This is the complete list of members for core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid, including all inherited members.

::VoidsPenaltyVoxelGridTests class	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	friend
::VoidsPenaltyVoxelGridTests_rotamer_setup class	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	friend
::VoidsPenaltyVoxelGridTests_rotamer_setup_2 class	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	friend
atom_overlaps_voxel(utility::fixedsizearray1< core::Size, 3 > const &voxel_index, numeric::xyzVector< core::Real > const &atom_xyz, core::Real const atomic_radius) const	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
clone() const	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
compute_bounding_box(core::pose::Pose const &pose, core::Real const &padding, numeric::xyzVector< core::Real > &lower_left_coords, numeric::xyzVector< core::Real > &upper_right_coords) const	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
compute_burial(core::pose::Pose const &pose, utility::fixedsizearray1< core::Size, 3 > const &voxel_data_dimensions, numeric::MathNTensor< bool, 3 > &voxel_data, core::Size &buried_volume) const	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
compute_total_volume_of_current_residues(core::pose::Pose const &pose) const	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
compute_volume_of_this_buried_rotamer(core::conformation::ResidueCOP rot, numeric::MathNTensor< bool, 3 > &untouched_voxels, core::Size &untouched_voxel_count) const	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
compute_volumes_of_buried_rotamers(core::pose::Pose const &pose, core::pack::rotamer_set::RotamerSets const &rotsets, utility::vector1< std::map< core::conformation::ResidueCOP, core::Real > > &rotamer_volume_maps, core::conformation::symmetry::SymmetryInfoCOP symminfo, core::conformation::symmetry::SymmetricConformationCOP symmconf)	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
cone_distance_cutoff_sq_	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
cone_dotproduct_cutoff_	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
containing_cones_cutoff_	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
get_current_res_symmetric(core::Size const index_in, core::conformation::symmetry::SymmetryInfoCOP symminfo) const	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
get_indices_of_voxel_from_coordinates(numeric::xyzVector< core::Real > point, utility::fixedsizearray1< core::Size, 3 > &output_indices) const	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
get_rotamer_bounding_box(core::conformation::ResidueCOP rot, utility::fixedsizearray1< core::Size, 3 > &bounding_box_start, utility::fixedsizearray1< core::Size, 3 > &bounding_box_end) const	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
get_voxel_coordinates(core::Size const index_x, core::Size const index_y, core::Size const index_z) const	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
half_voxel_size_	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
is_buried(numeric::xyzVector< core::Real > const &coords, utility::vector1< numeric::xyzVector< core::Real > > const &conevects, utility::vector1< numeric::xyzVector< core::Real > > const &conebases, utility::vector1< bool > const &skip_list) const	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
lower_left_coords_	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
non_packable_volume_pruned_	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
padding_	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
pose_setup_complete_	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
prune_voxels_for_fixed_residues(core::pose::Pose const &pose, core::pack::rotamer_set::RotamerSets const &rotsets, core::conformation::symmetry::SymmetryInfoCOP symminfo, core::conformation::symmetry::SymmetricConformationCOP symmconf)	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
reachable_buried_volume() const	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
reachable_buried_volume_	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
reset()	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
resize_voxel_grid(numeric::xyzVector< core::Real > const &lower_left_coords, numeric::xyzVector< core::Real > &upper_right_coords, core::Real const &voxel_size, utility::fixedsizearray1< core::Size, 3 > &voxel_data_dimensions, numeric::MathNTensor< bool, 3 > &voxel_data) const	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
rotamer_setup_complete_	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
set_cone_parameters(core::Real const &cone_dotproduct_cutoff_in, core::Real const cone_distance_cutoff_in, core::Size const containing_cones_cutoff_in)	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
set_up_voxel_grid_and_compute_burial(core::pose::Pose const &pose)	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
set_voxel_size_and_padding(core::Real const &size_in, core::Real const &padding_in)	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
total_buried_volume() const	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
total_buried_volume_	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
upper_right_coords_	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
visualize_voxel_grid(bool const only_buried_voxels) const	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
VoidsPenaltyVoxelGrid()	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
VoidsPenaltyVoxelGrid(VoidsPenaltyVoxelGrid const &src)	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
voxel_data_	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
voxel_data_dimensions_	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
voxel_size_	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
voxel_volume_	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid	private
~VoidsPenaltyVoxelGrid() override	core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid