| atom(core::Size const ) const override | core::scoring::aa_composition_energy::SequenceConstraint | inlinevirtual |
| AtomID typedef | core::scoring::constraints::Constraint | |
| choose_effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp, numeric::random::RandomGenerator &) | core::scoring::constraints::Constraint | virtual |
| clone() const override | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | virtual |
| core::scoring::aa_composition_energy::SequenceConstraint::clone(func::FuncOP) const | core::scoring::constraints::Constraint | virtual |
| Constraint(ScoreType const &t) | core::scoring::constraints::Constraint | |
| cst_selector_name_ | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | private |
| cst_weight_ | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | private |
| dist(core::scoring::func::XYZ_Func const &) const override | core::scoring::aa_composition_energy::SequenceConstraint | inlinevirtual |
| core::scoring::constraints::Constraint::dist(core::pose::Pose const &) const | core::scoring::constraints::Constraint | virtual |
| effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &) const | core::scoring::constraints::Constraint | virtual |
| fill_f1_f2(core::id::AtomID const &, core::scoring::func::XYZ_Func const &, Vector &, Vector &, EnergyMap const &) const override | core::scoring::aa_composition_energy::SequenceConstraint | inlinevirtual |
| get_cst_weight() const | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | |
| get_func() const | core::scoring::constraints::Constraint | virtual |
| get_selector_name() | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | inline |
| initialize_from_file(std::string const &filename) | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | |
| initialize_from_file_contents(std::string const &filecontents) | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | |
| mhc_epitope_energy_setup() const | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | |
| mhc_epitope_setup_ | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | private |
| MHCEpitopeConstraint() | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | |
| MHCEpitopeConstraint(MHCEpitopeConstraint const &src) | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | |
| natoms() const override | core::scoring::aa_composition_energy::SequenceConstraint | inlinevirtual |
| operator!=(Constraint const &other) const | core::scoring::constraints::Constraint | |
| operator==(constraints::Constraint const &) const override | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | virtual |
| read_constraint(std::istream &, core::pose::Pose const &) | core::scoring::constraints::Constraint | virtual |
| read_data(std::istream &) | core::scoring::constraints::Constraint | virtual |
| read_def(std::istream &, pose::Pose const &, core::scoring::func::FuncFactory const &) | core::scoring::constraints::Constraint | virtual |
| remap_resid(core::id::SequenceMapping const &) const | core::scoring::constraints::Constraint | virtual |
| remapped_clone(pose::Pose const &, pose::Pose const &, id::SequenceMappingCOP map) const | core::scoring::constraints::Constraint | virtual |
| residues() const | core::scoring::constraints::Constraint | virtual |
| same_type_as_me(constraints::Constraint const &other) const override | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | virtual |
| score(core::scoring::func::XYZ_Func const &, EnergyMap const &, EnergyMap &) const override | core::scoring::aa_composition_energy::SequenceConstraint | inlinevirtual |
| core::scoring::constraints::Constraint::score(pose::Pose const &pose) const | core::scoring::constraints::Constraint | virtual |
| core::scoring::constraints::Constraint::score(pose::Pose const &pose, EnergyMap const &weights) const | core::scoring::constraints::Constraint | virtual |
| score_type() const | core::scoring::constraints::Constraint | inline |
| selector() const | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | |
| selector_ | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | private |
| SequenceConstraint(core::scoring::ScoreType const &t) | core::scoring::aa_composition_energy::SequenceConstraint | |
| SequenceConstraint(SequenceConstraint const &src) | core::scoring::aa_composition_energy::SequenceConstraint | |
| set_cst_weight(core::Real cst_weight) | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | |
| set_selector(select::residue_selector::ResidueSelectorCOP selector_in) | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | |
| set_selector_name(std::string const &selector_name) | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | inline |
| setup_for_derivatives(core::scoring::func::XYZ_Func const &, ScoreFunction const &) const | core::scoring::constraints::Constraint | virtual |
| setup_for_scoring(core::scoring::func::XYZ_Func const &, ScoreFunction const &) const | core::scoring::constraints::Constraint | virtual |
| show(std::ostream &) const | core::scoring::constraints::Constraint | virtual |
| show_def(std::ostream &TO, pose::Pose const &pose) const override | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | virtual |
| show_violations(std::ostream &out, pose::Pose const &, Size, Real threshold=1) const | core::scoring::constraints::Constraint | virtual |
| steal_def(pose::Pose const &) | core::scoring::constraints::Constraint | virtual |
| to_string() const | core::scoring::constraints::Constraint | |
| type() const | core::scoring::constraints::Constraint | virtual |
| ~Constraint() override | core::scoring::constraints::Constraint | |
| ~MHCEpitopeConstraint() override | core::scoring::mhc_epitope_energy::MHCEpitopeConstraint | |
| ~SequenceConstraint() override | core::scoring::aa_composition_energy::SequenceConstraint | |
1.8.7