protocols::protein_interface_design::filters::DesignableResiduesFilter Class Reference

#include <DesignableResiduesFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::DesignableResiduesFilter:

Public Member Functions
	DesignableResiduesFilter ()
	default ctor More...
bool	apply (core::pose::Pose const &pose) const override
	Constructor with a single target residue. More...
void	report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...
protocols::filters::FilterOP	clone () const override
protocols::filters::FilterOP	fresh_instance () const override
core::Size	compute (core::pose::Pose const &pose) const
	~DesignableResiduesFilter () override
core::pack::task::TaskFactoryOP	task_factory () const
void	task_factory (core::pack::task::TaskFactoryOP task_factory)
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
core::Size	lower_threshold () const
core::Size	upper_threshold () const
bool	packable () const
bool	designable () const
void	lower_threshold (core::Size const l)
void	upper_threshold (core::Size const u)
void	packable (bool const p)
void	designable (bool const d)
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
	~Filter () override
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Types
typedef protocols::filters::Filter	parent

Private Attributes
core::pack::task::TaskFactoryOP	task_factory_
core::Size	lower_threshold_
core::Size	upper_threshold_
bool	packable_
bool	designable_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef protocols::filters::Filter protocols::protein_interface_design::filters::DesignableResiduesFilter::parent

private

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::DesignableResiduesFilter::DesignableResiduesFilter

(

)

default ctor

protocols::protein_interface_design::filters::DesignableResiduesFilter::~DesignableResiduesFilter ( )

overridedefault

Member Function Documentation

bool protocols::protein_interface_design::filters::DesignableResiduesFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

std::string protocols::protein_interface_design::filters::DesignableResiduesFilter::class_name ( )

static

Referenced by protocols::protein_interface_design::filters::DesignableResiduesFilterCreator::keyname(), name(), and provide_xml_schema().

protocols::filters::FilterOP protocols::protein_interface_design::filters::DesignableResiduesFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

core::Size protocols::protein_interface_design::filters::DesignableResiduesFilter::compute

(

core::pose::Pose const &

pose

)

const

References designable(), core::pose::symmetry::is_symmetric(), core::conformation::Residue::name3(), packable(), core::pose::Pose::pdb_info(), core::pose::Pose::residue(), core::pose::Pose::size(), core::pose::symmetry::symmetry_info(), task_factory(), protocols::protein_interface_design::filters::TR(), and protocols::protein_interface_design::filters::TR_pymol().

Referenced by report_sm().

bool protocols::protein_interface_design::filters::DesignableResiduesFilter::designable

(

)

const

References designable_.

Referenced by compute(), and parse_my_tag().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::designable

(

bool const

d

)

References designable_.

protocols::filters::FilterOP protocols::protein_interface_design::filters::DesignableResiduesFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

core::Size protocols::protein_interface_design::filters::DesignableResiduesFilter::lower_threshold

(

)

const

References lower_threshold_.

Referenced by parse_my_tag().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::lower_threshold

(

core::Size const

l

)

References lower_threshold_.

std::string protocols::protein_interface_design::filters::DesignableResiduesFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

bool protocols::protein_interface_design::filters::DesignableResiduesFilter::packable

(

)

const

References packable_.

Referenced by compute(), and parse_my_tag().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::packable

(

bool const

p

)

References packable_.

void protocols::protein_interface_design::filters::DesignableResiduesFilter::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References designable(), lower_threshold(), packable(), core::pack::task::parse_task_operations(), task_factory(), protocols::protein_interface_design::filters::TR(), and upper_threshold().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References core::pack::task::attributes_for_parse_task_operations(), class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::protein_interface_design::filters::DesignableResiduesFilterCreator::provide_xml_schema().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

core::Real protocols::protein_interface_design::filters::DesignableResiduesFilter::report_sm ( core::pose::Pose const &  ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::DesignableResiduesFilter::task_factory

(

)

const

References task_factory_.

Referenced by compute(), parse_my_tag(), and task_factory().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::task_factory

(

core::pack::task::TaskFactoryOP

task_factory

)

References task_factory(), and task_factory_.

core::Size protocols::protein_interface_design::filters::DesignableResiduesFilter::upper_threshold

(

)

const

References upper_threshold_.

Referenced by parse_my_tag().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::upper_threshold

(

core::Size const

u

)

References protocols::hybridization::u, and upper_threshold_.

Member Data Documentation

bool protocols::protein_interface_design::filters::DesignableResiduesFilter::designable_

private

Referenced by designable().

core::Size protocols::protein_interface_design::filters::DesignableResiduesFilter::lower_threshold_

private

Referenced by lower_threshold().

bool protocols::protein_interface_design::filters::DesignableResiduesFilter::packable_

private

Referenced by packable().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::DesignableResiduesFilter::task_factory_

private

Referenced by task_factory().

core::Size protocols::protein_interface_design::filters::DesignableResiduesFilter::upper_threshold_

private

Referenced by upper_threshold().

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The documentation for this class was generated from the following files:

• src/protocols/protein_interface_design/filters/DesignableResiduesFilter.hh
• src/protocols/protein_interface_design/filters/DesignableResiduesFilter.cc