_	protocols::loop_grower::FragmentExtension	private