protocols::features::helixAssembly::HelicalFragment Class Reference

#include <HelicalFragment.hh>

Inheritance diagram for protocols::features::helixAssembly::HelicalFragment:

Public Member Functions
	HelicalFragment ()
	HelicalFragment (core::Size start, core::Size end)
	~HelicalFragment () override
core::Size	seq_start () const
core::Size	seq_end () const
core::Size	end () const
core::Size	start () const
core::Size	size () const
bool	reversed () const
void	principal_component (numeric::xyzVector< core::Real > principal_component)
numeric::xyzVector< core::Real >	principal_component () const
void	com (numeric::xyzVector< core::Real > com)
numeric::xyzVector< core::Real >	com () const
void	p0 (numeric::xyzVector< core::Real > p0)
numeric::xyzVector< core::Real >	p0 () const
void	p1 (numeric::xyzVector< core::Real > p1)
numeric::xyzVector< core::Real >	p1 () const
void	sasa (core::Real sasa)
core::Real	sasa () const

Private Attributes
core::Size	start_
core::Size	end_
std::string	pdb_source_
core::Real	sasa_
numeric::xyzVector< core::Real >	com_
numeric::xyzVector< core::Real >	principal_component_
numeric::xyzVector< core::Real >	p0_
numeric::xyzVector< core::Real >	p1_

Friends
std::ostream &	operator<< (std::ostream &os, HelicalFragment const &t)
	output operator More...

Constructor & Destructor Documentation

protocols::features::helixAssembly::HelicalFragment::HelicalFragment

(

)

protocols::features::helixAssembly::HelicalFragment::HelicalFragment	(	core::Size	start,
		core::Size	end
	)

protocols::features::helixAssembly::HelicalFragment::~HelicalFragment ( )

overridedefault

Member Function Documentation

void protocols::features::helixAssembly::HelicalFragment::com

(

numeric::xyzVector< core::Real >

com

)

References com(), and com_.

numeric::xyzVector< core::Real > protocols::features::helixAssembly::HelicalFragment::com

(

)

const

References com_.

Referenced by com().

core::Size protocols::features::helixAssembly::HelicalFragment::end

(

)

const

References end_.

Referenced by protocols::features::helixAssembly::operator<<().

void protocols::features::helixAssembly::HelicalFragment::p0

(

numeric::xyzVector< core::Real >

p0

)

References p0(), and p0_.

numeric::xyzVector< core::Real > protocols::features::helixAssembly::HelicalFragment::p0

(

)

const

References p0_.

Referenced by p0().

void protocols::features::helixAssembly::HelicalFragment::p1

(

numeric::xyzVector< core::Real >

p1

)

References p1(), and p1_.

numeric::xyzVector< core::Real > protocols::features::helixAssembly::HelicalFragment::p1

(

)

const

References p1_.

Referenced by p1().

void protocols::features::helixAssembly::HelicalFragment::principal_component

(

numeric::xyzVector< core::Real >

principal_component

)

References principal_component(), and principal_component_.

numeric::xyzVector< core::Real > protocols::features::helixAssembly::HelicalFragment::principal_component

(

)

const

References principal_component_.

Referenced by principal_component().

bool protocols::features::helixAssembly::HelicalFragment::reversed

(

)

const

References end_, and start_.

void protocols::features::helixAssembly::HelicalFragment::sasa

(

core::Real

sasa

)

References sasa(), and sasa_.

core::Real protocols::features::helixAssembly::HelicalFragment::sasa

(

)

const

References sasa_.

Referenced by sasa().

core::Size protocols::features::helixAssembly::HelicalFragment::seq_end

(

)

const

References end_, protocols::mean_field::max(), and start_.

core::Size protocols::features::helixAssembly::HelicalFragment::seq_start

(

)

const

References end_, protocols::mean_field::min(), and start_.

core::Size protocols::features::helixAssembly::HelicalFragment::size

(

)

const

References end_, and start_.

Referenced by protocols::features::helixAssembly::HelixBundleFeatures::report_features().

core::Size protocols::features::helixAssembly::HelicalFragment::start

(

)

const

References start_.

Referenced by protocols::features::helixAssembly::operator<<().

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  os, HelicalFragment const &  t  )

friend

output operator

Member Data Documentation

numeric::xyzVector<core::Real> protocols::features::helixAssembly::HelicalFragment::com_

private

Referenced by com().

core::Size protocols::features::helixAssembly::HelicalFragment::end_

private

Referenced by end(), reversed(), seq_end(), seq_start(), and size().

numeric::xyzVector<core::Real> protocols::features::helixAssembly::HelicalFragment::p0_

private

Referenced by p0().

numeric::xyzVector<core::Real> protocols::features::helixAssembly::HelicalFragment::p1_

private

Referenced by p1().

std::string protocols::features::helixAssembly::HelicalFragment::pdb_source_

private

numeric::xyzVector<core::Real> protocols::features::helixAssembly::HelicalFragment::principal_component_

private

Referenced by principal_component().

core::Real protocols::features::helixAssembly::HelicalFragment::sasa_

private

Referenced by sasa().

core::Size protocols::features::helixAssembly::HelicalFragment::start_

private

Referenced by reversed(), seq_end(), seq_start(), size(), and start().

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The documentation for this class was generated from the following files:

• src/protocols/features/helixAssembly/HelicalFragment.hh
• src/protocols/features/helixAssembly/HelicalFragment.cc