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protocols::features::HBondFeatures Member List

This is the complete list of members for protocols::features::HBondFeatures, including all inherited members.

check_relevant_residues(utility::vector1< bool > const &relevant_residues, core::Size res1) const protocols::features::FeaturesReporter
check_relevant_residues(utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const protocols::features::FeaturesReporter
check_relevant_residues(utility::vector1< bool > const &relevant_residues, utility::vector1< core::Size > const &residues) const protocols::features::FeaturesReporter
check_relevant_residues_range(utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const protocols::features::FeaturesReporter
class_name()protocols::features::HBondFeaturesstatic
definition_threshold_protocols::features::HBondFeaturesprivate
definition_type_protocols::features::HBondFeaturesprivate
delete_record(StructureID, utility::sql_database::sessionOP)protocols::features::FeaturesReporterinlinevirtual
delete_records_from_table(std::string const &table_name, StructureID struct_id, utility::sql_database::sessionOP db_session)protocols::features::FeaturesReporterprotected
features_reporter_dependencies() const overrideprotocols::features::HBondFeaturesvirtual
FeaturesReporter()protocols::features::FeaturesReporterinline
find_tag(core::pose::Pose const &pose) const protocols::features::FeaturesReporterprotected
get_relevant_residues_mode() const protocols::features::FeaturesReporter
HBondFeatures()protocols::features::HBondFeatures
HBondFeatures(core::scoring::ScoreFunctionOP scfxn)protocols::features::HBondFeatures
insert_hbond_dehydron_row(core::pose::Pose const &pose, core::scoring::hbonds::HBond const &hbond, StructureID struct_id, core::Size hbond_id, utility::sql_database::sessionOP db_session)protocols::features::HBondFeatures
insert_hbond_geom_coords(core::pose::Pose const &pose, core::scoring::hbonds::HBondOptions const &hbond_options, core::scoring::hbonds::HBond const &hbond, StructureID struct_id, core::Size hbond_id, utility::sql_database::sessionOP db_session)protocols::features::HBondFeatures
insert_hbond_lennard_jones_row(core::pose::Pose const &pose, core::scoring::hbonds::HBond const &hbond, StructureID struct_id, core::Size hbond_id, utility::sql_database::sessionOP db_session)protocols::features::HBondFeatures
insert_hbond_row(core::scoring::hbonds::HBond const &hbond, StructureID struct_id, core::Size hbond_id, core::id::AtomID_Map< core::Size > const &site_ids, core::id::AtomID_Map< utility::vector1< core::scoring::hbonds::HBondCOP > > const &site_partners, utility::sql_database::sessionOP db_session)protocols::features::HBondFeatures
insert_site_atoms_row(core::pose::Pose const &pose, core::Size resNum, core::Size atmNum, StructureID struct_id, core::Size site_id, utility::sql_database::sessionOP db_session)protocols::features::HBondFeatures
insert_site_environment_row(core::pose::Pose const &pose, core::Size resNum, core::Size atmNum, StructureID struct_id, core::Size site_id, core::id::AtomID_Map< core::Real > const &atom_sasa_s, core::id::AtomID_Map< core::Real > const &atom_sasa_m, core::id::AtomID_Map< core::Real > const &atom_sasa_l, core::id::AtomID_Map< utility::vector1< core::scoring::hbonds::HBondCOP > > const &site_partners, core::id::AtomID_Map< core::Real > const &site_hbond_energies, utility::sql_database::sessionOP db_session)protocols::features::HBondFeatures
insert_site_pdb_row(core::pose::Pose const &pose, core::Size resNum, core::Size atmNum, core::Size heavy_atmNum, StructureID struct_id, core::Size site_id, utility::sql_database::sessionOP db_session)protocols::features::HBondFeatures
insert_site_row(core::pose::Pose const &pose, StructureID struct_id, core::Size site_id, core::Size resNum, core::Size atmNum, bool is_donor, utility::sql_database::sessionOP db_session)protocols::features::HBondFeatures
load_into_pose(utility::sql_database::sessionOP, StructureID, core::pose::Pose &)protocols::features::FeaturesReporterinlinevirtual
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) overrideprotocols::features::HBondFeaturesvirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::features::HBondFeaturesstatic
relevant_residues_mode_protocols::features::FeaturesReporterprotected
report_features(core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, StructureID struct_id, utility::sql_database::sessionOP db_session) overrideprotocols::features::HBondFeaturesvirtual
protocols::features::FeaturesReporter::report_features(core::pose::Pose const &, StructureID, utility::sql_database::sessionOP)protocols::features::FeaturesReporter
scfxn_protocols::features::HBondFeaturesprivate
schema() const protocols::features::FeaturesReporterinlinevirtual
set_relevant_residues_mode(RelevantResiduesMode::T setting)protocols::features::FeaturesReporter
type_name() const overrideprotocols::features::HBondFeaturesvirtual
write_hbond_chem_types_table_schema(utility::sql_database::sessionOP db_session) const protocols::features::HBondFeaturesprivate
write_hbond_dehydrons_table_schema(utility::sql_database::sessionOP db_session) const protocols::features::HBondFeaturesprivate
write_hbond_geom_coords_table_schema(utility::sql_database::sessionOP db_session) const protocols::features::HBondFeaturesprivate
write_hbond_lennard_jones_table_schema(utility::sql_database::sessionOP db_session) const protocols::features::HBondFeaturesprivate
write_hbond_site_atoms_table_schema(utility::sql_database::sessionOP db_session) const protocols::features::HBondFeaturesprivate
write_hbond_site_environment_table_schema(utility::sql_database::sessionOP db_session) const protocols::features::HBondFeaturesprivate
write_hbond_sites_pdb_table_schema(utility::sql_database::sessionOP db_session) const protocols::features::HBondFeaturesprivate
write_hbond_sites_table_schema(utility::sql_database::sessionOP db_session) const protocols::features::HBondFeaturesprivate
write_hbonds_table_schema(utility::sql_database::sessionOP db_session) const protocols::features::HBondFeaturesprivate
write_schema_to_db(utility::sql_database::sessionOP db_session) const overrideprotocols::features::HBondFeaturesvirtual
~FeaturesReporter() overrideprotocols::features::FeaturesReporter
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