core::scoring::cryst::PhenixInterface Member List

This is the complete list of members for core::scoring::cryst::PhenixInterface, including all inherited members.

adp_strategy_	core::scoring::cryst::PhenixInterface	private
algo_	core::scoring::cryst::PhenixInterface	private
calculateDensityMap(core::pose::Pose &pose, bool no_sidechain=false)	core::scoring::cryst::PhenixInterface
cif_files_	core::scoring::cryst::PhenixInterface	private
fitBfactors(core::pose::Pose &pose)	core::scoring::cryst::PhenixInterface
getInfoLine()	core::scoring::cryst::PhenixInterface
getR()	core::scoring::cryst::PhenixInterface
getRfree()	core::scoring::cryst::PhenixInterface
getScore(core::pose::Pose const &pose)	core::scoring::cryst::PhenixInterface
getScoreAndDerivs(core::pose::Pose const &pose, utility::vector1< utility::vector1< numeric::xyzVector< core::Real > > > &grads)	core::scoring::cryst::PhenixInterface
initialize_target_evaluator(core::pose::Pose const &pose, std::string eff_file="")	core::scoring::cryst::PhenixInterface	private
map_type_	core::scoring::cryst::PhenixInterface	private
mtzfile_	core::scoring::cryst::PhenixInterface	private
optimizeSolventMask()	core::scoring::cryst::PhenixInterface
optimizeSolvParams()	core::scoring::cryst::PhenixInterface
optimizeSolvParamsAndMask()	core::scoring::cryst::PhenixInterface
phenix_home_	core::scoring::cryst::PhenixInterface	private
PhenixInterface()	core::scoring::cryst::PhenixInterface
ref_pose_	core::scoring::cryst::PhenixInterface	private
set_adp_strategy(std::string adp_strat)	core::scoring::cryst::PhenixInterface	inline
set_cif_files(utility::vector1< std::string > cif_in)	core::scoring::cryst::PhenixInterface	inline
set_map_type(std::string map_type)	core::scoring::cryst::PhenixInterface
set_sharpen_b(core::Real sharpen_b)	core::scoring::cryst::PhenixInterface	inline
set_target_function(std::string tgt_val)	core::scoring::cryst::PhenixInterface	inline
setAlgorithm(std::string twin_law)	core::scoring::cryst::PhenixInterface
setResLimits(core::Real res_high=0.0, core::Real res_low=0.0)	core::scoring::cryst::PhenixInterface
setTwinLaw(std::string twin_law)	core::scoring::cryst::PhenixInterface
sharpen_b_	core::scoring::cryst::PhenixInterface	private
stealBfactorsFromFile(core::pose::Pose &pose, std::string filename)	core::scoring::cryst::PhenixInterface	private
target_function_	core::scoring::cryst::PhenixInterface	private
tempdir_	core::scoring::cryst::PhenixInterface	private
twin_law_	core::scoring::cryst::PhenixInterface	private
updateFcalc()	core::scoring::cryst::PhenixInterface
updateSolventMask()	core::scoring::cryst::PhenixInterface
updateSolventMask(core::pose::Pose const &pose)	core::scoring::cryst::PhenixInterface