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protocols::buns::BuriedUnsatisfiedPolarsCalculator2 Member List

This is the complete list of members for protocols::buns::BuriedUnsatisfiedPolarsCalculator2, including all inherited members.

acc_geom_check(core::pose::Pose const &pose, numeric::xyzVector< core::Real > const &bunsat_xyz, core::conformation::Residue const &test_rsd, core::Size const &test_atom_num, numeric::xyzVector< core::Real > const &test_xyz) const protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
adjacent_bbbb_check(core::Size const &bunsat_resi, std::string const &bunsat_atom_name, core::Size const &test_resi, std::string const &test_atom_name) const protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
AHD_cutoff_protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
all_bur_unsat_polars_protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
assert_calculators()protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
atom_bur_unsat_protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
bunsat_acc_nbr_residue_check(core::pose::Pose const &pose, core::id::AtomID const &bunsat_candidate_atom_id, core::conformation::Residue const &bunsat_rsd, numeric::xyzVector< core::Real > const &bunsat_xyz, core::Size const &test_resi, core::Size &num_hbonds)protocols::buns::BuriedUnsatisfiedPolarsCalculator2privatevirtual
bunsat_donor_nbr_residue_check(core::pose::Pose const &pose, core::id::AtomID const &bunsat_candidate_atom_id, core::conformation::Residue const &bunsat_rsd, numeric::xyzVector< core::Real > const &bunsat_xyz, core::Size const test_resi, core::Size &num_hbonds)protocols::buns::BuriedUnsatisfiedPolarsCalculator2privatevirtual
bunsats_thorough_check(core::pose::Pose const &pose, core::id::AtomID_Map< bool > &bunsat_thorough_atomid_map)protocols::buns::BuriedUnsatisfiedPolarsCalculator2privatevirtual
BuriedUnsatisfiedPolarsCalculator2(std::string const &weak_bunsat_calc_)protocols::buns::BuriedUnsatisfiedPolarsCalculator2
BuriedUnsatisfiedPolarsCalculator2(std::string const &weak_bunsat_calc, std::set< core::Size > const &special_region)protocols::buns::BuriedUnsatisfiedPolarsCalculator2
clone() const overrideprotocols::buns::BuriedUnsatisfiedPolarsCalculator2inlinevirtual
dist_cutoff_protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
don_geom_check(core::pose::Pose const &pose, core::conformation::Residue const &bunsat_rsd, core::Size const &bunsat_atom_num, numeric::xyzVector< core::Real > const &bunsat_xyz, numeric::xyzVector< core::Real > const &test_xyz) const protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
EnergyDependentCalculator()core::pose::metrics::EnergyDependentCalculatorinline
generous_hbond() const protocols::buns::BuriedUnsatisfiedPolarsCalculator2privatevirtual
generous_hbonds_protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
get(std::string const &key, basic::MetricValueBase &val, Pose const &this_pose) overridecore::pose::metrics::EnergyDependentCalculatorinlinevirtual
get(std::string const &key, Pose const &this_pose) overridecore::pose::metrics::EnergyDependentCalculatorinlinevirtual
hxl_dist_cutoff_protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
layered_sasa_protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
lookup(std::string const &key, basic::MetricValueBase *valptr) const overrideprotocols::buns::BuriedUnsatisfiedPolarsCalculator2protectedvirtual
metal_check(core::conformation::Residue const &test_rsd, numeric::xyzVector< core::Real > const &bunsat_xyz, numeric::xyzVector< core::Real > const &test_xyz) const protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
metal_dist_cutoff_protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
name_of_weak_bunsat_calc() const protocols::buns::BuriedUnsatisfiedPolarsCalculator2inline
name_of_weak_bunsat_calc_protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
notify_energy_change() overridecore::pose::metrics::EnergyDependentCalculatorinlinevirtual
notify_structure_change()core::pose::metrics::PoseMetricCalculatorinlinevirtual
PoseMetricCalculator()core::pose::metrics::PoseMetricCalculatorinline
print(std::string const &key) const overrideprotocols::buns::BuriedUnsatisfiedPolarsCalculator2protectedvirtual
recompute(core::pose::Pose const &this_pose) overrideprotocols::buns::BuriedUnsatisfiedPolarsCalculator2protectedvirtual
residue_bur_unsat_polars_protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
sasa_burial_cutoff_protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
satisfaction_cutoff(std::string atom_type)protocols::buns::BuriedUnsatisfiedPolarsCalculator2privatestatic
self_scsc(core::conformation::Residue const &bunsat_rsd, core::Size const &bunsat_resi, core::Size const &bunsat_atom_num, core::conformation::Residue const &test_rsd, core::Size const &test_resi, core::Size const &test_atom_num) const protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
set_AHD_cutoff(core::Real const &val)protocols::buns::BuriedUnsatisfiedPolarsCalculator2inline
set_dist_cutoff(core::Real const &val)protocols::buns::BuriedUnsatisfiedPolarsCalculator2inline
set_generous_hbonds(bool val)protocols::buns::BuriedUnsatisfiedPolarsCalculator2inline
set_hxl_dist_cutoff(core::Real const &val)protocols::buns::BuriedUnsatisfiedPolarsCalculator2inline
set_layered_sasa(bool val)protocols::buns::BuriedUnsatisfiedPolarsCalculator2inline
set_metal_dist_cutoff(core::Real const &val)protocols::buns::BuriedUnsatisfiedPolarsCalculator2inline
set_sasa_burial_cutoff(core::Real const &val)protocols::buns::BuriedUnsatisfiedPolarsCalculator2inline
set_sulph_dist_cutoff(core::Real const &val)protocols::buns::BuriedUnsatisfiedPolarsCalculator2inline
show()protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
single_bunsat_thorough_check(core::pose::Pose const &pose, core::id::AtomID const &bunsat_candidate_atom_id)protocols::buns::BuriedUnsatisfiedPolarsCalculator2privatevirtual
special_region_protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
special_region_bur_unsat_polars_protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
sulph_dist_cutoff_protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
sulphur_bond_check(core::conformation::Residue const &test_rsd, core::Size const &test_atom_num, numeric::xyzVector< core::Real > const &bunsat_xyz, numeric::xyzVector< core::Real > const &test_xyz) const protocols::buns::BuriedUnsatisfiedPolarsCalculator2private
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