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pack → chemical Relation

File in src/core/packIncludes file in src/core/chemical
scmin / AtomTreeCollection.hhResidueType.fwd.hh
rotamer_set / bb_independent_rotamers.hhResidueType.fwd.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.ccAtomType.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.ccResidueType.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.hhResidueProperty.hh
scmin / CartSCMinMultifunc.ccResidueType.hh
dunbrack / cenrot / CenRotDunEnergy.ccVariantType.hh
dunbrack / cenrot / CenrotLibrary.ccChemicalManager.hh
dunbrack / cenrot / CenrotLibrary.ccResidueTypeSet.hh
dunbrack / cenrot / CenrotLibrary.hhAA.hh
dunbrack / cenrot / CenrotLibrary.hhResidueType.fwd.hh
task / residue_selector / ClashBasedShellSelector.ccAtomType.hh
rotamer_set / ContinuousRotamerSet.ccrotamers / NCAARotamerLibrarySpecification.hh
rotamer_set / ContinuousRotamerSet.ccResidueType.hh
rotamer_set / ContinuousRotamerSet.hhAA.hh
rotamer_set / ContinuousRotamerSet.hhResidueType.fwd.hh
palette / DefaultPackerPalette.hhResidueTypeSet.fwd.hh
task / operation / DesignRestrictions.ccAA.hh
dunbrack / DunbrackEnergy.ccrotamers / NCAARotamerLibrarySpecification.hh
dunbrack / DunbrackEnergy.ccVariantType.hh
dunbrack / DunbrackRotamer.ccResidueType.hh
dunbrack / DunbrackRotamer.hhResidueType.fwd.hh
annealer / FixbbSimAnnealer.ccResidueType.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.ccAtomType.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.ccResidueType.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.hhResidueProperty.hh
hbonds / HBondGraph_util.ccAtomType.hh
interaction_graph / HPatchInteractionGraph.hhAtomType.hh
interaction_graph / HPatchInteractionGraph.hhAtomTypeSet.hh
interaction_graph / HPatchInteractionGraph.hhResidueType.hh
interaction_graph / InteractionGraphFactory.ccChemicalManager.fwd.hh
interaction_graph / InteractionGraphFactory.ccResidueTypeSet.hh
make_symmetric_task.ccAA.hh
palette / NCAADefaultPackerPalette.hhResidueTypeSet.fwd.hh
palette / NoDesignPackerPalette.hhResidueTypeSet.fwd.hh
task / operation / NoRepackDisulfides.ccAA.hh
task / operation / NoRepackDisulfides.ccVariantType.hh
interaction_graph / NPDHBondInteractionGraph.ccAtomType.hh
interaction_graph / NPDHBondInteractionGraph.ccAtomTypeSet.hh
interaction_graph / NPDHBondInteractionGraph.ccResidueType.hh
task / operation / OptCysHG.ccAA.hh
task / operation / OptCysHG.ccVariantType.hh
pack_missing_sidechains.ccAtomType.hh
pack_missing_sidechains.ccResidueType.hh
palette / PackerPalette.cccarbohydrates / CarbohydrateInfo.hh
palette / PackerPalette.ccResidueType.hh
palette / PackerPalette.ccResidueTypeFinder.hh
palette / PackerPalette.ccResidueTypeSet.hh
palette / PackerPalette.ccutil.hh
palette / PackerPalette.hhResidueProperty.hh
palette / PackerPalette.hhResidueType.fwd.hh
palette / PackerPalette.hhResidueTypeSet.fwd.hh
palette / PackerPalette.hhVariantType.hh
task / PackerTask.hhAA.hh
task / PackerTask.hhResidueType.fwd.hh
task / PackerTask.hhResidueTypeSet.fwd.hh
task / PackerTask_.ccAA.hh
task / PackerTask_.ccChemicalManager.hh
task / PackerTask_.ccResidueType.hh
task / PackerTask_.ccResidueTypeSet.hh
task / PackerTask_.ccutil.hh
task / PackerTask_.ccVariantType.hh
dunbrack / PeptoidDOFReporters.ccResidueConnection.hh
dunbrack / PeptoidDOFReporters.ccVariantType.hh
task / ResfileReader.ccResidueProperties.hh
task / ResfileReader.ccResidueType.hh
task / ResfileReader.ccResidueTypeSet.hh
task / ResfileReader.cctypes.hh
task / ResfileReader.hhAA.hh
task / ResfileReader.hhResidueProperty.hh
task / operation / ResFilters.ccResidueType.hh
task / ResidueLevelTask.hhAA.hh
task / ResidueLevelTask.hhResidueProperty.hh
task / ResidueLevelTask.hhResidueType.fwd.hh
task / ResidueLevelTask.hhResidueTypeSet.fwd.hh
task / ResidueLevelTask_.ccAA.hh
task / ResidueLevelTask_.ccResidueType.hh
task / ResidueLevelTask_.ccResidueTypeFinder.hh
task / ResidueLevelTask_.ccResidueTypeSet.hh
task / ResidueLevelTask_.ccutil.hh
task / ResidueLevelTask_.ccVariantType.hh
task / ResidueLevelTask_.hhResidueProperty.hh
task / operation / ResLvlTaskOperations.ccAA.hh
rotamer_set / rna_rotamer_building_functions.ccAtomType.hh
rotamer_set / rna_rotamer_building_functions.ccResidueType.hh
rotamer_set / rna_rotamer_building_functions.ccResidueTypeSet.hh
rotamer_set / rna_rotamer_building_functions.ccrna / RNA_FittedTorsionInfo.hh
rotamer_set / rna_rotamer_building_functions.ccrna / RNA_Info.hh
rotamer_set / rna_rotamer_building_functions.ccrna / RNA_SamplerUtil.hh
rotamer_set / rna_rotamer_building_functions.ccrna / util.hh
rotamer_set / rna_rotamer_building_functions.hhResidueType.fwd.hh
rotamer_set / rotamer_building_functions.ccAtomType.hh
rotamer_set / rotamer_building_functions.ccResidueTypeSet.hh
rotamer_set / rotamer_building_functions.hhResidueType.fwd.hh
dunbrack / RotamerConstraint.ccResidueType.hh
dunbrack / RotamerConstraint.hhResidueType.fwd.hh
interaction_graph / RotamerDots.ccAtomType.hh
interaction_graph / RotamerDots.ccAtomTypeSet.hh
interaction_graph / RotamerDots.ccChemicalManager.hh
dunbrack / RotamericSingleResidueDunbrackLibrary.hhResidueType.fwd.hh
dunbrack / RotamericSingleResidueDunbrackLibrary.tmpl.hhrotamers / NCAARotamerLibrarySpecification.hh
dunbrack / RotamericSingleResidueDunbrackLibrary.tmpl.hhrings / RingConformer.hh
dunbrack / RotamericSingleResidueDunbrackLibrary.tmpl.hhrings / RingConformerSet.hh
dunbrack / RotamericSingleResidueDunbrackLibraryParser.ccMutableResidueType.hh
dunbrack / RotamericSingleResidueDunbrackLibraryParser.ccResidueType.hh
dunbrack / RotamericSingleResidueDunbrackLibraryParser.hhAA.hh
dunbrack / RotamericSingleResidueDunbrackLibraryParser.tmpl.hhAA.hh
dunbrack / RotamerLibrary.ccAA.hh
dunbrack / RotamerLibrary.ccChemicalManager.hh
dunbrack / RotamerLibrary.ccResidueTypeSet.hh
dunbrack / RotamerLibrary.ccrotamers / RotamerLibrarySpecification.hh
dunbrack / RotamerLibrary.hhAA.hh
dunbrack / RotamerLibrary.hhResidueType.fwd.hh
rotamer_set / RotamerSet_.ccResidueTypeSet.hh
rotamer_set / RotamerSet_.hhResidueType.fwd.hh
rotamer_set / RotamerSets.ccAA.hh
rotamer_set / RotamerSets.ccResidueTypeSet.hh
rotamer_set / RotamerSets.ccVariantType.hh
rotamer_set / RotamerSubset.hhResidueType.fwd.hh
guidance_scoreterms / sap / SapConstraintEnergy.ccResidueType.hh
guidance_scoreterms / sap / SapConstraintEnergy.hhResidueProperty.hh
guidance_scoreterms / sap / SapConstraintOptions.ccResidueType.hh
guidance_scoreterms / sap / SapConstraintOptions.hhResidueProperties.hh
guidance_scoreterms / sap / SapConstraintOptions.hhResidueProperty.hh
guidance_scoreterms / sap / SapConstraintOptions.hhResidueType.fwd.hh
guidance_scoreterms / sap / SapConstraintOptions.hhResidueType.hh
guidance_scoreterms / sap / SapDatabase.ccResidueType.hh
dunbrack / SemiRotamericSingleResidueDunbrackLibrary.tmpl.hhAA.hh
dunbrack / SemiRotamericSingleResidueDunbrackLibrary.tmpl.hhResidueType.fwd.hh
scmin / SidechainStateAssignment.ccResidueType.hh
rotamers / SingleBasicRotamerLibrary.ccrotamers / BasicRotamerLibrarySpecification.hh
rotamers / SingleBasicRotamerLibrary.ccResidueType.hh
rotamers / SingleBasicRotamerLibraryCreator.hhResidueType.fwd.hh
rotamers / SingleLigandRotamerLibrary.ccResidueTypeSet.hh
rotamers / SingleLigandRotamerLibraryCreator.ccrotamers / PDBRotamerLibrarySpecification.hh
rotamers / SingleLigandRotamerLibraryCreator.ccResidueType.hh
rotamers / SingleLigandRotamerLibraryCreator.ccrotamers / RotamerLibrarySpecification.hh
rotamers / SingleLigandRotamerLibraryCreator.hhResidueType.fwd.hh
rotamers / SingleNCAARotamerLibraryCreator.ccAA.hh
rotamers / SingleNCAARotamerLibraryCreator.ccrotamers / NCAARotamerLibrarySpecification.hh
rotamers / SingleNCAARotamerLibraryCreator.ccResidueType.hh
rotamers / SingleNCAARotamerLibraryCreator.ccrotamers / RotamerLibrarySpecification.hh
rotamers / SingleNCAARotamerLibraryCreator.hhResidueType.fwd.hh
dunbrack / cenrot / SingleResidueCenrotLibrary.ccAA.hh
dunbrack / cenrot / SingleResidueCenrotLibrary.ccResidueType.hh
dunbrack / cenrot / SingleResidueCenrotLibraryCreator.ccAA.hh
dunbrack / cenrot / SingleResidueCenrotLibraryCreator.ccrotamers / CenrotRotamerLibrarySpecification.hh
dunbrack / cenrot / SingleResidueCenrotLibraryCreator.ccResidueType.hh
dunbrack / cenrot / SingleResidueCenrotLibraryCreator.ccrotamers / RotamerLibrarySpecification.hh
dunbrack / cenrot / SingleResidueCenrotLibraryCreator.hhResidueType.fwd.hh
dunbrack / SingleResidueDunbrackLibrary.ccMutableResidueType.hh
dunbrack / SingleResidueDunbrackLibrary.hhAA.hh
dunbrack / SingleResidueDunbrackLibraryCreator.ccAA.hh
dunbrack / SingleResidueDunbrackLibraryCreator.ccrotamers / DunbrackRotamerLibrarySpecification.hh
dunbrack / SingleResidueDunbrackLibraryCreator.ccResidueType.hh
dunbrack / SingleResidueDunbrackLibraryCreator.ccrotamers / RotamerLibrarySpecification.hh
dunbrack / SingleResidueDunbrackLibraryCreator.hhResidueType.fwd.hh
rotamers / SingleResidueRotamerLibrary.hhResidueType.fwd.hh
rotamers / SingleResidueRotamerLibraryCreator.ccResidueType.hh
rotamers / SingleResidueRotamerLibraryCreator.hhResidueType.fwd.hh
rotamers / SingleResidueRotamerLibraryFactory.ccrotamers / BasicRotamerLibrarySpecification.hh
rotamers / SingleResidueRotamerLibraryFactory.ccResidueType.hh
rotamers / SingleResidueRotamerLibraryFactory.ccResidueTypeSet.hh
rotamers / SingleResidueRotamerLibraryFactory.ccrotamers / RotamerLibrarySpecification.hh
rotamers / SingleResidueRotamerLibraryFactory.hhResidueType.fwd.hh
annealer / SmartFixbbSimAnnealer.ccResidueType.hh
dunbrack / StandardDOFReporters.ccrotamers / NCAARotamerLibrarySpecification.hh
rotamers / StoredRotamerLibraryCreator.ccResidueType.hh
rotamers / StoredRotamerLibraryCreator.ccrotamers / RotamerLibrarySpecification.hh
rotamers / StoredRotamerLibraryCreator.ccrotamers / StoredRotamerLibrarySpecification.hh
rotamers / StoredRotamerLibraryCreator.hhResidueType.fwd.hh
interaction_graph / SurfacePotential.ccAtomType.hh
interaction_graph / SurfacePotential.hhAA.hh
rotamer_set / symmetry / SymmetricRotamerSet_.hhResidueType.fwd.hh
rotamer_set / symmetry / SymmetricRotamerSets.ccAA.hh
task / operation / TaskOperations.ccResidueProperties.hh
task / operation / TaskOperations.hhResidueProperty.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.ccResidueType.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.hhResidueProperty.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyVoxelGrid.ccChemicalManager.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyVoxelGrid.ccGlobalResidueTypeSet.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyVoxelGrid.ccResidueType.hh
rotamer_set / water_rotamer_building_functions.ccAtomType.hh
rotamer_set / water_rotamer_building_functions.ccChemicalManager.hh
rotamer_set / water_rotamer_building_functions.ccResidueTypeSet.hh
rotamer_set / water_rotamer_building_functions.cctypes.hh
rotamer_set / water_rotamer_building_functions.hhResidueType.fwd.hh
rotamer_set / WaterAnchorInfo.ccAA.hh
rotamer_set / WaterAnchorInfo.ccResidueType.hh
rotamer_set / WaterAnchorInfo.hhAA.hh
rotamer_set / WaterAnchorInfo.hhResidueType.fwd.hh
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