core::pack::guidance_scoreterms::sap::SapConstraintOptions Class Reference

#include <SapConstraintOptions.hh>

Inheritance diagram for core::pack::guidance_scoreterms::sap::SapConstraintOptions:

Public Member Functions
	SapConstraintOptions ()
SapConstraintOptionsOP	clone () const
void	sap_goal (Real goal)
void	sap_lb_goal (Real lb_goal)
void	packing_correction (Real adjustment)
void	penalty_per_sap (Real penalty)
void	full_accuracy_when_scoring (bool full_accuracy)
void	name (std::string const &name)
void	score_selector (select::residue_selector::ResidueSelectorCOP const &sel)
void	sap_calculate_selector (select::residue_selector::ResidueSelectorCOP const &sel)
void	sasa_selector (select::residue_selector::ResidueSelectorCOP const &sel)
void	fast (bool fast)
void	lightning (bool lightning)
Real	sap_goal () const
Real	sap_lb_goal () const
Real	packing_correction () const
Real	penalty_per_sap () const
bool	full_accuracy_when_scoring () const
std::string	name () const
select::residue_selector::ResidueSelectorCOP	score_selector () const
select::residue_selector::ResidueSelectorCOP	sap_calculate_selector () const
select::residue_selector::ResidueSelectorCOP	sasa_selector () const
bool	fast () const
bool	lightning () const
Real	transform_sap_to_score (Real score, bool approximate) const
void	sanity_check () const

Private Attributes
Real	sap_goal_
Real	sap_lb_goal_
Real	packing_correction_
Real	penalty_per_sap_
core::select::residue_selector::ResidueSelectorCOP	score_selector_
core::select::residue_selector::ResidueSelectorCOP	sap_calculate_selector_
core::select::residue_selector::ResidueSelectorCOP	sasa_selector_
bool	fast_
bool	lightning_
bool	full_accuracy_when_scoring_
std::string	name_

Constructor & Destructor Documentation

core::pack::guidance_scoreterms::sap::SapConstraintOptions::SapConstraintOptions

(

)

Member Function Documentation

SapConstraintOptionsOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::clone

(

)

const

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::fast

(

bool

fast

)

References fast(), and fast_.

bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::fast

(

)

const

References fast_, and lightning_.

Referenced by fast().

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::full_accuracy_when_scoring

(

bool

full_accuracy

)

References full_accuracy_when_scoring_.

bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::full_accuracy_when_scoring

(

)

const

References full_accuracy_when_scoring_.

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::lightning

(

bool

lightning

)

References lightning(), and lightning_.

bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::lightning

(

)

const

References lightning_.

Referenced by lightning().

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::name

(

std::string const &

name

)

References name(), and name_.

std::string core::pack::guidance_scoreterms::sap::SapConstraintOptions::name

(

)

const

References name_.

Referenced by name().

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::packing_correction

(

Real

adjustment

)

References packing_correction_.

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::packing_correction

(

)

const

References packing_correction_.

Referenced by transform_sap_to_score().

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::penalty_per_sap

(

Real

penalty

)

References penalty_per_sap_.

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::penalty_per_sap

(

)

const

References penalty_per_sap_.

Referenced by transform_sap_to_score().

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::sanity_check

(

)

const

References sap_goal(), and sap_lb_goal().

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_calculate_selector

(

select::residue_selector::ResidueSelectorCOP const &

sel

)

References sap_calculate_selector_.

select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_calculate_selector

(

)

const

References sap_calculate_selector_, and score_selector_.

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_goal

(

Real

goal

)

References sap_goal_.

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_goal

(

)

const

References sap_goal_.

Referenced by sanity_check(), and transform_sap_to_score().

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_lb_goal

(

Real

lb_goal

)

References sap_lb_goal_.

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_lb_goal

(

)

const

References sap_lb_goal_.

Referenced by sanity_check(), and transform_sap_to_score().

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::sasa_selector

(

select::residue_selector::ResidueSelectorCOP const &

sel

)

References sasa_selector_.

select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::sasa_selector

(

)

const

References sap_calculate_selector_, sasa_selector_, and score_selector_.

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::score_selector

(

select::residue_selector::ResidueSelectorCOP const &

sel

)

References score_selector_.

select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::score_selector

(

)

const

References score_selector_.

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::transform_sap_to_score	(	Real	score,
		bool	approximate
	)		const

References packing_correction(), penalty_per_sap(), sap_goal(), and sap_lb_goal().

Member Data Documentation

bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::fast_

private

Referenced by fast().

bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::full_accuracy_when_scoring_

private

Referenced by full_accuracy_when_scoring().

bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::lightning_

private

Referenced by fast(), and lightning().

std::string core::pack::guidance_scoreterms::sap::SapConstraintOptions::name_

private

Referenced by name().

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::packing_correction_

private

Referenced by packing_correction().

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::penalty_per_sap_

private

Referenced by penalty_per_sap().

core::select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_calculate_selector_

private

Referenced by sap_calculate_selector(), and sasa_selector().

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_goal_

private

Referenced by sap_goal().

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_lb_goal_

private

Referenced by sap_lb_goal().

core::select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::sasa_selector_

private

Referenced by sasa_selector().

core::select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::score_selector_

private

Referenced by sap_calculate_selector(), sasa_selector(), and score_selector().

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The documentation for this class was generated from the following files:

• src/core/pack/guidance_scoreterms/sap/SapConstraintOptions.hh
• src/core/pack/guidance_scoreterms/sap/SapConstraintOptions.cc