core::scoring::motif::MotifHashManager Class Reference

#include <motif_hash_stuff.hh>

Inheritance diagram for core::scoring::motif::MotifHashManager:

Public Types
typedef ResPairMotifMetaBinner::Key	Key

Public Member Functions
	~MotifHashManager ()
bool	have_motifs () const
MotifHashCOP	get_motif_hash_BB_BB ()
MotifHashCOP	get_motif_hash_SC_BB ()
MotifHashCOP	get_motif_hash_SC_SC ()
MotifHashCOP	get_motif_hash_BB_PH ()
MotifHashCOP	get_motif_hash_BB_PO ()
void	add_motif_set_name (std::string const &motifset)
bool	have_motif_set_named (std::string const &motifset) const
std::set< std::string >	motif_set_names () const
MotifHashCOP	get_motif_hash_by_fname (std::string const &fname)
MotifHashStringMap const &	get_motif_hash_by_fname ()
XformScoreCOP	get_xform_score_SC_BB (char aa1)
XformScoreCOP	get_xform_score_SC_SC (char aa1, char aa2)
XformScoreCOP	get_xform_score_BB_BB (char ss1, char ss2, char aa1=' ', char aa2=' ')
XformScoreCOP	get_xform_score_frags ()
XformScoreCOP	get_xform_score_BB_PH ()
XformScoreCOP	get_xform_score_BB_PO ()
XformScoreCOP	get_xform_score_PH_PO ()
int	get_matching_motifs (ResPairMotifQuery const &opt, MotifHits &hits) const

Private Member Functions
	MotifHashManager ()
	MotifHashManager (MotifHashManager const &)=delete
MotifHashManager &	operator= (MotifHashManager const &)=delete
void	init ()

Private Attributes
MotifHashOP	motif_hash_SC_BB_
MotifHashOP	motif_hash_SC_SC_
MotifHashOP	motif_hash_BB_BB_
MotifHashOP	motif_hash_BB_PH_
MotifHashOP	motif_hash_BB_PO_
MotifHashStringMap	motifs_by_fname_
XformScoreOP	xform_score_BB_PH_
XformScoreOP	xform_score_BB_PO_
XformScoreOP	xform_score_PH_PO_
XformScoreMap	xform_scores_BB_BB_
XformScoreOP	xform_score_frags_
XformScoreMap	xform_scores_SC_BB_
XformScoreMap	xform_scores_SC_SC_
std::set< std::string >	motif_set_names_
Key	key_mask_BB_BB_
bool	done_loading_

Friends
class	utility::SingletonBase< MotifHashManager >
void	preload_motif_data (MotifHashManager &mman)

Member Typedef Documentation

typedef ResPairMotifMetaBinner::Key core::scoring::motif::MotifHashManager::Key

Constructor & Destructor Documentation

core::scoring::motif::MotifHashManager::~MotifHashManager

(

)

core::scoring::motif::MotifHashManager::MotifHashManager ( )

private

References init().

core::scoring::motif::MotifHashManager::MotifHashManager ( MotifHashManager const &  )

privatedelete

Member Function Documentation

void core::scoring::motif::MotifHashManager::add_motif_set_name

(

std::string const &

motifset

)

References motif_set_names_.

Referenced by init().

int core::scoring::motif::MotifHashManager::get_matching_motifs	(	ResPairMotifQuery const &	opt,
		MotifHits &	hits
	)		const

References core::scoring::motif::ResPairMotifQuery::copy_opts_swapped(), motif_set_names_, core::scoring::motif::ResPairMotifQuery::pose1(), and core::scoring::motif::ResPairMotifQuery::pose2().

MotifHashCOP core::scoring::motif::MotifHashManager::get_motif_hash_BB_BB

(

)

References done_loading_, and motif_hash_BB_BB_.

MotifHashCOP core::scoring::motif::MotifHashManager::get_motif_hash_BB_PH

(

)

References done_loading_, and motif_hash_BB_PH_.

MotifHashCOP core::scoring::motif::MotifHashManager::get_motif_hash_BB_PO

(

)

References done_loading_, and motif_hash_BB_PO_.

MotifHashCOP core::scoring::motif::MotifHashManager::get_motif_hash_by_fname

(

std::string const &

fname

)

References get_motif_hash_by_fname(), and motifs_by_fname_.

MotifHashStringMap const & core::scoring::motif::MotifHashManager::get_motif_hash_by_fname

(

)

References done_loading_, and motifs_by_fname_.

Referenced by get_motif_hash_by_fname().

MotifHashCOP core::scoring::motif::MotifHashManager::get_motif_hash_SC_BB

(

)

References done_loading_, and motif_hash_SC_BB_.

MotifHashCOP core::scoring::motif::MotifHashManager::get_motif_hash_SC_SC

(

)

References done_loading_, and motif_hash_SC_SC_.

XformScoreCOP core::scoring::motif::MotifHashManager::get_xform_score_BB_BB	(	char	ss1,
		char	ss2,
		char	aa1 = ' ',
		char	aa2 = ' '
	)

References key_mask_BB_BB_, and xform_scores_BB_BB_.

Referenced by core::energy_methods::CenPairMotifDegreeEnergy::finalize_total_energy(), core::energy_methods::CenPairMotifEnergy::finalize_total_energy(), protocols::legacy_sewing::scoring::LegacyMotifScorer::get_score(), protocols::sewing::scoring::MotifScorer::get_score(), core::energy_methods::SSElementMotifContactEnergy::get_SSelements_in_contact(), protocols::simple_filters::SSElementMotifContactFilter::get_SSelements_in_contact(), and core::energy_methods::MotifDockEnergy::residue_pair_energy().

XformScoreCOP core::scoring::motif::MotifHashManager::get_xform_score_BB_PH

(

)

References xform_score_BB_PH_.

XformScoreCOP core::scoring::motif::MotifHashManager::get_xform_score_BB_PO

(

)

References xform_score_BB_PO_.

XformScoreCOP core::scoring::motif::MotifHashManager::get_xform_score_frags

(

)

References xform_score_frags_.

XformScoreCOP core::scoring::motif::MotifHashManager::get_xform_score_PH_PO

(

)

References xform_score_PH_PO_.

XformScoreCOP core::scoring::motif::MotifHashManager::get_xform_score_SC_BB

(

char

aa1

)

References xform_scores_SC_BB_.

XformScoreCOP core::scoring::motif::MotifHashManager::get_xform_score_SC_SC	(	char	aa1,
		char	aa2
	)

References xform_scores_SC_SC_.

bool core::scoring::motif::MotifHashManager::have_motif_set_named

(

std::string const &

motifset

)

const

References motif_set_names_.

bool core::scoring::motif::MotifHashManager::have_motifs ( ) const

inline

References motif_set_names_.

void core::scoring::motif::MotifHashManager::init ( void  )

private

References protocols::cluster::calibur::aa, add_motif_set_name(), core::scoring::motif::fill_xform_score_from_file(), key_mask_BB_BB_, preload_motif_data, core::scoring::motif::preload_motif_data_pthread_wrapper(), protocols::hybridization::u, xform_score_BB_PH_, xform_score_BB_PO_, xform_score_frags_, xform_score_PH_PO_, xform_scores_BB_BB_, xform_scores_SC_BB_, and xform_scores_SC_SC_.

Referenced by MotifHashManager().

std::set<std::string> core::scoring::motif::MotifHashManager::motif_set_names ( ) const

inline

References motif_set_names_.

MotifHashManager& core::scoring::motif::MotifHashManager::operator= ( MotifHashManager const &  )

privatedelete

Friends And Related Function Documentation

void preload_motif_data ( MotifHashManager &  mman )

friend

Referenced by init().

friend class utility::SingletonBase< MotifHashManager >

friend

Member Data Documentation

bool core::scoring::motif::MotifHashManager::done_loading_

private

Referenced by get_motif_hash_BB_BB(), get_motif_hash_BB_PH(), get_motif_hash_BB_PO(), get_motif_hash_by_fname(), get_motif_hash_SC_BB(), get_motif_hash_SC_SC(), and core::scoring::motif::preload_motif_data().

Key core::scoring::motif::MotifHashManager::key_mask_BB_BB_

private

Referenced by get_xform_score_BB_BB(), and init().

MotifHashOP core::scoring::motif::MotifHashManager::motif_hash_BB_BB_

private

Referenced by get_motif_hash_BB_BB(), and core::scoring::motif::preload_motif_data().

MotifHashOP core::scoring::motif::MotifHashManager::motif_hash_BB_PH_

private

Referenced by get_motif_hash_BB_PH(), and core::scoring::motif::preload_motif_data().

MotifHashOP core::scoring::motif::MotifHashManager::motif_hash_BB_PO_

private

Referenced by get_motif_hash_BB_PO(), and core::scoring::motif::preload_motif_data().

MotifHashOP core::scoring::motif::MotifHashManager::motif_hash_SC_BB_

private

Referenced by get_motif_hash_SC_BB(), and core::scoring::motif::preload_motif_data().

MotifHashOP core::scoring::motif::MotifHashManager::motif_hash_SC_SC_

private

Referenced by get_motif_hash_SC_SC().

std::set<std::string> core::scoring::motif::MotifHashManager::motif_set_names_

private

Referenced by add_motif_set_name(), get_matching_motifs(), have_motif_set_named(), have_motifs(), and motif_set_names().

MotifHashStringMap core::scoring::motif::MotifHashManager::motifs_by_fname_

private

Referenced by get_motif_hash_by_fname(), and core::scoring::motif::preload_motif_data().

XformScoreOP core::scoring::motif::MotifHashManager::xform_score_BB_PH_

private

Referenced by get_xform_score_BB_PH(), and init().

XformScoreOP core::scoring::motif::MotifHashManager::xform_score_BB_PO_

private

Referenced by get_xform_score_BB_PO(), and init().

XformScoreOP core::scoring::motif::MotifHashManager::xform_score_frags_

private

Referenced by get_xform_score_frags(), and init().

XformScoreOP core::scoring::motif::MotifHashManager::xform_score_PH_PO_

private

Referenced by get_xform_score_PH_PO(), and init().

XformScoreMap core::scoring::motif::MotifHashManager::xform_scores_BB_BB_

private

Referenced by get_xform_score_BB_BB(), and init().

XformScoreMap core::scoring::motif::MotifHashManager::xform_scores_SC_BB_

private

Referenced by get_xform_score_SC_BB(), and init().

XformScoreMap core::scoring::motif::MotifHashManager::xform_scores_SC_SC_

private

Referenced by get_xform_score_SC_SC(), and init().

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The documentation for this class was generated from the following files:

• src/core/scoring/motif/motif_hash_stuff.hh
• src/core/scoring/motif/motif_hash_stuff.cc