pack → scoring Relation

File in src/core/pack	Includes file in src/core/scoring
rotamer_set / AddResiduesRotamerSetOperation.hh	ScoreFunction.hh
guidance_scoreterms / approximate_buried_unsat_penalty / ApproximateBuriedUnsatPenalty.cc	EnergyMap.hh
guidance_scoreterms / approximate_buried_unsat_penalty / ApproximateBuriedUnsatPenalty.cc	methods / EnergyMethodOptions.hh
guidance_scoreterms / approximate_buried_unsat_penalty / ApproximateBuriedUnsatPenalty.cc	hbonds / HBondOptions.hh
guidance_scoreterms / approximate_buried_unsat_penalty / ApproximateBuriedUnsatPenalty.cc	ScoreFunction.hh
guidance_scoreterms / approximate_buried_unsat_penalty / ApproximateBuriedUnsatPenalty.hh	methods / ContextDependentTwoBodyEnergy.hh
guidance_scoreterms / approximate_buried_unsat_penalty / ApproximateBuriedUnsatPenalty.hh	methods / EnergyMethodCreator.hh
guidance_scoreterms / approximate_buried_unsat_penalty / ApproximateBuriedUnsatPenalty.hh	methods / EnergyMethodOptions.hh
guidance_scoreterms / approximate_buried_unsat_penalty / ApproximateBuriedUnsatPenaltyCreator.hh	methods / EnergyMethod.fwd.hh
guidance_scoreterms / approximate_buried_unsat_penalty / ApproximateBuriedUnsatPenaltyCreator.hh	methods / EnergyMethodCreator.hh
guidance_scoreterms / approximate_buried_unsat_penalty / ApproximateBuriedUnsatPenaltyCreator.hh	methods / EnergyMethodOptions.fwd.hh
scmin / AtomTreeSCMinMinimizerMap.cc	DerivVectorPair.hh
scmin / AtomTreeSCMinMinimizerMap.hh	DerivVectorPair.hh
rotamer_set / bb_independent_rotamers.cc	ScoreFunction.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.cc	constraints / ConstraintSet.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.cc	Energies.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.cc	EnergiesCacheableDataType.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.cc	EnergyMap.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.cc	methods / EnergyMethod.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.cc	methods / EnergyMethodOptions.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.cc	hbonds / HBondOptions.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.cc	hbonds / HBondSet.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.cc	ScoringManager.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.hh	EnergyMap.fwd.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.hh	methods / EnergyMethod.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.hh	methods / EnergyMethodOptions.fwd.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.hh	hbonds / HBondOptions.fwd.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.hh	annealing / ResidueArrayAnnealableEnergy.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.hh	ScoreFunction.fwd.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.hh	TenANeighborGraph.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenalty.hh	methods / WholeStructureEnergy.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenaltyCreator.hh	methods / EnergyMethod.fwd.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenaltyCreator.hh	methods / EnergyMethodCreator.hh
guidance_scoreterms / buried_unsat_penalty / BuriedUnsatPenaltyCreator.hh	methods / EnergyMethodOptions.fwd.hh
guidance_scoreterms / buried_unsat_penalty / graph / BuriedUnsatPenaltyGraph.cc	hbonds / HBondDatabase.hh
guidance_scoreterms / buried_unsat_penalty / graph / BuriedUnsatPenaltyGraph.cc	hbonds / HBondOptions.hh
guidance_scoreterms / buried_unsat_penalty / graph / BuriedUnsatPenaltyGraph.cc	hbonds / hbonds.hh
guidance_scoreterms / buried_unsat_penalty / graph / BuriedUnsatPenaltyGraph.cc	hbonds / HBondSet.hh
guidance_scoreterms / buried_unsat_penalty / graph / BuriedUnsatPenaltyGraph.hh	hbonds / HBondDatabase.fwd.hh
guidance_scoreterms / buried_unsat_penalty / graph / BuriedUnsatPenaltyGraph.hh	hbonds / HBondOptions.fwd.hh
scmin / CartSCMinMinimizerMap.cc	DerivVectorPair.hh
scmin / CartSCMinMinimizerMap.hh	DerivVectorPair.hh
scmin / CartSCMinMultifunc.cc	DerivVectorPair.hh
scmin / CartSCMinMultifunc.cc	MinimizationGraph.hh
scmin / CartSCMinMultifunc.cc	ScoreFunction.hh
scmin / CartSCMinMultifunc.hh	MinimizationGraph.fwd.hh
scmin / CartSCMinMultifunc.hh	ScoreFunction.fwd.hh
scmin / CartSCMinMultifunc.hh	ScoreType.hh
dunbrack / cenrot / CenRotDunEnergy.cc	DerivVectorPair.hh
dunbrack / cenrot / CenRotDunEnergy.cc	EnergyMap.hh
dunbrack / cenrot / CenRotDunEnergy.cc	ScoringManager.hh
dunbrack / cenrot / CenRotDunEnergy.hh	methods / ContextIndependentOneBodyEnergy.hh
dunbrack / cenrot / CenRotDunEnergy.hh	ScoreFunction.fwd.hh
dunbrack / cenrot / CenRotDunEnergyCreator.hh	methods / EnergyMethod.fwd.hh
dunbrack / cenrot / CenRotDunEnergyCreator.hh	methods / EnergyMethodCreator.hh
dunbrack / cenrot / CenRotDunEnergyCreator.hh	methods / EnergyMethodOptions.fwd.hh
task / residue_selector / ClashBasedShellSelector.cc	EnergyGraph.hh
task / residue_selector / ClashBasedShellSelector.cc	ScoreFunction.hh
task / residue_selector / ClashBasedShellSelector.cc	ScoreFunctionFactory.hh
task / residue_selector / ClashBasedShellSelector.cc	xml_util.hh
task / residue_selector / ClashBasedShellSelector.hh	ScoreFunction.fwd.hh
rotamer_set / DeleteAllRotamerSetOperation.hh	ScoreFunction.fwd.hh
dunbrack / DunbrackConstraint.cc	EnergyMap.hh
dunbrack / DunbrackConstraint.cc	ScoreType.hh
dunbrack / DunbrackConstraint.cc	func / XYZ_Func.hh
dunbrack / DunbrackConstraint.hh	constraints / Constraint.hh
dunbrack / DunbrackConstraintCreator.hh	constraints / Constraint.fwd.hh
dunbrack / DunbrackConstraintCreator.hh	constraints / ConstraintCreator.hh
dunbrack / DunbrackEnergy.cc	EnergyMap.hh
dunbrack / DunbrackEnergy.cc	ScoreType.hh
dunbrack / DunbrackEnergy.hh	methods / ContextIndependentOneBodyEnergy.hh
dunbrack / DunbrackEnergy.hh	MinimizationData.fwd.hh
dunbrack / DunbrackEnergy.hh	ScoreFunction.fwd.hh
dunbrack / DunbrackEnergyCreator.hh	methods / EnergyMethod.fwd.hh
dunbrack / DunbrackEnergyCreator.hh	methods / EnergyMethodCreator.hh
dunbrack / DunbrackEnergyCreator.hh	methods / EnergyMethodOptions.fwd.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.cc	constraints / ConstraintSet.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.cc	Energies.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.cc	EnergyMap.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.cc	methods / EnergyMethod.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.cc	methods / EnergyMethodOptions.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.cc	ScoringManager.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.hh	EnergyMap.fwd.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.hh	methods / EnergyMethod.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.hh	methods / EnergyMethodOptions.fwd.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.hh	annealing / ResidueArrayAnnealableEnergy.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.hh	ScoreFunction.fwd.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.hh	TenANeighborGraph.hh
guidance_scoreterms / hbnet_energy / HBNetEnergy.hh	methods / WholeStructureEnergy.hh
guidance_scoreterms / hbnet_energy / HBNetEnergyCreator.hh	methods / EnergyMethod.fwd.hh
guidance_scoreterms / hbnet_energy / HBNetEnergyCreator.hh	methods / EnergyMethodCreator.hh
guidance_scoreterms / hbnet_energy / HBNetEnergyCreator.hh	methods / EnergyMethodOptions.fwd.hh
hbonds / HBondGraph_util.cc	Energies.hh
hbonds / HBondGraph_util.cc	hbonds / HBondDatabase.hh
hbonds / HBondGraph_util.cc	hbonds / graph / HBondGraph.hh
hbonds / HBondGraph_util.cc	hbonds / HBondOptions.hh
hbonds / HBondGraph_util.cc	hbonds / hbonds.hh
hbonds / HBondGraph_util.cc	hbonds / HBondSet.hh
hbonds / HBondGraph_util.cc	ScoreFunction.hh
hbonds / HBondGraph_util.cc	symmetry / SymmetricEnergies.hh
hbonds / HBondGraph_util.cc	TenANeighborGraph.hh
hbonds / HBondGraph_util.hh	hbonds / HBondDatabase.fwd.hh
hbonds / HBondGraph_util.hh	hbonds / graph / HBondGraph.hh
hbonds / HBondGraph_util.hh	hbonds / HBondSet.fwd.hh
hbonds / HBondGraphInitializerIG.hh	hbonds / graph / HBondGraph.hh
interaction_graph / HPatchEnergy.cc	Energies.hh
interaction_graph / HPatchEnergy.hh	methods / ContextDependentOneBodyEnergy.hh
interaction_graph / HPatchEnergy.hh	ScoreFunction.fwd.hh
interaction_graph / HPatchEnergyCreator.hh	methods / EnergyMethod.fwd.hh
interaction_graph / HPatchEnergyCreator.hh	methods / EnergyMethodCreator.hh
interaction_graph / HPatchEnergyCreator.hh	methods / EnergyMethodOptions.fwd.hh
interaction_graph / HPatchInteractionGraph.hh	sasa / util.hh
interaction_graph / InteractionGraphFactory.cc	Energies.hh
interaction_graph / InteractionGraphFactory.cc	ScoreFunction.hh
interaction_graph / InteractionGraphFactory.hh	ScoreFunction.fwd.hh
interaction_graph / LinearMemoryInteractionGraph.cc	Energies.hh
interaction_graph / LinearMemoryInteractionGraph.cc	EnergyGraph.hh
interaction_graph / LinearMemoryInteractionGraph.cc	ScoreFunction.hh
min_pack.cc	Energies.hh
min_pack.cc	EnergyGraph.hh
min_pack.cc	EnergyMap.hh
min_pack.cc	methods / LongRangeTwoBodyEnergy.hh
min_pack.cc	LREnergyContainer.hh
min_pack.cc	MinimizationGraph.hh
min_pack.cc	ScoreFunction.hh
min_pack.cc	ScoreFunctionFactory.hh
min_pack.cc	ScoreType.hh
min_pack.hh	MinimizationGraph.fwd.hh
min_pack.hh	ScoreFunction.fwd.hh
interaction_graph / NPDHBondInteractionGraph.cc	hbonds / hbonds.hh
interaction_graph / NPDHBondInteractionGraph.cc	sasa / util.hh
interaction_graph / NPDHBondInteractionGraph.hh	hbonds / constants.hh
interaction_graph / NPDHBondInteractionGraph.hh	Energies.hh
interaction_graph / NPDHBondInteractionGraph.hh	hbonds / HBondDatabase.hh
interaction_graph / NPDHBondInteractionGraph.hh	hbonds / HBondOptions.hh
interaction_graph / NPDHBondInteractionGraph.hh	hbonds / hbonds.hh
interaction_graph / NPDHBondInteractionGraph.hh	hbonds / NPDHBondSet.hh
interaction_graph / NPDHBondInteractionGraph.hh	ScoreFunction.hh
interaction_graph / NPDHBSimpleInteractionGraph.cc	ScoreFunction.hh
interaction_graph / NPDHBSimpleInteractionGraph.cc	util.hh
interaction_graph / NPDHBSimpleInteractionGraph.hh	hbonds / HBondDatabase.fwd.hh
interaction_graph / NPDHBSimpleInteractionGraph.hh	hbonds / HBondOptions.fwd.hh
interaction_graph / NPDHBSimpleInteractionGraph.hh	hbonds / NPDHBondSet.fwd.hh
interaction_graph / NPDHBSimpleInteractionGraph.hh	ScoreFunction.fwd.hh
interaction_graph / NPDHBSimpleInteractionGraph.hh	hbonds / types.hh
interaction_graph / OnTheFlyInteractionGraph.cc	methods / LongRangeTwoBodyEnergy.hh
interaction_graph / OnTheFlyInteractionGraph.cc	ScoreFunction.hh
interaction_graph / OnTheFlyInteractionGraph.cc	util.hh
interaction_graph / OnTheFlyInteractionGraph.hh	ScoreFunction.fwd.hh
optimizeH.cc	ScoreFunction.hh
optimizeH.cc	ScoreFunctionFactory.hh
optimizeH.hh	ScoreFunction.fwd.hh
pack_missing_sidechains.cc	ScoreFunction.hh
pack_missing_sidechains.cc	ScoreFunctionFactory.hh
pack_rotamers.cc	ScoreFunction.hh
pack_rotamers.hh	ScoreFunction.fwd.hh
packer_neighbors.cc	Energies.hh
packer_neighbors.cc	EnergyGraph.hh
packer_neighbors.cc	ScoreFunction.hh
packer_neighbors.cc	ScoreFunctionInfo.hh
packer_neighbors.hh	ScoreFunction.fwd.hh
guidance_scoreterms / sap / PerResidueSapScoreMetric.cc	sasa / SasaCalc.hh
interaction_graph / PrecomputedPairEnergiesInteractionGraph.cc	methods / LongRangeTwoBodyEnergy.hh
interaction_graph / PrecomputedPairEnergiesInteractionGraph.cc	ScoreFunction.hh
interaction_graph / PrecomputedPairEnergiesInteractionGraph.hh	methods / LongRangeTwoBodyEnergy.fwd.hh
rotamer_set / PyRotamerEliminator.cc	ScoreFunction.hh
rotamer_set / PyRotamerEliminator.hh	ScoreFunction.fwd.hh
interaction_graph / ResidueArrayAnnealingEvaluator.cc	annealing / ResidueArrayAnnealableEnergy.hh
interaction_graph / ResidueArrayAnnealingEvaluator.cc	ScoreFunction.hh
interaction_graph / ResidueArrayAnnealingEvaluator.cc	methods / WholeStructureEnergy.hh
interaction_graph / ResidueArrayAnnealingEvaluator.hh	annealing / ResidueArrayAnnealableEnergy.hh
interaction_graph / ResidueArrayAnnealingEvaluator.hh	ScoreFunction.fwd.hh
rotamer_set / rna_rotamer_building_functions.cc	constraints / AngleConstraint.hh
rotamer_set / rna_rotamer_building_functions.cc	constraints / AtomPairConstraint.hh
rotamer_set / rna_rotamer_building_functions.cc	constraints / ConstraintSet.hh
rotamer_set / rna_rotamer_building_functions.cc	func / Func.hh
rotamer_set / rna_rotamer_building_functions.cc	func / HarmonicFunc.hh
rotamer_set / rna_rotamer_building_functions.cc	rna / RNA_EnergyMethodOptions.hh
rotamer_set / rna_rotamer_building_functions.cc	rna / RNA_TorsionPotential.hh
rotamer_set / rna_rotamer_building_functions.cc	ScoreFunction.hh
rotamer_set / rotamer_building_functions.cc	constraints / AngleConstraint.hh
rotamer_set / rotamer_building_functions.cc	constraints / AtomPairConstraint.hh
rotamer_set / rotamer_building_functions.cc	constraints / ConstraintSet.hh
rotamer_set / rotamer_building_functions.cc	func / Func.hh
rotamer_set / rotamer_building_functions.cc	func / HarmonicFunc.hh
rotamer_set / rotamer_building_functions.cc	hbonds / HBEvalTuple.hh
rotamer_set / rotamer_building_functions.cc	hbonds / HBondDatabase.hh
rotamer_set / rotamer_building_functions.cc	hbonds / HBondOptions.hh
rotamer_set / rotamer_building_functions.cc	hbonds / hbonds_geom.hh
rotamer_set / rotamer_building_functions.cc	hbonds / HBondTypeManager.hh
rotamer_set / rotamer_building_functions.cc	ScoreFunction.hh
rotamer_set / rotamer_building_functions.hh	ScoreFunction.hh
rotamer_trials.cc	ScoreFunction.hh
rotamer_trials.hh	ScoreFunction.fwd.hh
dunbrack / RotamerConstraint.cc	EnergyMap.hh
dunbrack / RotamerConstraint.cc	ScoreType.hh
dunbrack / RotamerConstraint.cc	func / XYZ_Func.hh
dunbrack / RotamerConstraint.hh	constraints / Constraint.hh
interaction_graph / RotamerDots.cc	sasa / util.hh
dunbrack / RotamericSingleResidueDunbrackLibrary.tmpl.hh	ScoreFunction.fwd.hh
rotamer_set / RotamerSet.hh	EnergyMap.fwd.hh
rotamer_set / RotamerSet.hh	ScoreFunction.fwd.hh
rotamer_set / RotamerSet_.cc	Energies.hh
rotamer_set / RotamerSet_.cc	EnergyMap.hh
rotamer_set / RotamerSet_.cc	methods / LongRangeTwoBodyEnergy.hh
rotamer_set / RotamerSet_.cc	LREnergyContainer.hh
rotamer_set / RotamerSet_.cc	methods / Methods.hh
rotamer_set / RotamerSet_.cc	ScoreFunction.hh
rotamer_set / RotamerSet_.cc	TenANeighborGraph.hh
rotamer_set / RotamerSet_.hh	EnergyMap.fwd.hh
rotamer_set / RotamerSet_.hh	trie / RotamerTrieBase.fwd.hh
rotamer_set / RotamerSetOperation.hh	ScoreFunction.fwd.hh
rotamer_set / RotamerSets.cc	Energies.hh
rotamer_set / RotamerSets.cc	methods / LongRangeTwoBodyEnergy.hh
rotamer_set / RotamerSets.cc	LREnergyContainer.hh
rotamer_set / RotamerSets.cc	ScoreFunction.hh
rotamer_set / RotamerSets.cc	ScoreFunctionInfo.hh
rotamer_set / RotamerSets.fwd.hh	annealing / RotamerSets.fwd.hh
rotamer_set / RotamerSets.hh	ScoreFunction.fwd.hh
rotamer_set / RotamerSubset.cc	methods / Methods.hh
rotamer_set / RotamerSubset.hh	EnergyMap.fwd.hh
rotamer_set / RotamerSubset.hh	trie / RotamerTrieBase.fwd.hh
rotamer_set / RotamerSubset.hh	ScoreFunction.fwd.hh
rtmin.cc	Energies.hh
rtmin.cc	methods / EnergyMethod.hh
rtmin.cc	methods / LongRangeTwoBodyEnergy.hh
rtmin.cc	LREnergyContainer.hh
rtmin.cc	MinimizationGraph.hh
rtmin.cc	ScoreFunction.hh
rtmin.cc	ScoreFunctionFactory.hh
rtmin.hh	MinimizationGraph.fwd.hh
rtmin.hh	ScoreFunction.fwd.hh
guidance_scoreterms / sap / SapConstraint.cc	aa_composition_energy / AACompositionEnergySetup.hh
guidance_scoreterms / sap / SapConstraint.cc	constraints / ConstraintIO.hh
guidance_scoreterms / sap / SapConstraint.hh	aa_composition_energy / AACompositionEnergySetup.fwd.hh
guidance_scoreterms / sap / SapConstraint.hh	constraints / Constraint.hh
guidance_scoreterms / sap / SapConstraint.hh	EnergyMap.fwd.hh
guidance_scoreterms / sap / SapConstraint.hh	func / Func.fwd.hh
guidance_scoreterms / sap / SapConstraint.hh	ScoreType.hh
guidance_scoreterms / sap / SapConstraint.hh	aa_composition_energy / SequenceConstraint.hh
guidance_scoreterms / sap / SapConstraint.hh	func / XYZ_Func.fwd.hh
guidance_scoreterms / sap / SapConstraintEnergy.cc	aa_composition_energy / AACompositionConstraint.hh
guidance_scoreterms / sap / SapConstraintEnergy.cc	constraints / ConstraintSet.hh
guidance_scoreterms / sap / SapConstraintEnergy.cc	EnergyMap.hh
guidance_scoreterms / sap / SapConstraintEnergy.cc	methods / EnergyMethod.hh
guidance_scoreterms / sap / SapConstraintEnergy.cc	methods / EnergyMethodOptions.hh
guidance_scoreterms / sap / SapConstraintEnergy.cc	ScoringManager.hh
guidance_scoreterms / sap / SapConstraintEnergy.cc	aa_composition_energy / SequenceConstraint.hh
guidance_scoreterms / sap / SapConstraintEnergy.hh	EnergyMap.fwd.hh
guidance_scoreterms / sap / SapConstraintEnergy.hh	methods / EnergyMethod.hh
guidance_scoreterms / sap / SapConstraintEnergy.hh	methods / EnergyMethodOptions.fwd.hh
guidance_scoreterms / sap / SapConstraintEnergy.hh	annealing / ResidueArrayAnnealableEnergy.hh
guidance_scoreterms / sap / SapConstraintEnergy.hh	ScoreFunction.fwd.hh
guidance_scoreterms / sap / SapConstraintEnergy.hh	methods / WholeStructureEnergy.hh
guidance_scoreterms / sap / SapConstraintEnergyCreator.hh	methods / EnergyMethod.fwd.hh
guidance_scoreterms / sap / SapConstraintEnergyCreator.hh	methods / EnergyMethodCreator.hh
guidance_scoreterms / sap / SapConstraintEnergyCreator.hh	methods / EnergyMethodOptions.fwd.hh
guidance_scoreterms / sap / SapConstraintHelper.cc	constraints / ConstraintSet.hh
guidance_scoreterms / sap / SapConstraintHelper.cc	DerivVectorPair.hh
guidance_scoreterms / sap / SapConstraintHelper.cc	EnergyMap.hh
guidance_scoreterms / sap / SapConstraintHelper.cc	etable / EtableOptions.hh
guidance_scoreterms / sap / SapConstraintHelper.cc	sasa.hh
guidance_scoreterms / sap / SapConstraintHelper.cc	ScoreFunction.hh
guidance_scoreterms / sap / SapConstraintHelper.hh	methods / ContextIndependentTwoBodyEnergy.hh
guidance_scoreterms / sap / SapConstraintHelper.hh	methods / EnergyMethodCreator.hh
guidance_scoreterms / sap / SapConstraintHelper.hh	methods / EnergyMethodOptions.hh
guidance_scoreterms / sap / SapConstraintHelper.hh	ScoreFunction.hh
guidance_scoreterms / sap / SapConstraintOptions.cc	EnergyMap.hh
guidance_scoreterms / sap / SapConstraintOptions.hh	EnergyMap.fwd.hh
guidance_scoreterms / sap / SapConstraintOptions.hh	ScoreFunction.fwd.hh
guidance_scoreterms / sap / SapConstraintOptions.hh	methods / WholeStructureEnergy.hh
guidance_scoreterms / sap / SapDatabase.cc	ScoreFunctionFactory.hh
guidance_scoreterms / sap / SapMathConstraint.cc	aa_composition_energy / AACompositionEnergySetup.hh
guidance_scoreterms / sap / SapMathConstraint.cc	constraints / ConstraintIO.hh
guidance_scoreterms / sap / SapMathConstraint.hh	aa_composition_energy / AACompositionEnergySetup.fwd.hh
guidance_scoreterms / sap / SapMathConstraint.hh	constraints / Constraint.hh
guidance_scoreterms / sap / SapMathConstraint.hh	EnergyMap.fwd.hh
guidance_scoreterms / sap / SapMathConstraint.hh	func / Func.fwd.hh
guidance_scoreterms / sap / SapMathConstraint.hh	ScoreType.hh
guidance_scoreterms / sap / SapMathConstraint.hh	aa_composition_energy / SequenceConstraint.hh
guidance_scoreterms / sap / SapMathConstraint.hh	func / XYZ_Func.fwd.hh
guidance_scoreterms / sap / SapScoreMetric.cc	ScoreFunction.hh
guidance_scoreterms / sap / SapScoreMetric.cc	xml_util.hh
guidance_scoreterms / sap / SapScoreMetric.hh	ScoreFunction.fwd.hh
scmin / SCMinMinimizerMap.hh	DerivVectorPair.hh
scmin / SCMinMinimizerMap.hh	MinimizationGraph.fwd.hh
scmin / SCMinMinimizerMap.hh	ScoreFunction.fwd.hh
scmin / SCMinMultifunc.cc	DerivVectorPair.hh
scmin / SCMinMultifunc.cc	MinimizationGraph.hh
scmin / SCMinMultifunc.cc	ScoreFunction.hh
scmin / SCMinMultifunc.hh	MinimizationGraph.fwd.hh
scmin / SCMinMultifunc.hh	ScoreFunction.fwd.hh
scmin / SCMinMultifunc.hh	ScoreType.hh
interaction_graph / SimpleInteractionGraph.cc	Energies.hh
interaction_graph / SimpleInteractionGraph.cc	methods / EnergyMethod.hh
interaction_graph / SimpleInteractionGraph.cc	methods / LongRangeTwoBodyEnergy.hh
interaction_graph / SimpleInteractionGraph.cc	LREnergyContainer.hh
interaction_graph / SimpleInteractionGraph.cc	ScoreFunction.hh
interaction_graph / SimpleInteractionGraph.cc	util.hh
interaction_graph / SimpleInteractionGraph.hh	methods / EnergyMethod.fwd.hh
interaction_graph / SimpleInteractionGraph.hh	ScoreFunction.fwd.hh
interaction_graph / SimpleInteractionGraph.hh	ScoreType.hh
rotamers / SingleBasicRotamerLibrary.cc	Energies.hh
rotamers / SingleBasicRotamerLibrary.cc	TenANeighborGraph.hh
dunbrack / cenrot / SingleResidueCenrotLibrary.cc	ScoreFunction.hh
dunbrack / SingleResidueDunbrackLibrary.cc	ScoreFunction.hh
rotamers / SingleResidueRotamerLibrary.cc	ScoreFunction.hh
rotamers / SingleResidueRotamerLibrary.hh	ScoreFunction.fwd.hh
interaction_graph / SurfaceEnergy.cc	Energies.hh
interaction_graph / SurfaceEnergy.hh	methods / ContextDependentOneBodyEnergy.hh
interaction_graph / SurfaceEnergy.hh	ScoreFunction.fwd.hh
interaction_graph / SurfaceEnergyCreator.hh	methods / EnergyMethod.fwd.hh
interaction_graph / SurfaceEnergyCreator.hh	methods / EnergyMethodCreator.hh
interaction_graph / SurfaceEnergyCreator.hh	methods / EnergyMethodOptions.fwd.hh
interaction_graph / SurfaceInteractionGraph.hh	Energies.hh
interaction_graph / SurfaceInteractionGraph.hh	TenANeighborGraph.hh
interaction_graph / SurfacePotential.cc	Energies.hh
interaction_graph / SurfacePotential.cc	TenANeighborGraph.hh
interaction_graph / SurfacePotential.hh	EnergyMap.fwd.hh
rotamer_set / symmetry / SymmetricRotamerSet_.cc	Energies.hh
rotamer_set / symmetry / SymmetricRotamerSet_.cc	EnergyMap.hh
rotamer_set / symmetry / SymmetricRotamerSet_.cc	methods / LongRangeTwoBodyEnergy.hh
rotamer_set / symmetry / SymmetricRotamerSet_.cc	LREnergyContainer.hh
rotamer_set / symmetry / SymmetricRotamerSet_.cc	methods / Methods.hh
rotamer_set / symmetry / SymmetricRotamerSet_.cc	ScoreFunction.hh
rotamer_set / symmetry / SymmetricRotamerSet_.hh	EnergyMap.fwd.hh
rotamer_set / symmetry / SymmetricRotamerSets.cc	Energies.hh
rotamer_set / symmetry / SymmetricRotamerSets.cc	methods / LongRangeTwoBodyEnergy.hh
rotamer_set / symmetry / SymmetricRotamerSets.cc	LREnergyContainer.hh
rotamer_set / symmetry / SymmetricRotamerSets.cc	ScoreFunction.hh
interaction_graph / SymmLinMemInteractionGraph.cc	Energies.hh
interaction_graph / SymmLinMemInteractionGraph.cc	EnergyGraph.hh
interaction_graph / SymmLinMemInteractionGraph.cc	ScoreFunction.hh
interaction_graph / SymmMinimalistInteractionGraph.cc	Energies.hh
interaction_graph / SymmMinimalistInteractionGraph.cc	EnergyGraph.hh
interaction_graph / SymmMinimalistInteractionGraph.cc	ScoreFunction.hh
interaction_graph / SymmOnTheFlyInteractionGraph.cc	methods / LongRangeTwoBodyEnergy.hh
interaction_graph / SymmOnTheFlyInteractionGraph.cc	ScoreFunction.hh
interaction_graph / SymmOnTheFlyInteractionGraph.cc	util.hh
interaction_graph / SymmOnTheFlyInteractionGraph.hh	methods / EnergyMethod.fwd.hh
interaction_graph / SymmOnTheFlyInteractionGraph.hh	ScoreFunction.fwd.hh
interaction_graph / SymmOnTheFlyInteractionGraph.hh	ScoreType.hh
rotamer_set / UnboundRotamersOperation.hh	ScoreFunction.fwd.hh
guidance_scoreterms / approximate_buried_unsat_penalty / util.cc	atomic_depth / AtomicDepth.hh
guidance_scoreterms / sap / util.cc	sasa.hh
guidance_scoreterms / approximate_buried_unsat_penalty / util.cc	ScoreFunction.hh
guidance_scoreterms / sap / util.cc	packing / surf_vol.hh
guidance_scoreterms / approximate_buried_unsat_penalty / util.hh	hbonds / graph / HBondGraph.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.cc	constraints / ConstraintSet.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.cc	EnergyMap.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.cc	methods / EnergyMethod.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.cc	methods / EnergyMethodOptions.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.cc	ScoringManager.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.cc	aa_composition_energy / SequenceConstraint.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.hh	EnergyMap.fwd.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.hh	methods / EnergyMethod.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.hh	methods / EnergyMethodOptions.fwd.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.hh	annealing / ResidueArrayAnnealableEnergy.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.hh	ScoreFunction.fwd.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergy.hh	methods / WholeStructureEnergy.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergyCreator.hh	methods / EnergyMethod.fwd.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergyCreator.hh	methods / EnergyMethodCreator.hh
guidance_scoreterms / voids_penalty_energy / VoidsPenaltyEnergyCreator.hh	methods / EnergyMethodOptions.fwd.hh
rotamer_set / water_rotamer_building_functions.cc	constraints / AngleConstraint.hh
rotamer_set / water_rotamer_building_functions.cc	constraints / AtomPairConstraint.hh
rotamer_set / water_rotamer_building_functions.cc	constraints / ConstraintSet.hh
rotamer_set / water_rotamer_building_functions.cc	func / Func.hh
rotamer_set / water_rotamer_building_functions.cc	func / HarmonicFunc.hh
rotamer_set / water_rotamer_building_functions.cc	hbonds / HBEvalTuple.hh
rotamer_set / water_rotamer_building_functions.cc	hbonds / HBondDatabase.hh
rotamer_set / water_rotamer_building_functions.cc	hbonds / HBondOptions.hh
rotamer_set / water_rotamer_building_functions.cc	hbonds / hbonds_geom.hh
rotamer_set / water_rotamer_building_functions.cc	ScoreFunction.hh
rotamer_set / water_rotamer_building_functions.hh	ScoreFunction.fwd.hh