core::select::residue_selector::ResidueInSequenceMotifSelector Class Reference

Select residues by motif search This selector takes a regular expression and a position and then finds all matches of the regular expression and selects the n-th residue in each match, where 'n' is the specified position. More...

#include <ResidueInSequenceMotifSelector.hh>

Inheritance diagram for core::select::residue_selector::ResidueInSequenceMotifSelector:

Public Types
typedef core::select::residue_selector::ResidueSelectorOP	ResidueSelectorOP
typedef core::select::residue_selector::ResidueSubset	ResidueSubset

Public Member Functions
	ResidueInSequenceMotifSelector ()
	Constructor. More...
	ResidueInSequenceMotifSelector (std::string regex, core::Size position_in_motif)
	Constructor for derived classes. More...
	~ResidueInSequenceMotifSelector () override
	Destructor. More...
ResidueSelectorOP	clone () const override
	Clone operator. More...
ResidueSubset	apply (core::pose::Pose const &pose) const override
	"Apply" function. More...
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	XML parse. More...
std::string	get_name () const override
	Get the mover class name. More...
Public Member Functions inherited from core::select::residue_selector::ResidueSelector
	ResidueSelector ()
	Constructor. More...
	~ResidueSelector () override
	Destructor. More...
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
	Get the mover class name. More...
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
	Provide XSD information, enabling mechanical validation of input XML. More...

Protected Attributes
std::string	regex_
core::Size	position_in_motif_

Detailed Description

Select residues by motif search This selector takes a regular expression and a position and then finds all matches of the regular expression and selects the n-th residue in each match, where 'n' is the specified position.

Member Typedef Documentation

typedef core::select::residue_selector::ResidueSelectorOP core::select::residue_selector::ResidueInSequenceMotifSelector::ResidueSelectorOP

typedef core::select::residue_selector::ResidueSubset core::select::residue_selector::ResidueInSequenceMotifSelector::ResidueSubset

Constructor & Destructor Documentation

core::select::residue_selector::ResidueInSequenceMotifSelector::ResidueInSequenceMotifSelector

(

)

Constructor.

core::select::residue_selector::ResidueInSequenceMotifSelector::ResidueInSequenceMotifSelector ( std::string  regex, core::Size  position_in_motif  )

inline

Constructor for derived classes.

core::select::residue_selector::ResidueInSequenceMotifSelector::~ResidueInSequenceMotifSelector ( )

override

Destructor.

Member Function Documentation

ResidueInSequenceMotifSelector::ResidueSubset core::select::residue_selector::ResidueInSequenceMotifSelector::apply ( core::pose::Pose const &  pose ) const

overridevirtual

"Apply" function.

Given the pose, generate a vector of bools with entries for every residue in the pose indicating whether each residue is selected ("true") or not ("false").

Implements core::select::residue_selector::ResidueSelector.

References position_in_motif_, regex_, core::select::residue_selector::regex_usable(), core::pose::Pose::sequence(), and core::select::residue_selector::TR().

std::string core::select::residue_selector::ResidueInSequenceMotifSelector::class_name ( )

static

Get the mover class name.

Referenced by get_name(), core::select::residue_selector::ResidueInSequenceMotifSelectorCreator::keyname(), and provide_xml_schema().

core::select::residue_selector::ResidueSelectorOP core::select::residue_selector::ResidueInSequenceMotifSelector::clone ( ) const

overridevirtual

Clone operator.

Clone function.

Copy the current object (creating the copy on the heap) and return an owning pointer to the copy. All ResidueSelectors must implement this.

Copy this object and return owning pointer to the copy (created on the heap).

Implements core::select::residue_selector::ResidueSelector.

std::string core::select::residue_selector::ResidueInSequenceMotifSelector::get_name ( ) const

overridevirtual

Get the mover class name.

Implements core::select::residue_selector::ResidueSelector.

References class_name().

void core::select::residue_selector::ResidueInSequenceMotifSelector::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &    )

overridevirtual

XML parse.

XML tarse.

Parse RosettaScripts tags and set up this mover.

Reimplemented from core::select::residue_selector::ResidueSelector.

References protocols::pack_daemon::error_message, position_in_motif_, and regex_.

void core::select::residue_selector::ResidueInSequenceMotifSelector::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

Provide XSD information, enabling mechanical validation of input XML.

References class_name(), and core::select::residue_selector::xsd_type_definition_w_attributes().

Referenced by core::select::residue_selector::ResidueInSequenceMotifSelectorCreator::provide_xml_schema().

Member Data Documentation

core::Size core::select::residue_selector::ResidueInSequenceMotifSelector::position_in_motif_

protected

Referenced by apply(), and parse_my_tag().

std::string core::select::residue_selector::ResidueInSequenceMotifSelector::regex_

protected

Referenced by apply(), core::select::residue_selector::GlycanSequonsSelector::parse_my_tag(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/core/select/residue_selector/ResidueInSequenceMotifSelector.hh
• src/core/select/residue_selector/ResidueInSequenceMotifSelector.cc