| acknowledge_partial_state_assignment(int node_index, int new_state, FlexbbSparseMatrixIndex const &state_info) | protocols::flexpack::interaction_graph::FlexbbEdge | |
| acknowledge_state_zeroed(int node_index) | protocols::flexpack::interaction_graph::MinimalistFlexbbEdge | |
| acknowledge_substitution(int node_changing_state) | protocols::flexpack::interaction_graph::MinimalistFlexbbEdge | |
| alt_e_up_to_date() const | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| alt_energy() const | protocols::flexpack::interaction_graph::FlexbbEdge | inline |
| alt_rot(int which_node) const | protocols::flexpack::interaction_graph::OTFFlexbbEdge | inlineprotected |
| compute_altbbconf_alternate_state_energy() | protocols::flexpack::interaction_graph::OTFFlexbbEdge | |
| compute_samebbconf_alternate_state_energy_first_node() | protocols::flexpack::interaction_graph::OTFFlexbbEdge | |
| compute_samebbconf_alternate_state_energy_second_node() | protocols::flexpack::interaction_graph::OTFFlexbbEdge | |
| copy_alternate_to_current() | protocols::flexpack::interaction_graph::FlexbbEdge | protected |
| count_dynamic_memory() const override | protocols::flexpack::interaction_graph::MinimalistFlexbbEdge | virtual |
| count_static_memory() const override | protocols::flexpack::interaction_graph::MinimalistFlexbbEdge | virtual |
| cur_energy() const | protocols::flexpack::interaction_graph::FlexbbEdge | inline |
| declare_energies_final() override | protocols::flexpack::interaction_graph::MinimalistFlexbbEdge | virtual |
| edge_weight() const | core::pack::interaction_graph::EdgeBase | inline |
| edge_weight(Real) | core::pack::interaction_graph::EdgeBase | protected |
| EdgeBase(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::EdgeBase | |
| FArray2D_PackerEnergy typedef | protocols::flexpack::interaction_graph::OTFFlexbbEdge | |
| FlexbbEdge(FlexbbInteractionGraph *owner, int first_node_ind, int second_node_ind) | protocols::flexpack::interaction_graph::FlexbbEdge | |
| get_alt_stateE() | protocols::flexpack::interaction_graph::MinimalistFlexbbEdge | |
| get_edges_position_in_nodes_edge_vector(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_first_node_ind() const | core::pack::interaction_graph::EdgeBase | |
| get_flexbb_node(int index) const | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| get_flexbb_node(int index) | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| get_flexbbig_owner() const | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| get_flexbbig_owner() | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| get_minimalistflexbb_node(int index) const | protocols::flexpack::interaction_graph::MinimalistFlexbbEdge | inlineprotected |
| get_minimalistflexbb_node(int index) | protocols::flexpack::interaction_graph::MinimalistFlexbbEdge | inlineprotected |
| get_minimalistflexbbig_owner() const | protocols::flexpack::interaction_graph::MinimalistFlexbbEdge | inlineprotected |
| get_minimalistflexbbig_owner() | protocols::flexpack::interaction_graph::MinimalistFlexbbEdge | inlineprotected |
| get_node(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_node(int index) | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_node_index(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_nodes_from_same_flexseg() const | protocols::flexpack::interaction_graph::FlexbbEdge | inline |
| get_num_states_for_node(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_otfflexbb_node(int index) const | protocols::flexpack::interaction_graph::OTFFlexbbEdge | inlineprotected |
| get_otfflexbb_node(int index) | protocols::flexpack::interaction_graph::OTFFlexbbEdge | inlineprotected |
| get_otfflexbbig_owner() const | protocols::flexpack::interaction_graph::OTFFlexbbEdge | inlineprotected |
| get_otfflexbbig_owner() | protocols::flexpack::interaction_graph::OTFFlexbbEdge | inlineprotected |
| get_other_ind(int callers_index) const | core::pack::interaction_graph::EdgeBase | |
| get_other_node(int callers_index) const | core::pack::interaction_graph::EdgeBase | |
| get_owner() const | core::pack::interaction_graph::EdgeBase | inline |
| get_owner() | core::pack::interaction_graph::EdgeBase | inline |
| get_second_node_ind() const | core::pack::interaction_graph::EdgeBase | |
| mark_edge_for_deletion() | core::pack::interaction_graph::EdgeBase | inlineprotected |
| marked_for_deletion() const | core::pack::interaction_graph::EdgeBase | inline |
| MinimalistFlexbbEdge(MinimalistFlexbbInteractionGraph *owner, int node1, int node2) | protocols::flexpack::interaction_graph::MinimalistFlexbbEdge | |
| nodes_alt_info(int node) const | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| nodes_alt_state(int node) const | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| nodes_considering_bb_move() const | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| nodes_cur_info(int node) const | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| nodes_cur_state(int node) const | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| nodes_part_of_same_flexseg() const | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| note_long_range_interactions_exist() | protocols::flexpack::interaction_graph::OTFFlexbbEdge | |
| note_state_substitution_accepted() | protocols::flexpack::interaction_graph::FlexbbEdge | |
| num_bb(int node) | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| otfedge_note_substitution_accepted() | protocols::flexpack::interaction_graph::OTFFlexbbEdge | |
| OTFFlexbbEdge(OTFFlexbbInteractionGraph *owner, int node1, int node2) | protocols::flexpack::interaction_graph::OTFFlexbbEdge | |
| PackerEnergy typedef | protocols::flexpack::interaction_graph::FlexbbEdge | |
| parent typedef | protocols::flexpack::interaction_graph::MinimalistFlexbbEdge | |
| prepare_for_simulated_annealing() override | protocols::flexpack::interaction_graph::MinimalistFlexbbEdge | virtual |
| print_alt_energies() const | protocols::flexpack::interaction_graph::OTFFlexbbEdge | |
| Real typedef | protocols::flexpack::interaction_graph::MinimalistFlexbbEdge | |
| reset_alternate_states_for_uncommited_substitution() | protocols::flexpack::interaction_graph::FlexbbEdge | |
| Residue typedef | protocols::flexpack::interaction_graph::OTFFlexbbEdge | |
| same_edge(int node1, int node2) const | core::pack::interaction_graph::EdgeBase | |
| set_alt_energy(PackerEnergy setting) | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| set_alt_state(int node_index, int new_state, FlexbbSparseMatrixIndex const &state_info) | protocols::flexpack::interaction_graph::FlexbbEdge | |
| set_cur_energy(PackerEnergy setting) | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| set_edge_weight(Real weight) override | protocols::flexpack::interaction_graph::MinimalistFlexbbEdge | virtual |
| set_GlyCorrection_values(int node_not_necessarily_glycine, int state, int other_bb, PackerEnergy bb_nonglybb_E, PackerEnergy bb_glybb_E, PackerEnergy sc_nonglybb_E, PackerEnergy sc_glybb_E) | protocols::flexpack::interaction_graph::OTFFlexbbEdge | |
| set_node_state_to_zero(int which_node) | protocols::flexpack::interaction_graph::FlexbbEdge | protected |
| set_nodes_alt_info(int node, FlexbbSparseMatrixIndex const &setting) | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| set_nodes_alt_state(int node, int setting) | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| set_nodes_considering_bb_move(bool status) | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| set_nodes_cur_info(int node, FlexbbSparseMatrixIndex const &setting) | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| set_nodes_cur_state(int node, int setting) | protocols::flexpack::interaction_graph::FlexbbEdge | inlineprotected |
| set_pos_in_node_edgevector(int callers_index, int position) | core::pack::interaction_graph::EdgeBase | |
| set_pos_in_owners_list(std::list< EdgeBase * >::iterator edge_iterator) | core::pack::interaction_graph::EdgeBase | |
| set_ProCorrection_values(int node_not_necessarily_proline, int state, int other_bb, PackerEnergy bb_nonprobb_E, PackerEnergy bb_probb_E, PackerEnergy sc_nonprobb_E, PackerEnergy sc_probb_E) | protocols::flexpack::interaction_graph::OTFFlexbbEdge | |
| Size typedef | protocols::flexpack::interaction_graph::FlexbbEdge | |
| which_node(int node_index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| zero_state_on_node(int which_node) | protocols::flexpack::interaction_graph::OTFFlexbbEdge | protected |
| ~EdgeBase() | core::pack::interaction_graph::EdgeBase | virtual |
| ~FlexbbEdge() override | protocols::flexpack::interaction_graph::FlexbbEdge | |
| ~MinimalistFlexbbEdge() override | protocols::flexpack::interaction_graph::MinimalistFlexbbEdge | |
| ~OTFFlexbbEdge() override | protocols::flexpack::interaction_graph::OTFFlexbbEdge | |
1.8.7