FlexPepDockingProtocol.cc File Reference

protocol for docking flexible peptides onto globular proteins More...

#include <core/conformation/ResidueFactory.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/conformation/Conformation.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pack/rotamer_set/UnboundRotamersOperation.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/NoRepackDisulfides.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/rms_util.tmpl.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/constraints/Constraint.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/Constraints.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/Energies.hh>
#include <core/types.hh>
#include <core/scoring/constraints/SiteConstraint.hh>
#include <protocols/flexpep_docking/FlexPepDockingFlags.hh>
#include <protocols/flexpep_docking/FlexPepDockingLowRes.hh>
#include <protocols/flexpep_docking/FlexPepDockingAbInitio.hh>
#include <protocols/flexpep_docking/FlexPepDockingPoseMetrics.hh>
#include <protocols/flexpep_docking/FlexPepDockingProtocol.hh>
#include <protocols/flexpep_docking/FlexPepDockingProtocolCreator.hh>
#include <protocols/scoring/Interface.hh>
#include <protocols/simple_task_operations/RestrictToInterface.hh>
#include <protocols/filters/Filter.fwd.hh>
#include <protocols/jd2/util.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/backrub/BackrubMover.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <protocols/minimization_packing/RotamerTrialsMover.hh>
#include <protocols/minimization_packing/RotamerTrialsMinMover.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/relax/loop/LoopRelaxMover.hh>
#include <protocols/viewer/viewers.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <protocols/rigid/RB_geometry.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/docking.OptionKeys.gen.hh>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/DataMap.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <numeric/random/random.hh>
#include <numeric/angle.functions.hh>
#include <numeric/PCA.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/xyzVector.io.hh>
#include <utility/file/FileName.hh>
#include <utility/tag/Tag.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/keys/Key3Vector.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <string>
#include <set>
#include <sstream>
#include <cstdio>
#include <algorithm>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::flexpep_docking

Functions
static basic::Tracer	TR ("FlexPepDockingProtocol")

Detailed Description

protocol for docking flexible peptides onto globular proteins

Date

August 5, 2008

Author

Barak Raveh / Nir London

Modified by Nawsad Alam

Function Documentation

static basic::Tracer TR ( "FlexPepDockingProtocol"  )

static