scoring → conformation Relation

File in src/core/scoring	Includes file in src/core/conformation
aa_composition_energy / AACompositionConstraint.cc	Conformation.hh
aa_composition_energy / AACompositionEnergySetup.cc	Residue.hh
aa_composition_energy / AACompositionEnergySetup.hh	Residue.fwd.hh
constraints / AmbiguousConstraint.hh	Conformation.fwd.hh
constraints / AmbiguousNMRConstraint.hh	Conformation.fwd.hh
constraints / AmbiguousNMRDistanceConstraint.hh	Conformation.fwd.hh
constraints / AngleConstraint.cc	Conformation.hh
APBSWrapper.cc	Residue.hh
APBSWrapper.hh	Residue.fwd.hh
etable / atom_pair_energy_inline.hh	Atom.hh
etable / atom_pair_energy_inline.hh	Residue.hh
atomic_depth / AtomicDepth.cc	Residue.hh
atomic_depth / AtomicDepth.cc	util.hh
atomic_depth / AtomicDepth.hh	Atom.fwd.hh
constraints / AtomPairConstraint.cc	Conformation.hh
constraints / AtomToAxisConstraint.cc	Conformation.hh
constraints / BackboneStubConstraint.cc	Residue.hh
constraints / BackboneStubConstraint.cc	ResidueFactory.hh
constraints / BackboneStubConstraint.hh	Residue.fwd.hh
constraints / BackboneStubLinearConstraint.cc	Residue.hh
constraints / BackboneStubLinearConstraint.cc	ResidueFactory.hh
constraints / BackboneStubLinearConstraint.hh	Residue.fwd.hh
dna / base_geometry.cc	Residue.hh
dna / base_geometry.hh	Residue.fwd.hh
etable / BaseEtableEnergy.hh	Atom.hh
etable / BaseEtableEnergy.hh	Residue.hh
etable / BaseEtableEnergy.tmpl.hh	RotamerSetBase.hh
constraints / BasePairConstraint.hh	Conformation.fwd.hh
constraints / BigBinConstraint.hh	Conformation.fwd.hh
bin_transitions / BinTransitionCalculator.hh	Conformation.hh
bin_transitions / BinTransitionCalculator.hh	Residue.hh
bin_transitions / BinTransitionData.hh	Conformation.hh
bin_transitions / BinTransitionData.hh	Residue.hh
methods / branch_energy_util.cc	Residue.fwd.hh
methods / branch_energy_util.cc	Residue.hh
methods / branch_energy_util.hh	Residue.fwd.hh
carbon_hbonds / CarbonHBondEnergy.cc	Residue.hh
CenRotEnvPairPotential.cc	Residue.hh
CenRotEnvPairPotential.hh	Residue.fwd.hh
disulfides / CentroidDisulfideEnergyContainer.cc	Residue.hh
disulfides / CentroidDisulfidePotential.cc	Conformation.hh
disulfides / CentroidDisulfidePotential.cc	Residue.hh
disulfides / CentroidDisulfidePotential.hh	Residue.fwd.hh
methods / chainbreak_util.cc	Residue.hh
methods / chainbreak_util.hh	Residue.fwd.hh
ChemicalShiftAnisotropy.cc	Residue.hh
packing / compute_holes_score_res.cc	Residue.hh
constraints / ConstantConstraint.hh	Conformation.fwd.hh
constraints / Constraint.hh	Conformation.fwd.hh
constraints / Constraints.hh	Conformation.fwd.hh
constraints / Constraints.hh	Residue.fwd.hh
constraints / ConstraintsEnergy.cc	Residue.hh
constraints / ConstraintsEnergy.hh	Residue.fwd.hh
constraints / ConstraintSet.cc	Conformation.hh
constraints / ConstraintSet.cc	signals / ConnectionEvent.hh
constraints / ConstraintSet.cc	signals / LengthEvent.hh
constraints / ConstraintSet.hh	Conformation.fwd.hh
constraints / ConstraintSet.hh	signals / ConnectionEvent.fwd.hh
constraints / ConstraintSet.hh	signals / LengthEvent.fwd.hh
constraints / ConstraintSet.hh	Residue.fwd.hh
sc / ContactMolecularSurfaceCalculator.cc	Residue.hh
sc / ContactMolecularSurfaceCalculator.hh	Residue.fwd.hh
methods / ContextDependentOneBodyEnergy.hh	Residue.fwd.hh
methods / ContextDependentTwoBodyEnergy.hh	Residue.fwd.hh
methods / ContextIndependentOneBodyEnergy.hh	Residue.fwd.hh
constraints / CoordinateConstraint.cc	Conformation.hh
constraints / CoordinateConstraint.hh	Conformation.fwd.hh
etable / count_pair / CountPair1B.hh	Atom.hh
etable / count_pair / CountPair1B.hh	Residue.hh
etable / count_pair / CountPair2B.hh	Atom.hh
etable / count_pair / CountPair2B.hh	Residue.hh
etable / count_pair / CountPairFactory.cc	Residue.hh
etable / count_pair / CountPairFactory.hh	Residue.fwd.hh
etable / count_pair / CountPairFunction.hh	Residue.fwd.hh
etable / count_pair / CountPairGeneric.cc	Atom.hh
etable / count_pair / CountPairGeneric.cc	PseudoBond.hh
etable / count_pair / CountPairGeneric.cc	Residue.hh
etable / count_pair / CountPairIntraRes.hh	Atom.hh
etable / count_pair / CountPairIntraRes.hh	Residue.hh
etable / count_pair / CountPairNone.hh	Residue.fwd.hh
elec / CountPairRepresentative.hh	Residue.hh
trie / CPDataCorrespondence.cc	PseudoBond.hh
trie / CPDataCorrespondence.cc	Residue.hh
trie / CPDataCorrespondence.cc	RotamerSetBase.hh
trie / CPDataCorrespondence.hh	Residue.fwd.hh
trie / CPDataCorrespondence.hh	RotamerSetBase.fwd.hh
interface_ / DDPscore.cc	Residue.hh
methods / dfire / DFIRE_Potential.cc	Residue.hh
methods / dfire / DFIRE_Potential.hh	Residue.fwd.hh
constraints / DihedralConstraint.cc	Conformation.hh
constraints / DihedralPairConstraint.cc	Conformation.hh
DipolarCoupling.cc	Residue.hh
dna / DirectReadoutPotential.cc	Residue.hh
dna / DirectReadoutPotential.hh	Residue.fwd.hh
constraints / DistancePairConstraint.cc	Conformation.hh
disulfides / DisulfideAtomIndices.cc	Residue.hh
disulfides / DisulfideAtomIndices.hh	Residue.fwd.hh
disulfides / DisulfideMatchingDatabase.cc	Atom.hh
disulfides / DisulfideMatchingDatabase.cc	Residue.hh
disulfides / DisulfideMatchingEnergyContainer.cc	Residue.hh
disulfides / DisulfideMatchingPotential.cc	Atom.hh
disulfides / DisulfideMatchingPotential.cc	Conformation.hh
disulfides / DisulfideMatchingPotential.cc	Residue.hh
disulfides / DisulfideMatchingPotential.cc	util.hh
disulfides / DisulfideMatchingPotential.hh	Residue.fwd.hh
dna / DNA_BasePotential.cc	Residue.hh
dna / DNA_BasePotential.hh	Residue.fwd.hh
dna / DNA_DihedralPotential.cc	Residue.hh
dna / DNA_DihedralPotential.hh	Residue.fwd.hh
dna / DNA_EnvPairPotential.cc	Residue.hh
dna / DNA_EnvPairPotential.hh	Residue.fwd.hh
dna / DNABFormPotential.hh	Residue.hh
dna / DNATorsionPotential.hh	Residue.hh
DockingScoreFunction.cc	Conformation.hh
DockingScoreFunction.hh	symmetry / SymmetricConformation.fwd.hh
DockingScoreFunction.hh	symmetry / SymmetryInfo.fwd.hh
dssp / Dssp.cc	Residue.hh
dssp / Dssp.cc	symmetry / SymmetryInfo.hh
elec / electrie / ElecAtom.cc	Residue.hh
elec / electrie / ElecAtom.hh	Atom.hh
elec / electrie / ElecAtom.hh	Residue.fwd.hh
electron_density / ElectronDensity.cc	Atom.hh
electron_density / ElectronDensity.cc	Residue.hh
electron_density / ElectronDensity.cc	symmetry / SymmetricConformation.hh
electron_density / ElectronDensity.cc	symmetry / SymmetryInfo.hh
electron_density / ElectronDensity.hh	Atom.fwd.hh
electron_density / ElectronDensity.hh	Residue.fwd.hh
electron_density / ElectronDensity.hh	symmetry / SymmetryInfo.hh
electron_density_atomwise / ElectronDensityAtomwise.cc	Residue.hh
electron_density_atomwise / ElectronDensityAtomwise.cc	symmetry / SymmetryInfo.hh
electron_density_atomwise / ElectronDensityAtomwise.hh	Residue.fwd.hh
electron_density_atomwise / ElectronDensityAtomwise.hh	symmetry / SymmetryInfo.fwd.hh
Energies.cc	find_neighbors.hh
Energies.cc	PointGraph.hh
Energies.cc	PointGraphData.hh
Energies.hh	PointGraph.fwd.hh
methods / EnergyMethod.hh	Residue.fwd.hh
methods / EnergyMethod.hh	RotamerSetBase.fwd.hh
EnvPairPotential.cc	Residue.hh
EnvPairPotential.hh	Residue.fwd.hh
epr_deer / EPRSpinLabel.cc	Atom.hh
epr_deer / EPRSpinLabel.cc	Residue.hh
epr_deer / EPRSpinLabel.cc	symmetry / SymmetricConformation.hh
epr_deer / EPRSpinLabel.cc	symmetry / SymmetryInfo.fwd.hh
epr_deer / EPRSpinLabel.cc	symmetry / SymmetryInfo.hh
etable / Etable.hh	Atom.hh
etable / etrie / EtableAtom.cc	Atom.hh
etable / etrie / EtableAtom.cc	Residue.hh
etable / etrie / EtableAtom.hh	Atom.hh
etable / etrie / EtableAtom.hh	Residue.fwd.hh
elec / FA_ElecEnergy.cc	residue_datacache.hh
elec / FA_ElecEnergy.cc	RotamerSetBase.hh
elec / FA_ElecEnergy.cc	RotamerSetCacheableDataType.hh
constraints / FabConstraint.cc	Conformation.hh
constraints / FabConstraint.cc	Residue.hh
constraints / FabConstraint.hh	Conformation.fwd.hh
facts / FACTSPose.cc	Residue.hh
facts / FACTSPose.cc	ResidueFactory.hh
facts / FACTSPose.cc	RotamerSetBase.hh
facts / FACTSPose.cc	RotamerSetCacheableDataType.hh
facts / FACTSPose.hh	Residue.hh
facts / FACTSPose.hh	RotamerSetBase.hh
facts / FACTSPotential.cc	Residue.hh
facts / FACTSPotential.cc	ResidueFactory.hh
facts / FACTSPotential.cc	RotamerSetBase.hh
facts / FACTSPotential.cc	RotamerSetCacheableDataType.hh
facts / FACTSPotential.hh	Residue.hh
facts / FACTSPotential.hh	RotamerSetBase.hh
facts / FACTSResidue.cc	Residue.fwd.hh
facts / FACTSResidue.cc	Residue.hh
facts / FACTSResidue.cc	ResidueFactory.hh
facts / FACTSResidue.cc	RotamerSetBase.hh
facts / FACTSResidue.cc	RotamerSetCacheableDataType.hh
facts / FACTSResidue.hh	Residue.hh
facts / FACTSResidue.hh	RotamerSetBase.hh
fiber_diffraction / FiberDiffraction.hh	Atom.fwd.hh
fiber_diffraction / FiberDiffraction.hh	Residue.fwd.hh
func / FourPointsFunc.cc	Residue.hh
custom_pair_distance / FullatomCustomPairDistanceEnergy.cc	Residue.hh
disulfides / FullatomDisulfideEnergyContainer.cc	Residue.hh
disulfides / FullatomDisulfideEnergyContainer.cc	symmetry / SymmetryInfo.hh
disulfides / FullatomDisulfidePotential.cc	Residue.hh
disulfides / FullatomDisulfidePotential.hh	Residue.fwd.hh
loop_graph / evaluator / GaussianChainFuncPotentialEvaluator.cc	Residue.hh
GenBornPotential.cc	Residue.hh
GenBornPotential.cc	ResidueFactory.hh
GenBornPotential.cc	RotamerSetBase.hh
GenBornPotential.cc	RotamerSetCacheableDataType.hh
GenBornPotential.hh	Residue.hh
GenBornPotential.hh	RotamerSetBase.fwd.hh
GenericBondedPotential.cc	Residue.hh
GenericBondedPotential.hh	Residue.hh
geometric_solvation / GeometricSolEnergyEvaluator.cc	Residue.hh
geometric_solvation / GeometricSolEnergyEvaluator.hh	Residue.fwd.hh
elec / GroupElec.cc	Residue.hh
elec / GroupElec.cc	RotamerSetBase.hh
hbonds / HBEvalTuple.cc	Residue.hh
hbonds / HBEvalTuple.hh	Residue.fwd.hh
hbonds / HBondEnergy.cc	Conformation.hh
hbonds / HBondEnergy.cc	membrane / MembraneInfo.hh
hbonds / HBondEnergy.cc	Residue.hh
hbonds / HBondEnergy.cc	RotamerSetBase.hh
hbonds / hbonds.cc	Conformation.hh
hbonds / hbonds.cc	membrane / MembraneInfo.hh
hbonds / hbonds.cc	Residue.hh
hbonds / hbonds.hh	Residue.fwd.hh
hbonds / hbonds_geom.cc	Residue.hh
hbonds / hbonds_geom.hh	Residue.fwd.hh
hbonds / HBondSet.cc	Residue.hh
hbonds / HBondSet.hh	Residue.fwd.hh
HydroxylTorsionPotential.cc	Residue.hh
HydroxylTorsionPotential.hh	Residue.fwd.hh
constraints / KofNConstraint.cc	Conformation.fwd.hh
constraints / KofNConstraint.hh	Conformation.fwd.hh
sasa / LeGrandSasa.cc	Residue.hh
sasa / LeGrandSasa.hh	Residue.fwd.hh
lkball / LK_BallEnergy.cc	Residue.hh
lkball / LK_BallEnergy.cc	residue_datacache.hh
lkball / LK_BallEnergy.cc	ResidueFactory.hh
lkball / LK_BallEnergy.cc	RotamerSetBase.hh
lkball / LK_BallEnergy.cc	RotamerSetCacheableDataType.hh
lkball / LK_BallEnergy.hh	Atom.fwd.hh
lkball / LK_BallEnergy.hh	RotamerSetBase.fwd.hh
lkball / LK_BallInfo.cc	Residue.hh
lkball / LK_BallInfo.cc	ResidueFactory.hh
lkball / LK_BallInfo.hh	Residue.fwd.hh
lkball / lkbtrie / LKBAtom.hh	Atom.hh
constraints / LocalCoordinateConstraint.cc	Conformation.hh
constraints / LocalCoordinateConstraint.hh	Residue.hh
loop_graph / LoopGraph.cc	Residue.hh
Membrane_FAPotential.cc	Residue.hh
Membrane_FAPotential.hh	Residue.hh
MembranePotential.cc	Conformation.hh
MembranePotential.cc	Residue.hh
MembranePotential.cc	ResidueFactory.hh
MembranePotential.cc	symmetry / SymmetricConformation.hh
MembranePotential.cc	symmetry / SymmetryInfo.hh
MembranePotential.hh	Residue.hh
constraints / MembraneSpanConstraint.cc	membrane / Exceptions.hh
constraints / MembraneSpanConstraint.cc	membrane / MembraneInfo.hh
constraints / MembraneSpanConstraint.cc	Residue.hh
constraints / MembraneSpanConstraint.cc	membrane / Span.hh
constraints / MembraneSpanConstraint.cc	membrane / SpanningTopology.hh
constraints / MembraneSpanConstraint.hh	Conformation.fwd.hh
constraints / MembraneSpanConstraint.hh	membrane / Exceptions.hh
constraints / MembraneSpanConstraint.hh	membrane / MembraneInfo.hh
constraints / MembraneSpanConstraint.hh	Residue.fwd.hh
constraints / MembraneSpanConstraint.hh	membrane / Span.hh
constraints / MembraneSpanConstraint.hh	membrane / SpanningTopology.hh
constraints / MembraneSpanTermZConstraint.cc	membrane / Exceptions.hh
constraints / MembraneSpanTermZConstraint.cc	membrane / MembraneInfo.hh
constraints / MembraneSpanTermZConstraint.cc	Residue.hh
constraints / MembraneSpanTermZConstraint.cc	membrane / Span.hh
constraints / MembraneSpanTermZConstraint.cc	membrane / SpanningTopology.hh
constraints / MembraneSpanTermZConstraint.hh	Conformation.fwd.hh
constraints / MembraneSpanTermZConstraint.hh	membrane / Exceptions.hh
constraints / MembraneSpanTermZConstraint.hh	membrane / MembraneInfo.hh
constraints / MembraneSpanTermZConstraint.hh	Residue.fwd.hh
constraints / MembraneSpanTermZConstraint.hh	membrane / Span.hh
constraints / MembraneSpanTermZConstraint.hh	membrane / SpanningTopology.hh
magnesium / MgKnowledgeBasedPotential.cc	Residue.hh
magnesium / MgKnowledgeBasedPotential.hh	Residue.fwd.hh
mhc_epitope_energy / MHCEpitopeConstraint.cc	Conformation.hh
mhc_epitope_energy / MHCEpitopeEnergySetup.cc	Residue.hh
mhc_epitope_energy / MHCEpitopeEnergySetup.hh	Residue.fwd.hh
MinimizationGraph.cc	symmetry / SymmetricConformation.hh
MinimizationGraph.cc	symmetry / SymmetryInfo.hh
MinimizationGraph.hh	Residue.fwd.hh
MinScoreScoreFunction.cc	Conformation.hh
MinScoreScoreFunction.hh	symmetry / SymmetricConformation.fwd.hh
MinScoreScoreFunction.hh	symmetry / SymmetryInfo.fwd.hh
methods / MMBondAngleEnergy.cc	Residue.hh
mm / MMBondAngleResidueTypeParamSet.cc	Conformation.hh
mm / MMBondAngleResidueTypeParamSet.hh	Conformation.fwd.hh
methods / MMBondLengthEnergy.cc	Residue.hh
mm / mmtrie / MMEnergyTableAtom.cc	Atom.hh
mm / mmtrie / MMEnergyTableAtom.cc	Residue.hh
mm / mmtrie / MMEnergyTableAtom.hh	Atom.hh
mm / mmtrie / MMEnergyTableAtom.hh	Residue.fwd.hh
methods / MMLJEnergyInter.cc	Residue.hh
methods / MMLJEnergyInter.cc	RotamerSetBase.hh
methods / MMLJEnergyIntra.cc	Residue.hh
methods / MMTorsionEnergy.cc	Residue.hh
sc / MolecularSurfaceCalculator.cc	Residue.hh
sc / MolecularSurfaceCalculator.hh	Residue.fwd.hh
motif / motif_hash_stuff.cc	Residue.hh
motif / motif_hash_stuff.cc	ResidueFactory.hh
motif / motif_hash_stuff.cc	symmetry / SymmetryInfo.hh
motif / motif_hash_stuff.cc	symmetry / util.hh
membrane / MPNonHelixPenalty.cc	Conformation.hh
membrane / MPNonHelixPenalty.cc	membrane / MembraneInfo.hh
membrane / MPNonHelixPenalty.cc	Residue.hh
membrane / MPNonHelixPenalty.cc	membrane / Span.hh
membrane / MPNonHelixPenalty.cc	membrane / SpanningTopology.hh
membrane / MPNonHelixPenalty.cc	symmetry / SymmetricConformation.hh
membrane / MPNonHelixPenalty.cc	symmetry / SymmetryInfo.hh
membrane / MPNonHelixPenalty.hh	membrane / Span.fwd.hh
membrane / MPTerminiPenalty.cc	Conformation.hh
membrane / MPTerminiPenalty.cc	membrane / MembraneInfo.hh
membrane / MPTerminiPenalty.cc	Residue.hh
membrane / MPTMProjPenalty.cc	Conformation.hh
membrane / MPTMProjPenalty.cc	membrane / MembraneInfo.hh
membrane / MPTMProjPenalty.cc	Residue.hh
membrane / MPTMProjPenalty.cc	membrane / Span.hh
membrane / MPTMProjPenalty.cc	membrane / SpanningTopology.hh
membrane / MPTMProjPenalty.cc	symmetry / SymmetricConformation.hh
membrane / MPTMProjPenalty.cc	symmetry / SymmetryInfo.hh
membrane / MPTMProjPenalty.hh	membrane / Span.fwd.hh
constraints / MultiConstraint.hh	Conformation.fwd.hh
MultipoleElecPotential.cc	Conformation.hh
MultipoleElecPotential.cc	Residue.hh
MultipoleElecPotential.cc	ResidueFactory.hh
MultipoleElecPotential.cc	RotamerSetBase.hh
MultipoleElecPotential.cc	RotamerSetCacheableDataType.hh
MultipoleElecPotential.hh	Residue.hh
MultipoleElecPotential.hh	RotamerSetBase.fwd.hh
constraints / NamedAngleConstraint.cc	Residue.hh
constraints / NamedAtomPairConstraint.cc	Residue.hh
constraints / NamedDihedralConstraint.cc	Residue.hh
NeighborList.cc	Residue.hh
NeighborList.tmpl.hh	Conformation.hh
NeighborList.tmpl.hh	find_neighbors.hh
NeighborList.tmpl.hh	PointGraph.hh
netcharge_energy / NetChargeConstraint.cc	Conformation.hh
netcharge_energy / NetChargeEnergySetup.cc	Residue.hh
netcharge_energy / NetChargeEnergySetup.hh	Residue.fwd.hh
nmer / NMerPSSMEnergy.cc	Conformation.hh
nmer / NMerPSSMEnergy.cc	Residue.hh
nmer / NMerRefEnergy.cc	Conformation.hh
nmer / NMerRefEnergy.cc	Residue.hh
nmer / NMerSVMEnergy.cc	Conformation.hh
nmer / NMerSVMEnergy.cc	Residue.hh
nmr / NMRDummySpinlabelEnsemble.cc	Residue.functions.hh
nmr / NMRDummySpinlabelEnsemble.cc	Residue.hh
nmr / NMRDummySpinlabelEnsemble.cc	ResidueFactory.hh
nmr / NMRDummySpinlabelEnsemble.hh	Residue.fwd.hh
nmr / NMRDummySpinlabelVoxelGrid.hh	Residue.hh
nmr / NMRGridSearch.cc	Residue.hh
nmr / NMRSpinlabel.cc	Residue.hh
nmr / NMRSpinlabel.hh	Residue.fwd.hh
constraints / NonResidueTypeConstraint.cc	Residue.hh
constraints / NonResidueTypeConstraint.hh	Conformation.fwd.hh
hbonds / NPDHBondSet.cc	Residue.hh
hbonds / NPDHBondSet.hh	Residue.fwd.hh
nv / NVscore.cc	Residue.hh
OmegaTether.cc	Residue.hh
OmegaTether.hh	Residue.fwd.hh
methods / OneBodyEnergy.hh	Residue.fwd.hh
orbitals / OrbitalsScore.cc	Conformation.hh
orbitals / OrbitalsScore.cc	Residue.hh
orbitals / OrbitalsScore.cc	RotamerSetBase.hh
orbitals / OrbitalsStatistics.cc	Residue.hh
P_AA.cc	Residue.hh
P_AA.hh	Residue.fwd.hh
P_AA_ABEGO3.cc	Residue.hh
P_AA_ABEGO3.hh	Residue.fwd.hh
P_AA_ss.cc	Residue.hh
P_AA_ss.hh	Residue.fwd.hh
PairEPotential.cc	Residue.hh
PairEPotential.hh	Residue.fwd.hh
nmr / pcs / PCSData.cc	Residue.hh
nmr / pcs / PCSSingleSet.cc	Residue.hh
nmr / pcs / PCSSingleSet.cc	symmetry / SymmetricConformation.hh
nmr / pcs / PCSSingleSet.cc	symmetry / SymmetryInfo.hh
cryst / PhenixInterface.cc	Residue.hh
cryst / PhenixInterface.cc	ResidueFactory.hh
cryst / PhenixInterface.cc	symmetry / SymmetricConformation.hh
cryst / PhenixInterface.cc	symmetry / SymmetryInfo.hh
cryst / PhenixInterface.cc	util.hh
cryst / PhenixInterface.hh	Residue.fwd.hh
PointWaterPotential.cc	Residue.hh
PointWaterPotential.hh	Residue.fwd.hh
PoissonBoltzmannPotential.cc	Residue.hh
PoissonBoltzmannPotential.hh	Residue.fwd.hh
PolymerBondedEnergyContainer.cc	Residue.hh
PolymerBondedEnergyContainer.cc	symmetry / SymmetryInfo.hh
power_diagram / PowerDiagram.cc	Residue.hh
nmr / pre / PREData.cc	Residue.hh
nmr / pre / PREMultiSet.cc	Residue.hh
nmr / pre / PREMultiSet.cc	symmetry / SymmetricConformation.hh
nmr / pre / PREMultiSet.cc	symmetry / SymmetryInfo.hh
nmr / pre / PRESingleSet.cc	Residue.hh
nmr / pre / PRESingleSet.cc	symmetry / SymmetryInfo.hh
ProQPotential.cc	Conformation.hh
ProQPotential.cc	Residue.hh
ProQPotential.cc	symmetry / SymmetricConformation.hh
ProQPotential.cc	symmetry / SymmetryInfo.hh
Ramachandran.cc	ppo_torsion_bin.hh
Ramachandran.cc	Residue.hh
Ramachandran.cc	util.hh
Ramachandran.hh	ppo_torsion_bin.fwd.hh
Ramachandran.hh	Residue.fwd.hh
Ramachandran2B.cc	ppo_torsion_bin.hh
Ramachandran2B.cc	Residue.hh
Ramachandran2B.hh	ppo_torsion_bin.fwd.hh
Ramachandran2B.hh	Residue.fwd.hh
RamaPrePro.cc	Conformation.hh
RamaPrePro.cc	Residue.functions.hh
RamaPrePro.cc	Residue.hh
RamaPrePro.hh	Conformation.fwd.hh
RamaPrePro.hh	Residue.fwd.hh
nmr / rdc / RDCData.cc	Residue.hh
nmr / rdc / RDCMultiSet.cc	Residue.hh
nmr / rdc / RDCMultiSet.cc	symmetry / SymmetricConformation.hh
nmr / rdc / RDCMultiSet.cc	symmetry / SymmetryInfo.hh
nmr / rdc / RDCSingleSet.cc	Residue.hh
nmr / rdc / RDCSingleSet.cc	symmetry / SymmetryInfo.hh
ResidualDipolarCoupling.cc	Residue.hh
annealing / ResidueArrayAnnealableEnergy.hh	Residue.fwd.hh
constraints / ResidueCouplingConstraint.cc	Residue.hh
constraints / ResidueCouplingConstraint.hh	Conformation.fwd.hh
ResidueNeighborList.cc	Atom.hh
ResidueNeighborList.cc	Residue.hh
ResidueNeighborList.hh	Residue.fwd.hh
constraints / ResidueTypeConstraint.cc	Residue.hh
constraints / ResidueTypeConstraint.hh	Conformation.fwd.hh
constraints / ResidueTypeLinkingConstraint.cc	Residue.hh
constraints / ResidueTypeLinkingConstraint.hh	Conformation.fwd.hh
rms_util.cc	Residue.hh
rms_util.cc	symmetry / SymmetricConformation.hh
rms_util.cc	symmetry / SymmetryInfo.hh
rms_util.hh	Residue.fwd.hh
rms_util.tmpl.hh	Residue.hh
rms_util.tmpl.hh	symmetry / SymmetricConformation.hh
rms_util.tmpl.hh	symmetry / SymmetryInfo.hh
rna / RNA_CentroidInfo.cc	Residue.hh
rna / RNA_CentroidInfo.hh	Residue.fwd.hh
rna / chemical_shift / RNA_ChemicalShiftPotential.cc	Atom.hh
rna / chemical_shift / RNA_ChemicalShiftPotential.cc	Residue.hh
rna / chemical_shift / RNA_CS_MagneticAnisotropy.hh	Residue.hh
rna / chemical_shift / RNA_CS_Parameters.hh	Residue.hh
rna / chemical_shift / RNA_CS_RingCurrent.hh	Residue.hh
rna / chemical_shift / RNA_CS_Util.hh	Residue.hh
rna / data / RNA_DMS_Potential.cc	Residue.hh
rna / data / RNA_DMS_Potential.cc	ResidueFactory.hh
rna / data / RNA_DMS_Potential.hh	Residue.fwd.hh
rna / RNA_LowResolutionPotential.cc	Residue.hh
rna / RNA_LowResolutionPotential.cc	ResidueFactory.hh
rna / RNA_LowResolutionPotential.hh	Residue.fwd.hh
rna / RNA_ScoringInfo.hh	Residue.fwd.hh
rna / RNA_SuitePotential.cc	Residue.hh
rna / RNA_SuitePotential.hh	Residue.fwd.hh
rna / RNA_TorsionPotential.cc	Conformation.hh
rna / RNA_TorsionPotential.hh	Residue.fwd.hh
rna / RNP_LowResPairDistPotential.cc	Residue.hh
rna / RNP_LowResPairDistPotential.hh	Residue.fwd.hh
rna / RNP_LowResPotential.cc	Residue.hh
rna / RNP_LowResPotential.hh	Residue.fwd.hh
rna / RNP_LowResStackData.cc	Residue.hh
rna / RNP_LowResStackData.hh	Residue.fwd.hh
trie / RotamerTrieBase.hh	AbstractRotamerTrie.hh
constraints / RTConstraint.cc	Conformation.hh
constraints / RTConstraint.hh	Conformation.fwd.hh
sasa.cc	Residue.hh
sasa.hh	Residue.fwd.hh
sasa / SasaMethod.cc	Residue.hh
sasa / SasaMethod.hh	Residue.fwd.hh
SASAPotential.cc	Residue.hh
SASAPotential.cc	ResidueFactory.hh
SASAPotential.hh	Residue.hh
ScoreFunction.cc	Residue.hh
ScoreFunction.cc	symmetry / SymmetricConformation.hh
ScoreFunction.cc	symmetry / SymmetryInfo.hh
ScoreFunction.hh	Residue.fwd.hh
ScoreFunction.hh	RotamerSetBase.fwd.hh
SecondaryStructurePotential.cc	Conformation.hh
SecondaryStructurePotential.cc	Residue.hh
SecondaryStructurePotential.cc	symmetry / SymmetricConformation.hh
SecondaryStructurePotential.cc	symmetry / SymmetryInfo.hh
SecondaryStructurePotential.hh	symmetry / SymmetricConformation.fwd.hh
SecondaryStructurePotential.hh	symmetry / SymmetryInfo.fwd.hh
aa_composition_energy / SequenceConstraint.cc	Conformation.hh
constraints / SequenceProfileConstraint.cc	Residue.hh
dna / setup.cc	Residue.hh
sc / ShapeComplementarityCalculator.cc	Residue.hh
sc / ShapeComplementarityCalculator.hh	Residue.fwd.hh
sc / ShapeSimilarityCalculator.cc	Residue.hh
sc / ShapeSimilarityCalculator.hh	Residue.fwd.hh
methods / ShortRangeTwoBodyEnergy.cc	Residue.hh
methods / ShortRangeTwoBodyEnergy.cc	RotamerSetBase.hh
constraints / SiteConstraint.cc	Conformation.hh
constraints / SiteConstraint.hh	Conformation.fwd.hh
constraints / SiteConstraintResidues.cc	Conformation.hh
constraints / SiteConstraintResidues.hh	Conformation.fwd.hh
SmoothEnvPairPotential.cc	Residue.hh
SmoothEnvPairPotential.cc	symmetry / SymmetricConformation.hh
SmoothEnvPairPotential.cc	symmetry / SymmetryInfo.fwd.hh
SmoothEnvPairPotential.cc	symmetry / SymmetryInfo.hh
SmoothEnvPairPotential.hh	Residue.fwd.hh
SplitUnfoldedTwoBodyPotential.cc	Residue.hh
SS_Info.cc	Residue.hh
solid_surface / SurfaceEnergies.cc	find_neighbors.hh
solid_surface / SurfaceEnergies.cc	PointGraph.hh
solid_surface / SurfaceEnergies.hh	find_neighbors.fwd.hh
sym_e / symE.cc	Residue.hh
symmetry / SymmetricEnergies.cc	Conformation.hh
symmetry / SymmetricEnergies.cc	find_neighbors.hh
symmetry / SymmetricEnergies.cc	PointGraph.hh
symmetry / SymmetricEnergies.cc	PointGraphData.hh
symmetry / SymmetricEnergies.cc	symmetry / SymmetricConformation.hh
symmetry / SymmetricEnergies.cc	symmetry / SymmetryInfo.hh
symmetry / SymmetricEnergies.hh	PointGraph.fwd.hh
symmetry / SymmetricEnergies.hh	symmetry / SymmetricConformation.fwd.hh
symmetry / SymmetricEnergies.hh	symmetry / SymmetryInfo.fwd.hh
symmetry / SymmetricScoreFunction.hh	symmetry / SymmetricConformation.fwd.hh
symmetry / SymmetricScoreFunction.hh	symmetry / SymmetryInfo.fwd.hh
TMscore.hh	Residue.fwd.hh
rna / TNA_SuitePotential.cc	Residue.hh
rna / TNA_SuitePotential.hh	Residue.fwd.hh
trie / trie.functions.fwd.hh	Residue.fwd.hh
trie / trie.functions.fwd.hh	RotamerSetBase.fwd.hh
trie / trie.functions.hh	Residue.hh
trie / trie.functions.hh	RotamerSetBase.hh
etable / etrie / TrieCountPairGeneric.cc	PseudoBond.hh
etable / etrie / TrieCountPairGeneric.cc	Residue.hh
methods / TwoBodyEnergy.cc	Residue.hh
methods / TwoBodyEnergy.cc	RotamerSetBase.hh
methods / TwoBodyEnergy.hh	Residue.fwd.hh
methods / TwoBodyEnergy.hh	RotamerSetBase.fwd.hh
UnfoldedStatePotential.cc	Residue.hh
carbohydrates / util.cc	carbohydrates / GlycanTreeSet.hh
util.cc	Residue.hh
sasa / util.cc	Residue.hh
rna / util.cc	Residue.hh
nmr / util.cc	Residue.hh
motif / util.cc	Residue.hh
methods / util.cc	Residue.hh
magnesium / util.cc	Residue.hh
loop_graph / util.cc	Residue.hh
fiber_diffraction / util.cc	Residue.hh
electron_density / util.cc	Residue.hh
cryst / util.cc	Residue.hh
constraints / util.cc	Residue.hh
carbohydrates / util.cc	Residue.hh
motif / util.cc	ResidueFactory.hh
fiber_diffraction / util.cc	ResidueFactory.hh
nmr / util.cc	symmetry / SymmetricConformation.hh
fiber_diffraction / util.cc	symmetry / SymmetricConformation.hh
electron_density / util.cc	symmetry / SymmetricConformation.hh
nmr / util.cc	symmetry / SymmetryInfo.hh
motif / util.cc	symmetry / SymmetryInfo.hh
fiber_diffraction / util.cc	symmetry / SymmetryInfo.hh
electron_density / util.cc	symmetry / SymmetryInfo.hh
motif / util.cc	symmetry / util.hh
carbohydrates / util.cc	carbohydrates / util.hh
carbohydrates / util.cc	util.hh
util.hh	Residue.fwd.hh
sasa / util.hh	Residue.fwd.hh
nmr / util.hh	Residue.fwd.hh
methods / util.hh	Residue.fwd.hh
magnesium / util.hh	Residue.fwd.hh
electron_density / util.hh	symmetry / SymmetryInfo.fwd.hh
vdwaals / VDW_Energy.cc	Residue.hh
VdWTinkerPotential.cc	Residue.hh
VdWTinkerPotential.cc	ResidueFactory.hh
VdWTinkerPotential.cc	RotamerSetBase.hh
VdWTinkerPotential.cc	RotamerSetCacheableDataType.hh
VdWTinkerPotential.hh	Residue.hh
VdWTinkerPotential.hh	RotamerSetBase.fwd.hh
vdwaals / VDWTrie.cc	Residue.hh
vdwaals / VDWTrie.hh	Residue.hh
WaterAdductHBondPotential.cc	Residue.hh
WaterAdductHBondPotential.hh	Residue.fwd.hh
motif / xfrags.cc	Residue.hh
motif / xfrags.cc	ResidueFactory.hh
motif / xfrags.cc	symmetry / SymmetryInfo.hh
motif / xfrags.cc	symmetry / util.hh
func / XYZ_Func.cc	Conformation.hh
func / XYZ_Func.cc	Residue.hh
func / XYZ_Func.hh	Conformation.fwd.hh
func / XYZ_Func.hh	Residue.fwd.hh