util.cc File Reference

Utility functions for constraint generators. More...

#include <protocols/constraint_generator/util.hh>
#include <protocols/constraint_generator/ConstraintGenerator.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/id/SequenceMapping.hh>
#include <core/io/pdb/build_pose_as_is.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/scoring/func/ScalarWeightedFunc.hh>
#include <core/pose/symmetry/util.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/DataMap.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <utility/tag/Tag.hh>
#include <utility/tag/XMLSchemaGeneration.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::constraint_generator

Functions
static basic::Tracer	TR ("protocols.constraint_generator.util")
core::pose::PoseOP	protocols::constraint_generator::get_native_pose ()
	gets native pose from command line option, if one is specified More...
core::scoring::func::FuncOP	protocols::constraint_generator::scalar_weighted (core::scoring::func::FuncOP func, core::Real const weight)
	helper function to wrap a function with a scalar weighted function More...
core::scoring::func::FuncOP	protocols::constraint_generator::create_func (std::string const &func_def)
	creates a function from a text definition More...
core::id::SequenceMapping	protocols::constraint_generator::generate_seqmap_from_poses (core::pose::Pose const &pose1, core::pose::Pose const &pose2)
	creates a sequencemapping from pose1 to pose2 More...
core::Size	protocols::constraint_generator::compute_nres_in_asymmetric_unit (core::pose::Pose const &pose)
	find number of residues – if pose is symetric, returns nubmer of symmetry-independent residues More...
ConstraintGeneratorCOPs	protocols::constraint_generator::parse_constraint_generators (utility::tag::TagCOP tag, basic::datacache::DataMap const &data)
	parses constraint generators from a tag returns vector of ConstraintGeneratorCOPs More...
void	protocols::constraint_generator::attributes_for_parse_constraint_generators (utility::tag::AttributeList &attributes)
	Appends the attributes read by parse_constraint_generators. More...

Detailed Description

Utility functions for constraint generators.

Author

Tom Linsky (tlins.nosp@m.ky@u.nosp@m.w.edu)

Function Documentation

static basic::Tracer TR ( "protocols.constraint_generator.util"  )

static