pack → conformation Relation

File in src/core/pack	Includes file in src/core/conformation
rotamer_set / AddResiduesRotamerSetOperation.cc	Residue.hh
rotamer_set / AddResiduesRotamerSetOperation.hh	Residue.fwd.hh
guidance_scoreterms / approximate_buried_unsat_penalty / ApproximateBuriedUnsatPenalty.cc	Residue.hh
guidance_scoreterms / approximate_buried_unsat_penalty / ApproximateBuriedUnsatPenalty.cc	RotamerSetBase.hh
scmin / AtomTreeCollection.cc	Residue.hh
scmin / AtomTreeCollection.cc	util.hh
scmin / AtomTreeCollection.hh	Conformation.fwd.hh
scmin / AtomTreeCollection.hh	Residue.fwd.hh
scmin / AtomTreeSCMinMinimizerMap.cc	Residue.hh
scmin / AtomTreeSCMinMinimizerMap.hh	Residue.fwd.hh
rotamer_set / bb_independent_rotamers.cc	Residue.hh
rotamer_set / bb_independent_rotamers.hh	Residue.fwd.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.cc	Conformation.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.cc	Residue.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.cc	symmetry / SymmetricConformation.fwd.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.cc	symmetry / SymmetricConformation.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.cc	symmetry / SymmetryInfo.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.hh	Residue.fwd.hh
guidance_scoreterms / buried_unsat_penalty / graph / BuriedUnsatPenaltyGraph.cc	Conformation.hh
guidance_scoreterms / buried_unsat_penalty / graph / BuriedUnsatPenaltyGraph.cc	symmetry / MirrorSymmetricConformation.hh
guidance_scoreterms / buried_unsat_penalty / graph / BuriedUnsatPenaltyGraph.cc	Residue.hh
guidance_scoreterms / buried_unsat_penalty / graph / BuriedUnsatPenaltyGraph.cc	symmetry / SymmetricConformation.hh
guidance_scoreterms / buried_unsat_penalty / graph / BuriedUnsatPenaltyGraph.cc	symmetry / SymmetryInfo.hh
guidance_scoreterms / buried_unsat_penalty / graph / BuriedUnsatPenaltyGraph.hh	Residue.fwd.hh
guidance_scoreterms / buried_unsat_penalty / graph / BuriedUnsatPenaltyGraph.hh	symmetry / SymmetryInfo.fwd.hh
scmin / CartSCMinMinimizerMap.cc	Residue.hh
scmin / CartSCMinMinimizerMap.hh	Residue.fwd.hh
scmin / CartSCMinMultifunc.cc	Residue.hh
scmin / CartSCMinMultifunc.hh	Residue.fwd.hh
dunbrack / cenrot / CenRotDunEnergy.cc	Residue.hh
dunbrack / cenrot / CenrotLibrary.hh	Residue.fwd.hh
task / residue_selector / ClashBasedShellSelector.cc	Conformation.hh
task / residue_selector / ClashBasedShellSelector.cc	find_neighbors.hh
task / residue_selector / ClashBasedShellSelector.cc	PointGraph.hh
task / residue_selector / ClashBasedShellSelector.cc	Residue.hh
task / residue_selector / ClashBasedShellSelector.hh	Residue.fwd.hh
rotamer_set / ContinuousRotamerSet.cc	Residue.hh
dunbrack / DunbrackConstraint.hh	Conformation.fwd.hh
dunbrack / DunbrackConstraint.hh	Residue.fwd.hh
dunbrack / DunbrackEnergy.cc	Residue.hh
annealer / FixbbCoupledRotamerSimAnnealer.cc	Residue.hh
annealer / FixbbCoupledRotamerSimAnnealer.cc	ResidueMatcher.hh
annealer / FixbbLinkingRotamerSimAnnealer.cc	Residue.hh
annealer / FixbbLinkingRotamerSimAnnealer.cc	ResidueMatcher.hh
annealer / FixbbPwatSimAnnealer.cc	Residue.hh
rotamer_set / FixbbRotamerSets.hh	Residue.fwd.hh
annealer / FixbbSimAnnealer.cc	Residue.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.cc	Conformation.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.cc	Residue.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.cc	symmetry / SymmetricConformation.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.cc	symmetry / SymmetryInfo.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.cc	symmetry / util.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.hh	Residue.fwd.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.hh	symmetry / SymmetryInfo.fwd.hh
hbonds / HBondGraph_util.cc	Conformation.hh
hbonds / HBondGraph_util.cc	Residue.hh
hbonds / HBondGraph_util.cc	symmetry / SymmetricConformation.hh
hbonds / HBondGraph_util.cc	symmetry / SymmetryInfo.hh
hbonds / HBondGraph_util.hh	Residue.fwd.hh
hbonds / HBondGraph_util.hh	symmetry / SymmetryInfo.fwd.hh
hbonds / HBondGraphInitializerIG.cc	Conformation.hh
hbonds / HBondGraphInitializerIG.cc	symmetry / SymmetryInfo.hh
hbonds / HBondGraphInitializerIG.hh	symmetry / SymmetryInfo.fwd.hh
interaction_graph / HPatchEnergy.hh	Residue.fwd.hh
interaction_graph / HPatchInteractionGraph.hh	Residue.hh
interaction_graph / InteractionGraphFactory.cc	Residue.hh
interaction_graph / LinearMemoryInteractionGraph.cc	Residue.hh
make_symmetric_task.cc	symmetry / SymmetricConformation.hh
make_symmetric_task.cc	symmetry / SymmetryInfo.hh
min_pack.cc	Residue.hh
task / operation / NoRepackDisulfides.cc	Residue.hh
task / operation / NoRepackDisulfides.cc	symmetry / SymmetryInfo.hh
interaction_graph / NPDHBondInteractionGraph.cc	Residue.hh
interaction_graph / NPDHBondInteractionGraph.hh	Residue.hh
interaction_graph / NPDHBSimpleInteractionGraph.cc	Residue.hh
interaction_graph / NPDHBSimpleInteractionGraph.hh	Residue.fwd.hh
interaction_graph / OnTheFlyInteractionGraph.cc	Residue.hh
interaction_graph / OnTheFlyInteractionGraph.hh	Residue.fwd.hh
task / operation / OptCysHG.cc	Residue.hh
optimizeH.cc	Residue.hh
pack_rotamers.cc	Residue.hh
pack_rotamers.cc	symmetry / SymmetryInfo.hh
pack_rotamers.hh	symmetry / SymmetricConformation.fwd.hh
pack_rotamers.hh	symmetry / SymmetryInfo.fwd.hh
packer_neighbors.cc	Conformation.hh
packer_neighbors.cc	find_neighbors.hh
packer_neighbors.cc	PointGraph.hh
packer_neighbors.cc	PointGraphData.hh
packer_neighbors.cc	Residue.hh
packer_neighbors.cc	symmetry / SymmetricConformation.hh
packer_neighbors.cc	symmetry / SymmetryInfo.hh
palette / PackerPalette.cc	Residue.hh
palette / PackerPalette.hh	Residue.fwd.hh
task / PackerTask.hh	Residue.fwd.hh
task / PackerTask_.cc	Residue.hh
dunbrack / PeptoidDOFReporters.cc	Conformation.hh
dunbrack / PeptoidDOFReporters.cc	Residue.functions.hh
dunbrack / PeptoidDOFReporters.cc	Residue.hh
dunbrack / PeptoidDOFReporters.hh	Residue.fwd.hh
interaction_graph / PrecomputedPairEnergiesInteractionGraph.cc	symmetry / SymmetryInfo.hh
interaction_graph / PrecomputedPairEnergiesInteractionGraph.hh	symmetry / SymmetryInfo.fwd.hh
task / operation / ResFilters.cc	Residue.hh
interaction_graph / ResidueArrayAnnealingEvaluator.cc	symmetry / MirrorSymmetricConformation.hh
interaction_graph / ResidueArrayAnnealingEvaluator.cc	Residue.hh
interaction_graph / ResidueArrayAnnealingEvaluator.cc	symmetry / SymmetricConformation.hh
interaction_graph / ResidueArrayAnnealingEvaluator.cc	symmetry / SymmetryInfo.hh
interaction_graph / ResidueArrayAnnealingEvaluator.hh	symmetry / MirrorSymmetricConformation.fwd.hh
interaction_graph / ResidueArrayAnnealingEvaluator.hh	symmetry / SymmetricConformation.fwd.hh
dunbrack / ResidueDOFReporter.hh	Residue.fwd.hh
task / ResidueLevelTask.hh	Residue.fwd.hh
task / ResidueLevelTask_.cc	Residue.hh
rotamer_set / rna_rotamer_building_functions.cc	Atom.hh
rotamer_set / rna_rotamer_building_functions.cc	Residue.hh
rotamer_set / rna_rotamer_building_functions.cc	ResidueFactory.hh
rotamer_set / rna_rotamer_building_functions.cc	ResidueMatcher.hh
rotamer_set / rna_rotamer_building_functions.hh	Residue.fwd.hh
rotamer_set / rotamer_building_functions.cc	Atom.hh
rotamer_set / rotamer_building_functions.cc	Residue.hh
rotamer_set / rotamer_building_functions.cc	ResidueFactory.hh
rotamer_set / rotamer_building_functions.cc	ResidueMatcher.hh
rotamer_set / rotamer_building_functions.hh	Residue.fwd.hh
rotamer_trials.cc	Residue.hh
rotamer_trials.cc	symmetry / SymmetricConformation.hh
rotamer_trials.cc	symmetry / SymmetryInfo.hh
dunbrack / RotamerConstraint.cc	Residue.hh
dunbrack / RotamerConstraint.hh	Conformation.fwd.hh
rotamer_set / RotamerCouplings.hh	ResidueMatcher.hh
interaction_graph / RotamerDots.cc	Atom.hh
interaction_graph / RotamerDots.cc	Residue.hh
interaction_graph / RotamerDots.hh	Atom.fwd.hh
interaction_graph / RotamerDots.hh	Residue.fwd.hh
dunbrack / RotamericSingleResidueDunbrackLibrary.hh	Residue.fwd.hh
dunbrack / RotamericSingleResidueDunbrackLibrary.tmpl.hh	Conformation.hh
dunbrack / RotamericSingleResidueDunbrackLibrary.tmpl.hh	Residue.hh
dunbrack / RotamericSingleResidueDunbrackLibrary.tmpl.hh	ResidueFactory.hh
dunbrack / RotamerLibrary.hh	Residue.fwd.hh
rotamer_set / RotamerSet.fwd.hh	Residue.fwd.hh
rotamer_set / RotamerSet.hh	Residue.fwd.hh
rotamer_set / RotamerSet.hh	RotamerSetBase.hh
rotamer_set / RotamerSet_.cc	AbstractRotamerTrie.hh
rotamer_set / RotamerSet_.cc	Atom.hh
rotamer_set / RotamerSet_.cc	Residue.functions.hh
rotamer_set / RotamerSet_.cc	Residue.hh
rotamer_set / RotamerSet_.cc	ResidueFactory.hh
rotamer_set / RotamerSet_.hh	Residue.fwd.hh
rotamer_set / RotamerSets.cc	Conformation.hh
rotamer_set / RotamerSets.cc	Residue.hh
rotamer_set / RotamerSets.cc	ResidueFactory.hh
rotamer_set / RotamerSets.cc	symmetry / SymmetryInfo.hh
rotamer_set / RotamerSets.hh	Residue.fwd.hh
rotamer_set / RotamerSubset.cc	AbstractRotamerTrie.hh
rotamer_set / RotamerSubset.cc	Atom.hh
rotamer_set / RotamerSubset.cc	Residue.hh
rotamer_set / RotamerSubset.hh	Residue.fwd.hh
rotamer_set / RotamerSubsets.cc	Residue.hh
rotamer_set / RotamerSubsets.hh	Residue.fwd.hh
rtmin.cc	Residue.hh
rtmin.hh	Residue.fwd.hh
guidance_scoreterms / sap / SapConstraint.cc	Conformation.hh
guidance_scoreterms / sap / SapConstraintEnergy.cc	Residue.hh
guidance_scoreterms / sap / SapConstraintEnergy.hh	Residue.fwd.hh
guidance_scoreterms / sap / SapConstraintHelper.cc	Conformation.hh
guidance_scoreterms / sap / SapConstraintHelper.cc	Residue.hh
guidance_scoreterms / sap / SapConstraintHelper.cc	symmetry / SymmetricConformation.hh
guidance_scoreterms / sap / SapConstraintHelper.cc	util.hh
guidance_scoreterms / sap / SapConstraintHelper.hh	Residue.hh
guidance_scoreterms / sap / SapConstraintHelper.hh	symmetry / SymmetryInfo.hh
guidance_scoreterms / sap / SapConstraintOptions.cc	Residue.hh
guidance_scoreterms / sap / SapConstraintOptions.hh	Residue.fwd.hh
guidance_scoreterms / sap / SapDatabase.hh	Residue.hh
guidance_scoreterms / sap / SapMathConstraint.cc	Conformation.hh
scmin / SCMinMinimizerMap.hh	Residue.fwd.hh
scmin / SCMinMultifunc.cc	Residue.hh
scmin / SCMinMultifunc.hh	Residue.fwd.hh
dunbrack / SemiRotamericSingleResidueDunbrackLibrary.hh	Residue.fwd.hh
dunbrack / SemiRotamericSingleResidueDunbrackLibrary.tmpl.hh	Residue.hh
annealer / SequenceSymmetricAnnealer.cc	Residue.hh
interaction_graph / SimpleInteractionGraph.cc	Residue.hh
interaction_graph / SimpleInteractionGraph.hh	Residue.fwd.hh
rotamers / SingleBasicRotamerLibrary.cc	Residue.hh
rotamers / SingleBasicRotamerLibrary.cc	ResidueFactory.hh
rotamers / SingleBasicRotamerLibrary.hh	Residue.hh
rotamers / SingleLigandRotamerLibrary.cc	Residue.functions.hh
rotamers / SingleLigandRotamerLibrary.cc	Residue.hh
rotamers / SingleLigandRotamerLibrary.cc	ResidueFactory.hh
rotamers / SingleLigandRotamerLibrary.hh	Residue.hh
dunbrack / cenrot / SingleResidueCenrotLibrary.cc	Residue.functions.hh
dunbrack / cenrot / SingleResidueCenrotLibrary.cc	Residue.hh
dunbrack / cenrot / SingleResidueCenrotLibrary.cc	ResidueFactory.hh
dunbrack / SingleResidueDunbrackLibrary.cc	Residue.hh
rotamers / SingleResidueRotamerLibrary.cc	Residue.hh
rotamers / SingleResidueRotamerLibrary.cc	ResidueFactory.hh
rotamers / SingleResidueRotamerLibrary.fwd.hh	Residue.fwd.hh
rotamers / SingleResidueRotamerLibrary.hh	Residue.fwd.hh
rotamers / SingleResidueRotamerLibraryCreator.hh	Residue.fwd.hh
rotamers / SingleResidueRotamerLibraryFactory.hh	Residue.fwd.hh
annealer / SmartFixbbSimAnnealer.cc	Residue.hh
dunbrack / StandardDOFReporters.cc	Residue.functions.hh
dunbrack / StandardDOFReporters.cc	Residue.hh
dunbrack / StandardDOFReporters.hh	Residue.fwd.hh
interaction_graph / SurfaceEnergy.hh	Residue.fwd.hh
interaction_graph / SurfaceInteractionGraph.hh	Residue.hh
interaction_graph / SurfacePotential.cc	find_neighbors.hh
interaction_graph / SurfacePotential.cc	PointGraph.hh
interaction_graph / SurfacePotential.cc	PointGraphData.hh
interaction_graph / SurfacePotential.cc	Residue.hh
interaction_graph / SurfacePotential.cc	symmetry / SymmetricConformation.hh
interaction_graph / SurfacePotential.cc	symmetry / SymmetryInfo.hh
interaction_graph / SurfacePotential.hh	Residue.fwd.hh
rotamer_set / symmetry / SymmetricRotamerSet_.cc	Atom.hh
rotamer_set / symmetry / SymmetricRotamerSet_.cc	symmetry / MirrorSymmetricConformation.hh
rotamer_set / symmetry / SymmetricRotamerSet_.cc	Residue.hh
rotamer_set / symmetry / SymmetricRotamerSet_.cc	symmetry / SymmetricConformation.hh
rotamer_set / symmetry / SymmetricRotamerSet_.cc	symmetry / SymmetryInfo.hh
rotamer_set / symmetry / SymmetricRotamerSet_.hh	Residue.fwd.hh
rotamer_set / symmetry / SymmetricRotamerSet_.hh	symmetry / SymmetricConformation.fwd.hh
rotamer_set / symmetry / SymmetricRotamerSet_.hh	symmetry / SymmetryInfo.fwd.hh
rotamer_set / symmetry / SymmetricRotamerSets.cc	symmetry / MirrorSymmetricConformation.hh
rotamer_set / symmetry / SymmetricRotamerSets.cc	Residue.hh
rotamer_set / symmetry / SymmetricRotamerSets.cc	symmetry / SymmetricConformation.hh
rotamer_set / symmetry / SymmetricRotamerSets.cc	symmetry / SymmetryInfo.hh
rotamer_set / symmetry / SymmetricRotamerSets.hh	symmetry / SymmetricConformation.fwd.hh
rotamer_set / symmetry / SymmetricRotamerSets.hh	symmetry / SymmetryInfo.fwd.hh
interaction_graph / SymmLinMemInteractionGraph.cc	Residue.hh
interaction_graph / SymmMinimalistInteractionGraph.cc	Residue.hh
interaction_graph / SymmOnTheFlyInteractionGraph.cc	Residue.hh
interaction_graph / SymmOnTheFlyInteractionGraph.cc	symmetry / SymmetricConformation.hh
interaction_graph / SymmOnTheFlyInteractionGraph.cc	symmetry / SymmetryInfo.hh
interaction_graph / SymmOnTheFlyInteractionGraph.hh	Residue.fwd.hh
interaction_graph / SymmOnTheFlyInteractionGraph.hh	symmetry / SymmetryInfo.fwd.hh
task / TaskFactory.cc	Residue.hh
rotamer_set / UnboundRotamersOperation.cc	Residue.hh
rotamer_set / UnboundRotamersOperation.hh	Residue.fwd.hh
util.cc	Conformation.hh
interaction_graph / util.cc	Conformation.hh
guidance_scoreterms / sap / util.cc	Residue.hh
util.cc	Residue.hh
interaction_graph / util.cc	Residue.hh
guidance_scoreterms / approximate_buried_unsat_penalty / util.cc	Residue.hh
guidance_scoreterms / approximate_buried_unsat_penalty / util.cc	symmetry / SymmetricConformation.hh
guidance_scoreterms / approximate_buried_unsat_penalty / util.cc	symmetry / SymmetryInfo.hh
interaction_graph / util.hh	Residue.fwd.hh
guidance_scoreterms / approximate_buried_unsat_penalty / util.hh	symmetry / SymmetryInfo.fwd.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.cc	Conformation.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.cc	Residue.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.cc	symmetry / SymmetricConformation.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.cc	symmetry / SymmetryInfo.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.hh	Residue.fwd.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.hh	symmetry / SymmetryInfo.fwd.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyVoxelGrid.cc	Conformation.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyVoxelGrid.cc	symmetry / MirrorSymmetricConformation.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyVoxelGrid.cc	Residue.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyVoxelGrid.cc	symmetry / SymmetricConformation.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyVoxelGrid.cc	symmetry / SymmetryInfo.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyVoxelGrid.hh	Residue.fwd.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyVoxelGrid.hh	symmetry / SymmetricConformation.fwd.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyVoxelGrid.hh	symmetry / SymmetryInfo.fwd.hh
rotamer_set / water_rotamer_building_functions.cc	Atom.hh
rotamer_set / water_rotamer_building_functions.cc	Residue.hh
rotamer_set / water_rotamer_building_functions.cc	ResidueFactory.hh
rotamer_set / water_rotamer_building_functions.cc	ResidueMatcher.hh
rotamer_set / water_rotamer_building_functions.hh	Residue.fwd.hh