StepWiseRNA_PoseSetupFromCommandLine.hh File Reference

#include <protocols/stepwise/modeler/working_parameters/StepWiseWorkingParameters.fwd.hh>
#include <protocols/stepwise/legacy/modeler/rna/StepWiseRNA_PoseSetup.fwd.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/types.hh>
#include <core/pose/Pose.fwd.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::legacy
	protocols::stepwise::legacy::modeler
	protocols::stepwise::legacy::modeler::rna

Functions
void	protocols::stepwise::legacy::modeler::rna::apply_chi_cst (core::pose::Pose &pose, core::pose::Pose const &ref_pose)
std::string	protocols::stepwise::legacy::modeler::rna::get_working_directory ()
utility::vector1< core::Size >	protocols::stepwise::legacy::modeler::rna::get_fixed_res (core::Size const nres)
bool	protocols::stepwise::legacy::modeler::rna::is_nonempty_input_silent_file (std::string const &input_silent_file, std::string const &exit_key_string)
utility::vector1< core::Size >	protocols::stepwise::legacy::modeler::rna::get_input_res (core::Size const nres, std::string const &pose_num)
utility::vector1< std::string >	protocols::stepwise::legacy::modeler::rna::get_silent_file_tags ()
core::scoring::ScoreFunctionOP	protocols::stepwise::legacy::modeler::rna::create_scorefxn ()
stepwise::modeler::working_parameters::StepWiseWorkingParametersOP	protocols::stepwise::legacy::modeler::rna::setup_simple_full_length_rna_working_parameters ()
stepwise::modeler::working_parameters::StepWiseWorkingParametersOP	protocols::stepwise::legacy::modeler::rna::setup_rna_working_parameters (bool check_for_previously_closed_cutpoint_with_input_pose)
void	protocols::stepwise::legacy::modeler::rna::setup_copy_DOF_input (StepWiseRNA_PoseSetupOP &stepwise_rna_pose_setup)
StepWiseRNA_PoseSetupOP	protocols::stepwise::legacy::modeler::rna::setup_pose_setup_class (stepwise::modeler::working_parameters::StepWiseWorkingParametersOP &working_parameters, bool const copy_DOF)
bool	protocols::stepwise::legacy::modeler::rna::get_tag_and_silent_file_for_struct (std::string &swa_silent_file, std::string &out_tag, core::Size const &n, bool const &multiple_shots, std::string const &silent_file)
void	protocols::stepwise::legacy::modeler::rna::ensure_directory_for_out_silent_file_exists ()

Detailed Description

Author

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu