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scoring → id Relation

File in src/core/scoringIncludes file in src/core/id
constraints / AmbiguousConstraint.hhAtomID.hh
constraints / AmbiguousConstraint.hhSequenceMapping.fwd.hh
constraints / AmbiguousNMRConstraint.hhAtomID.hh
constraints / AmbiguousNMRDistanceConstraint.ccAtomID.hh
constraints / AmbiguousNMRDistanceConstraint.ccNamedAtomID.hh
constraints / AmbiguousNMRDistanceConstraint.ccSequenceMapping.hh
constraints / AmbiguousNMRDistanceConstraint.hhAtomID.hh
constraints / AmbiguousNMRDistanceConstraint.hhNamedAtomID.hh
constraints / AngleConstraint.ccAtomID.hh
constraints / AngleConstraint.ccNamedAtomID.hh
constraints / AngleConstraint.ccSequenceMapping.hh
constraints / AngleConstraint.hhAtomID.fwd.hh
constraints / AngleConstraint.hhAtomID.hh
APBSWrapper.hhAtomID_Map.hh
constraints / AtomPairConstraint.ccAtomID.hh
constraints / AtomPairConstraint.ccNamedAtomID.hh
constraints / AtomPairConstraint.ccSequenceMapping.hh
constraints / AtomPairConstraint.hhAtomID.hh
constraints / AtomToAxisConstraint.ccAtomID.hh
constraints / AtomToAxisConstraint.ccNamedAtomID.hh
constraints / AtomToAxisConstraint.ccSequenceMapping.hh
constraints / AtomToAxisConstraint.hhAtomID.hh
constraints / BackboneStubConstraint.ccSequenceMapping.hh
constraints / BackboneStubLinearConstraint.ccSequenceMapping.hh
constraints / BasePairConstraint.ccSequenceMapping.hh
constraints / BasePairConstraint.hhAtomID.hh
constraints / BasePairConstraint.hhSequenceMapping.fwd.hh
constraints / BigBinConstraint.hhAtomID.hh
carbohydrates / CHIEnergyFunction.hhtypes.hh
packing / compute_holes_score_res.hhAtomID_Map.hh
packstat / compute_sasa.hhAtomID_Map.fwd.hh
constraints / ConstantConstraint.ccAtomID.hh
constraints / ConstantConstraint.hhAtomID.fwd.hh
constraints / Constraint.ccAtomID.hh
constraints / Constraint.hhAtomID.fwd.hh
constraints / Constraint.hhSequenceMapping.fwd.hh
constraints / ConstraintIO.ccAtomID.hh
constraints / Constraints.hhAtomID.fwd.hh
constraints / ConstraintsEnergy.hhTorsionID.fwd.hh
constraints / ConstraintSet.ccSequenceMapping.hh
constraints / ConstraintSet.hhAtomID.fwd.hh
constraints / ConstraintSet.hhDOF_ID.fwd.hh
constraints / ConstraintSet.hhSequenceMapping.fwd.hh
methods / ContextDependentTwoBodyEnergy.hhDOF_ID.fwd.hh
methods / ContextDependentTwoBodyEnergy.hhTorsionID.fwd.hh
constraints / CoordinateConstraint.ccAtomID.hh
constraints / CoordinateConstraint.ccNamedAtomID.hh
constraints / CoordinateConstraint.ccSequenceMapping.hh
constraints / CoordinateConstraint.hhAtomID.hh
constraints / DihedralConstraint.ccNamedAtomID.hh
constraints / DihedralConstraint.ccSequenceMapping.hh
constraints / DihedralConstraint.hhAtomID.hh
constraints / DihedralPairConstraint.ccNamedAtomID.hh
constraints / DihedralPairConstraint.ccSequenceMapping.hh
constraints / DihedralPairConstraint.hhAtomID.hh
constraints / DistancePairConstraint.ccNamedAtomID.hh
constraints / DistancePairConstraint.ccSequenceMapping.hh
constraints / DistancePairConstraint.hhAtomID.hh
disulfides / DisulfideMatchingPotential.ccDOF_ID_Mask.fwd.hh
constraints / DOF_Constraint.hhDOF_ID.hh
dssp / Dssp.ccAtomID.hh
dssp / Dssp.ccNamedAtomID.hh
electron_density / ElectronDensity.ccAtomID.hh
electron_density_atomwise / ElectronDensityAtomwise.ccAtomID.hh
sc / ElectrostaticComplementarityCalculator.hhAtomID_Map.hh
sc / ElectrostaticSimilarityCalculator.hhAtomID_Map.hh
Energies.ccAtomID.hh
Energies.hhAtomID.fwd.hh
Energies.hhAtomID_Mask.fwd.hh
methods / EnergyMethod.hhAtomID.fwd.hh
constraints / FabConstraint.ccAtomID.hh
constraints / FabConstraint.hhSequenceMapping.fwd.hh
facts / FACTSPotential.ccAtomID.hh
facts / FACTSPotential.ccAtomID_Map.hh
facts / FACTSPotential.hhAtomID.fwd.hh
facts / FACTSResidue.ccAtomID.hh
facts / FACTSResidue.ccAtomID_Map.hh
func / FourPointsFunc.ccAtomID.hh
GenBornPotential.ccAtomID.hh
GenBornPotential.hhAtomID.fwd.hh
GenericBondedPotential.hhDOF_ID.fwd.hh
geometric_solvation / GeometricSolEnergyEvaluator.ccAtomID.hh
geometric_solvation / GeometricSolEnergyEvaluator.cctypes.hh
geometric_solvation / GeometricSolEnergyEvaluator.hhAtomID.fwd.hh
hbonds / HBondEnergy.cctypes.hh
hbonds / HBondSet.ccAtomID.hh
hbonds / HBondSet.hhAtomID.fwd.hh
packing / HolesEnergyRes.ccCacheableAtomID_MapVector.hh
constraints / KofNConstraint.ccAtomID.fwd.hh
constraints / KofNConstraint.ccAtomID.hh
constraints / KofNConstraint.ccSequenceMapping.fwd.hh
constraints / KofNConstraint.hhAtomID.hh
packstat / LeeRichards.hhAtomID.hh
packstat / LeeRichards.hhAtomID_Map.hh
sasa / LeGrandSasa.ccAtomID.hh
sasa / LeGrandSasa.ccAtomID_Map.hh
sasa / LeGrandSasa.hhAtomID_Map.fwd.hh
constraints / LocalCoordinateConstraint.ccAtomID.hh
constraints / LocalCoordinateConstraint.ccNamedStubID.hh
constraints / LocalCoordinateConstraint.ccSequenceMapping.hh
constraints / LocalCoordinateConstraint.hhAtomID.hh
loop_graph / evaluator / LoopClosePotentialEvaluator.hhAtomID.hh
loop_graph / LoopGraph.hhAtomID.hh
constraints / MembraneSpanConstraint.ccSequenceMapping.hh
constraints / MembraneSpanConstraint.hhAtomID.hh
constraints / MembraneSpanTermZConstraint.ccSequenceMapping.hh
constraints / MembraneSpanTermZConstraint.hhAtomID.hh
MinimizationGraph.hhDOF_ID.fwd.hh
MinimizationGraph.hhTorsionID.fwd.hh
methods / MMBondAngleEnergy.ccAtomID.hh
mm / MMBondAngleResidueTypeParamSet.hhAtomID.fwd.hh
methods / MMBondLengthEnergy.ccAtomID.hh
methods / MMTorsionEnergy.ccAtomID.hh
constraints / MultiConstraint.ccSequenceMapping.hh
constraints / MultiConstraint.hhAtomID.hh
MultipoleElecPotential.ccAtomID.hh
MultipoleElecPotential.hhAtomID.hh
constraints / NamedAngleConstraint.ccAtomID.hh
constraints / NamedAngleConstraint.ccExceptions.hh
constraints / NamedAngleConstraint.ccNamedAtomID.hh
constraints / NamedAngleConstraint.ccSequenceMapping.hh
constraints / NamedAngleConstraint.cctypes.hh
constraints / NamedAngleConstraint.hhAtomID.hh
constraints / NamedAngleConstraint.hhNamedAtomID.hh
constraints / NamedAtomPairConstraint.ccAtomID.hh
constraints / NamedAtomPairConstraint.ccExceptions.hh
constraints / NamedAtomPairConstraint.ccNamedAtomID.hh
constraints / NamedAtomPairConstraint.ccSequenceMapping.hh
constraints / NamedAtomPairConstraint.cctypes.hh
constraints / NamedAtomPairConstraint.hhAtomID.hh
constraints / NamedAtomPairConstraint.hhNamedAtomID.hh
constraints / NamedDihedralConstraint.ccAtomID.hh
constraints / NamedDihedralConstraint.ccExceptions.hh
constraints / NamedDihedralConstraint.ccNamedAtomID.hh
constraints / NamedDihedralConstraint.ccSequenceMapping.hh
constraints / NamedDihedralConstraint.cctypes.hh
constraints / NamedDihedralConstraint.hhAtomID.hh
constraints / NamedDihedralConstraint.hhNamedAtomID.hh
NeighborList.hhAtomID.hh
nmer / NMerPSSMEnergy.hhDOF_ID.fwd.hh
nmer / NMerPSSMEnergy.hhTorsionID.fwd.hh
nmer / NMerRefEnergy.hhDOF_ID.fwd.hh
nmer / NMerRefEnergy.hhTorsionID.fwd.hh
nmer / NMerSVMEnergy.hhDOF_ID.fwd.hh
nmer / NMerSVMEnergy.hhTorsionID.fwd.hh
nmr / NMRGridSearch.hhAtomID.hh
constraints / NonResidueTypeConstraint.ccSequenceMapping.hh
constraints / NonResidueTypeConstraint.hhAtomID.hh
hbonds / NPDHBondSet.ccAtomID.hh
hbonds / NPDHBondSet.hhAtomID.fwd.hh
hbonds / NPDHBondSet.hhAtomID_Map.hh
carbohydrates / OmegaPreferencesFunction.hhtypes.hh
OmegaTether.cctypes.hh
methods / OneBodyEnergy.ccPartialAtomID.hh
methods / OneBodyEnergy.hhDOF_ID.fwd.hh
methods / OneBodyEnergy.hhPartialAtomID.fwd.hh
methods / OneBodyEnergy.hhTorsionID.fwd.hh
orbitals / OrbitalsScore.ccAtomID.hh
orbitals / OrbitalsScore.cctypes.hh
orbitals / OrbitalsScore.hhAtomID.fwd.hh
P_AA.ccTorsionID.hh
P_AA.hhTorsionID.fwd.hh
P_AA_ABEGO3.hhTorsionID.fwd.hh
P_AA_ss.hhTorsionID.fwd.hh
nmr / pcs / PCSData.ccAtomID.hh
nmr / pcs / PCSData.ccNamedAtomID.hh
nmr / pcs / PCSMultiSet.ccAtomID.hh
nmr / pcs / PCSSingle.ccAtomID.hh
nmr / pcs / PCSSingle.hhAtomID.fwd.hh
nmr / pcs / PCSSingleSet.ccAtomID.hh
PoissonBoltzmannPotential.hhAtomID_Map.hh
packing / PoseBalls.hhAtomID.hh
packing / PoseBalls.hhAtomID_Map.hh
packing / PoseBalls.hhAtomID_Mask.fwd.hh
packing / PoseBallsLite.hhAtomID.hh
packing / PoseBallsLite.hhAtomID_Map.hh
packing / PoseBallsLite.hhAtomID_Mask.fwd.hh
nmr / pre / PREData.ccAtomID.hh
nmr / pre / PREData.ccNamedAtomID.hh
nmr / pre / PREMultiSet.ccAtomID.hh
nmr / pre / PRESingle.ccAtomID.hh
nmr / pre / PRESingle.hhAtomID.fwd.hh
nmr / pre / PRESingleSet.ccAtomID.hh
RamaPrePro.ccPartialAtomID.hh
RamaPrePro.hhPartialAtomID.fwd.hh
nmr / rdc / RDCData.ccAtomID.hh
nmr / rdc / RDCMultiSet.ccAtomID.hh
nmr / rdc / RDCSingle.ccAtomID.hh
nmr / rdc / RDCSingle.hhAtomID.fwd.hh
nmr / rdc / RDCSingleSet.ccAtomID.hh
constraints / ResidueCouplingConstraint.hhAtomID.hh
constraints / ResidueTypeConstraint.ccSequenceMapping.hh
constraints / ResidueTypeConstraint.hhAtomID.hh
constraints / ResidueTypeLinkingConstraint.hhAtomID.hh
rms_util.ccAtomID.hh
rms_util.ccAtomID_Map.hh
rms_util.cctypes.hh
rms_util.hhAtomID.fwd.hh
rms_util.hhAtomID_Map.fwd.hh
rms_util.tmpl.hhSequenceMapping.hh
rna / chemical_shift / RNA_ChemicalShiftPotential.ccAtomID.hh
rna / chemical_shift / RNA_CS_MagneticAnisotropy.hhAtomID.fwd.hh
rna / chemical_shift / RNA_CS_Parameters.hhAtomID.fwd.hh
rna / chemical_shift / RNA_CS_RingCurrent.hhAtomID.fwd.hh
rna / chemical_shift / RNA_CS_Util.hhAtomID.fwd.hh
rna / RNA_LowResolutionPotential.ccAtomID.hh
rna / RNA_LowResolutionPotential.hhAtomID.fwd.hh
rna / RNA_SuitePotential.ccTorsionID.hh
rna / RNA_SuitePotential.hhTorsionID.hh
rna / RNA_TorsionPotential.ccDOF_ID_Mask.fwd.hh
rna / RNA_TorsionPotential.ccTorsionID.hh
rna / RNA_TorsionPotential.hhAtomID.fwd.hh
rna / RNA_TorsionPotential.hhTorsionID.fwd.hh
rna / RNP_LowResPairDistPotential.ccAtomID.hh
rna / RNP_LowResPotential.ccAtomID.hh
rna / RNP_LowResStackData.ccAtomID.hh
constraints / RTConstraint.ccNamedAtomID.hh
constraints / RTConstraint.ccNamedStubID.hh
constraints / RTConstraint.ccSequenceMapping.hh
constraints / RTConstraint.hhAtomID.hh
constraints / RTConstraint.hhNamedAtomID.fwd.hh
constraints / RTConstraint.hhNamedStubID.fwd.hh
sasa.ccAtomID.hh
sasa.ccAtomID_Map.hh
sasa.hhAtomID_Map.fwd.hh
sasa / SasaMethod.hhAtomID_Map.hh
SASAPotential.ccAtomID.hh
SASAPotential.hhAtomID.hh
ScoreFunction.ccDOF_ID.hh
ScoreFunction.ccTorsionID.hh
ScoreFunction.hhAtomID.fwd.hh
ScoreFunction.hhDOF_ID.fwd.hh
ScoreFunction.hhTorsionID.fwd.hh
aa_composition_energy / SequenceConstraint.hhAtomID.hh
constraints / SequenceProfileConstraint.ccSequenceMapping.hh
constraints / SequenceProfileConstraint.hhAtomID.hh
constraints / SequenceProfileConstraint.hhSequenceMapping.fwd.hh
constraints / SiteConstraint.ccAtomID.hh
constraints / SiteConstraint.hhSequenceMapping.fwd.hh
constraints / SiteConstraintResidues.ccAtomID.hh
constraints / SiteConstraintResidues.hhSequenceMapping.fwd.hh
loop_graph / evaluator / SixDTransRotPotentialEvaluator.ccAtomID.hh
loop_graph / evaluator / SixDTransRotPotentialEvaluator.hhAtomID.hh
packing / surf_vol.hhAtomID_Map.hh
packing / surf_vol.hhAtomID_Mask.fwd.hh
symmetry / SymmetricEnergies.ccAtomID.hh
rna / TNA_SuitePotential.hhTorsionID.hh
methods / TwoBodyEnergy.ccPartialAtomID.hh
methods / TwoBodyEnergy.hhAtomID.fwd.hh
methods / TwoBodyEnergy.hhDOF_ID.fwd.hh
methods / TwoBodyEnergy.hhPartialAtomID.fwd.hh
methods / TwoBodyEnergy.hhTorsionID.fwd.hh
packstat / types.hhAtomID.hh
sasa / util.ccAtomID.hh
nmr / util.ccAtomID.hh
methods / util.ccAtomID.hh
loop_graph / util.ccAtomID.hh
fiber_diffraction / util.ccAtomID.hh
dssp / util.ccAtomID.hh
sasa / util.ccAtomID_Map.hh
nmr / util.ccExceptions.hh
nmr / util.ccNamedAtomID.hh
fiber_diffraction / util.ccNamedAtomID.hh
constraints / util.ccSequenceMapping.hh
carbohydrates / util.cctypes.hh
methods / util.hhAtomID.fwd.hh
loop_graph / util.hhAtomID.fwd.hh
nmr / util.hhAtomID.hh
sasa / util.hhAtomID_Map.fwd.hh
atomic_depth / util.hhAtomID_Map.hh
nmr / util.hhNamedAtomID.hh
carbohydrates / util.hhtypes.hh
vdwaals / VDW_Energy.ccAtomID.hh
VdWTinkerPotential.ccAtomID.hh
VdWTinkerPotential.hhAtomID.hh
func / XYZ_Func.ccAtomID.hh
func / XYZ_Func.hhAtomID.fwd.hh
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