| cache_ | protocols::frag_picker::scores::TalosSSSimilarity | protected |
| cached_score(FragmentCandidateOP f, FragmentScoreMapOP empty_map) override | protocols::frag_picker::scores::TalosSSSimilarity | virtual |
| cached_scores_id_ | protocols::frag_picker::scores::TalosSSSimilarity | private |
| CachingScoringMethod(core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::CachingScoringMethod | inline |
| clean_up() override | protocols::frag_picker::scores::TalosSSSimilarity | inlinevirtual |
| do_caching(VallChunkOP) override | protocols::frag_picker::scores::TalosSSSimilarity | virtual |
| do_caching_simple(VallChunkOP) | protocols::frag_picker::scores::TalosSSSimilarity | |
| E_mult_ | protocols::frag_picker::scores::TalosSSSimilarity | private |
| FragmentScoringMethod(core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_id() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_min_allowed_score() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_prediction_name() | protocols::frag_picker::scores::TalosSSSimilarity | inline |
| get_priority() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_score_name() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_secondary_prediction() | protocols::frag_picker::scores::TalosSSSimilarity | inline |
| get_use_lowest() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| H_mult_ | protocols::frag_picker::scores::TalosSSSimilarity | private |
| id_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| L_mult_ | protocols::frag_picker::scores::TalosSSSimilarity | private |
| lowest_acceptable_value_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| name_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| prediction_name_ | protocols::frag_picker::scores::TalosSSSimilarity | private |
| priority_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| query_len_ | protocols::frag_picker::scores::TalosSSSimilarity | private |
| query_ss_ | protocols::frag_picker::scores::TalosSSSimilarity | private |
| raw_probs_ | protocols::frag_picker::scores::TalosSSSimilarity | private |
| score(FragmentCandidateOP, FragmentScoreMapOP) override | protocols::frag_picker::scores::TalosSSSimilarity | virtual |
| scores_ | protocols::frag_picker::scores::TalosSSSimilarity | protected |
| set_id(core::Size id) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| set_min_allowed_score(core::Real lowest_acceptable_value) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| TalosSSSimilarity(core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, core::fragment::SecondaryStructureOP query_prediction, std::string const &prediction_name, core::Size sequence_length, utility::vector1< core::Size > &frag_sizes, core::Size longest_vall_chunk) | protocols::frag_picker::scores::TalosSSSimilarity | |
| use_lowest_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| ~TalosSSSimilarity() override | protocols::frag_picker::scores::TalosSSSimilarity | inline |