Select CDR residues. More...

#include <CDRResidueSelector.hh>

Inheritance diagram for protocols::antibody::residue_selector::CDRResidueSelector:

Public Member Functions
	CDRResidueSelector ()
	Constructor. More...

	CDRResidueSelector (AntibodyInfoCOP ab_info)
	Constructor giving AntibodyInfo. More...

	CDRResidueSelector (AntibodyInfoCOP ab_info, utility::vector1< CDRNameEnum > cdrs)
	Constructor Specifying CDRs. More...

	CDRResidueSelector (AntibodyInfoCOP ab_info, utility::vector1< bool > cdrs)
	Constructor Specifying CDRs. More...

	CDRResidueSelector (CDRResidueSelector const &src)
	Copy Constructor. More...

void	set_cdr (CDRNameEnum cdr)
	Set a single CDR to select. More...

void	set_cdrs (utility::vector1< bool > cdrs)

void	set_cdrs (utility::vector1< CDRNameEnum > cdrs)

void	set_ab_info (AntibodyInfoCOP ab_info)

	~CDRResidueSelector () override
	Destructor. More...

core::select::residue_selector::ResidueSelectorOP	clone () const override
	Clone operator. More...

core::select::residue_selector::ResidueSubset	apply (core::pose::Pose const &pose) const override
	"Apply" function. More...

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) override
	XML parse. More...

std::string	get_name () const override
	Get the mover class name. More...

Public Member Functions inherited from core::select::residue_selector::ResidueSelector
	ResidueSelector ()
	Constructor. More...

	~ResidueSelector () override
	Destructor. More...

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
	Get the mover class name. More...

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
	Provide XSD information, enabling mechanical validation of input XML. More...

Private Member Functions
void	set_defaults ()

Private Attributes
AntibodyInfoCOP	ab_info_

utility::vector1< bool >	cdrs_

AntibodyNumberingSchemeEnum	numbering_scheme_

CDRDefinitionEnum	cdr_definition_

Detailed Description

Select CDR residues.

Constructor & Destructor Documentation

protocols::antibody::residue_selector::CDRResidueSelector::CDRResidueSelector ( )

Constructor.

References set_defaults().

protocols::antibody::residue_selector::CDRResidueSelector::CDRResidueSelector ( AntibodyInfoCOP ab_info )

Constructor giving AntibodyInfo.

References set_defaults().

protocols::antibody::residue_selector::CDRResidueSelector::CDRResidueSelector	(	AntibodyInfoCOP	ab_info,
		utility::vector1< CDRNameEnum >	cdrs
	)

Constructor Specifying CDRs.

References set_cdrs(), and set_defaults().

protocols::antibody::residue_selector::CDRResidueSelector::CDRResidueSelector	(	AntibodyInfoCOP	ab_info,
		utility::vector1< bool >	cdrs
	)

Constructor Specifying CDRs.

References set_cdrs(), and set_defaults().

protocols::antibody::residue_selector::CDRResidueSelector::CDRResidueSelector ( CDRResidueSelector const & src )

Copy Constructor.

References ab_info_.

protocols::antibody::residue_selector::CDRResidueSelector::~CDRResidueSelector ( )

overridedefault

Destructor.

Member Function Documentation

ResidueSubset protocols::antibody::residue_selector::CDRResidueSelector::apply ( core::pose::Pose const & pose ) const

overridevirtual

"Apply" function.

Given the pose, generate a vector of bools with entries for every residue in the pose indicating whether each residue is selected ("true") or not ("false").

Implements core::select::residue_selector::ResidueSelector.

References ab_info_, cdr_definition_, cdrs_, core::sequence::end, numbering_scheme_, core::pose::Pose::size(), and protocols::loops::start.

std::string protocols::antibody::residue_selector::CDRResidueSelector::class_name ( )

static

Get the mover class name.

Referenced by get_name(), protocols::antibody::residue_selector::CDRResidueSelectorCreator::keyname(), and provide_xml_schema().

core::select::residue_selector::ResidueSelectorOP protocols::antibody::residue_selector::CDRResidueSelector::clone ( ) const

overridevirtual

Clone operator.

Clone function.

Copy the current object (creating the copy on the heap) and return an owning pointer to the copy. All ResidueSelectors must implement this.

Copy this object and return owning pointer to the copy (created on the heap).

Implements core::select::residue_selector::ResidueSelector.

std::string protocols::antibody::residue_selector::CDRResidueSelector::get_name ( ) const

overridevirtual

Get the mover class name.

Implements core::select::residue_selector::ResidueSelector.

References class_name().

void protocols::antibody::residue_selector::CDRResidueSelector::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	datamap
	)

overridevirtual

XML parse.

Parse RosettaScripts tags and set up this mover.

Reimplemented from core::select::residue_selector::ResidueSelector.

References cdr_definition_, protocols::antibody::AntibodyEnumManager::cdr_definition_string_to_enum(), cdrs_, protocols::antibody::get_cdr_bool_from_tag(), numbering_scheme_, protocols::antibody::AntibodyEnumManager::numbering_scheme_string_to_enum(), and protocols::antibody::TR().

void protocols::antibody::residue_selector::CDRResidueSelector::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

Provide XSD information, enabling mechanical validation of input XML.

References class_name(), and core::pack::palette::xsd_type_definition_w_attributes().

Referenced by protocols::antibody::residue_selector::CDRResidueSelectorCreator::provide_xml_schema().

void protocols::antibody::residue_selector::CDRResidueSelector::set_ab_info ( AntibodyInfoCOP ab_info )

References ab_info_.

void protocols::antibody::residue_selector::CDRResidueSelector::set_cdr ( CDRNameEnum cdr )

Set a single CDR to select.

References cdrs_.

void protocols::antibody::residue_selector::CDRResidueSelector::set_cdrs ( utility::vector1< bool > cdrs )

References cdrs_.

Referenced by CDRResidueSelector().

void protocols::antibody::residue_selector::CDRResidueSelector::set_cdrs ( utility::vector1< CDRNameEnum > cdrs )

References cdrs_.

void protocols::antibody::residue_selector::CDRResidueSelector::set_defaults ( )

private

References cdr_definition_, protocols::antibody::AntibodyEnumManager::cdr_definition_string_to_enum(), cdrs_, numbering_scheme_, and protocols::antibody::AntibodyEnumManager::numbering_scheme_string_to_enum().

Referenced by CDRResidueSelector().

Member Data Documentation

AntibodyInfoCOP protocols::antibody::residue_selector::CDRResidueSelector::ab_info_

private

Referenced by apply(), CDRResidueSelector(), and set_ab_info().

CDRDefinitionEnum protocols::antibody::residue_selector::CDRResidueSelector::cdr_definition_

private

Referenced by apply(), parse_my_tag(), and set_defaults().

utility::vector1< bool > protocols::antibody::residue_selector::CDRResidueSelector::cdrs_

private

Referenced by apply(), parse_my_tag(), set_cdr(), set_cdrs(), and set_defaults().

AntibodyNumberingSchemeEnum protocols::antibody::residue_selector::CDRResidueSelector::numbering_scheme_

private

Referenced by apply(), parse_my_tag(), and set_defaults().

The documentation for this class was generated from the following files:

src/protocols/antibody/residue_selector/CDRResidueSelector.hh
src/protocols/antibody/residue_selector/CDRResidueSelector.cc

Public Member Functions

Static Public Member Functions

Private Member Functions

Private Attributes

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation