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comparative_modeling → core Relation

File in src/protocols/comparative_modelingIncludes file in src/core
Align_RmsdEvaluator.ccpose / Pose.hh
Align_RmsdEvaluator.ccscoring / rms_util.hh
Align_RmsdEvaluator.ccsequence / Sequence.hh
Align_RmsdEvaluator.ccsequence / SequenceAlignment.hh
Align_RmsdEvaluator.ccid / SequenceMapping.hh
Align_RmsdEvaluator.ccio / silent / SilentStruct.hh
Align_RmsdEvaluator.hhpose / Pose.fwd.hh
Align_RmsdEvaluator.hhsequence / SequenceAlignment.fwd.hh
Align_RmsdEvaluator.hhio / silent / silent.fwd.hh
Align_RmsdEvaluator.hhtypes.hh
Align_RotamerEvaluator.ccpack / dunbrack / DunbrackRotamer.fwd.hh
Align_RotamerEvaluator.ccpose / Pose.hh
Align_RotamerEvaluator.ccchemical / ResidueType.hh
Align_RotamerEvaluator.ccpack / dunbrack / RotamerLibrary.hh
Align_RotamerEvaluator.ccsequence / Sequence.hh
Align_RotamerEvaluator.ccsequence / SequenceAlignment.hh
Align_RotamerEvaluator.ccid / SequenceMapping.hh
Align_RotamerEvaluator.ccio / silent / SilentStruct.hh
Align_RotamerEvaluator.hhpose / Pose.fwd.hh
Align_RotamerEvaluator.hhsequence / SequenceAlignment.fwd.hh
Align_RotamerEvaluator.hhio / silent / silent.fwd.hh
Align_RotamerEvaluator.hhtypes.hh
AlignmentClustering.ccpose / annotated_sequence.hh
AlignmentClustering.cckinematics / FoldTree.hh
AlignmentClustering.ccimport_pose / import_pose.hh
AlignmentClustering.ccpose / Pose.hh
AlignmentClustering.ccchemical / ResidueTypeSet.fwd.hh
AlignmentClustering.ccscoring / rms_util.hh
AlignmentClustering.ccsequence / SequenceAlignment.hh
AlignmentClustering.cctypes.hh
AlignmentClustering.ccsequence / util.hh
AlignmentClustering.ccchemical / util.hh
AlignmentClustering.hhkinematics / Jump.hh
AlignmentClustering.hhpose / Pose.fwd.hh
AlignmentClustering.hhconformation / Residue.hh
AlignmentClustering.hhsequence / SequenceAlignment.fwd.hh
AlignmentClustering.hhtypes.hh
AlignmentSet.ccsequence / Sequence.hh
AlignmentSet.ccsequence / SequenceAlignment.hh
AlignmentSet.hhsequence / Sequence.hh
AlignmentSet.hhsequence / SequenceAlignment.hh
AlignRmsdTargetEvaluatorCreator.ccimport_pose / import_pose.hh
AlignRmsdTargetEvaluatorCreator.ccpose / Pose.hh
AlignRmsdTargetEvaluatorCreator.ccsequence / SequenceAlignment.fwd.hh
AlignRmsdTargetEvaluatorCreator.ccsequence / SequenceAlignment.hh
AlignRmsdTargetEvaluatorCreator.ccio / silent / silent.fwd.hh
AlignRmsdTargetEvaluatorCreator.ccio / silent / SilentStruct.hh
AlignRmsdTargetEvaluatorCreator.ccsequence / util.hh
AlignRmsdTargetEvaluatorCreator.hhtypes.hh
coord_util.ccpose / Pose.hh
coord_util.ccconformation / Residue.hh
coord_util.ccsequence / SequenceAlignment.hh
coord_util.ccid / SequenceMapping.hh
coord_util.hhpose / Pose.fwd.hh
coord_util.hhsequence / SequenceAlignment.fwd.hh
coord_util.hhtypes.hh
ExtraThreadingMover.ccid / AtomID.hh
ExtraThreadingMover.ccid / AtomID_Map.hh
ExtraThreadingMover.ccid / AtomID_Mask.fwd.hh
ExtraThreadingMover.ccpose / extra_pose_info_util.hh
ExtraThreadingMover.ccpose / PDBInfo.hh
ExtraThreadingMover.ccpose / Pose.hh
ExtraThreadingMover.ccconformation / Residue.fwd.hh
ExtraThreadingMover.ccchemical / ResidueTypeSet.hh
ExtraThreadingMover.ccscoring / rms_util.hh
ExtraThreadingMover.ccsequence / ScoringScheme.fwd.hh
ExtraThreadingMover.ccsequence / Sequence.hh
ExtraThreadingMover.ccsequence / SequenceAlignment.hh
ExtraThreadingMover.ccid / SequenceMapping.hh
ExtraThreadingMover.ccsequence / SimpleScoringScheme.hh
ExtraThreadingMover.ccsequence / SWAligner.hh
ExtraThreadingMover.cctypes.hh
ExtraThreadingMover.ccsequence / util.hh
ExtraThreadingMover.ccpose / util.hh
ExtraThreadingMover.ccpose / util.tmpl.hh
ExtraThreadingMover.hhpose / Pose.hh
ExtraThreadingMover.hhsequence / SequenceAlignment.hh
ExtraThreadingMover.hhid / SequenceMapping.hh
ExtraThreadingMover.hhtypes.hh
GenericJobInputter.ccchemical / ChemicalManager.hh
GenericJobInputter.ccpose / Pose.hh
GenericJobInputter.ccsequence / util.hh
GenericJobInputter.ccpose / symmetry / util.hh
GenericJobInputter.hhpose / Pose.fwd.hh
IgnoreSubsetConstraintSet.ccscoring / constraints / ConstraintSet.hh
IgnoreSubsetConstraintSet.ccconformation / Residue.hh
IgnoreSubsetConstraintSet.cctypes.hh
IgnoreSubsetConstraintSet.hhscoring / constraints / ConstraintSet.hh
IgnoreSubsetConstraintSet.hhpose / Pose.fwd.hh
IgnoreSubsetConstraintSet.hhscoring / ScoreFunction.fwd.hh
IgnoreSubsetConstraintSet.hhtypes.hh
LoopRelaxThreadingMover.ccfragment / FragSet.hh
LoopRelaxThreadingMover.ccpack / pack_rotamers.hh
LoopRelaxThreadingMover.ccpack / task / PackerTask.hh
LoopRelaxThreadingMover.ccpose / Pose.hh
LoopRelaxThreadingMover.ccscoring / ScoreFunction.hh
LoopRelaxThreadingMover.ccscoring / ScoreFunctionFactory.hh
LoopRelaxThreadingMover.ccsequence / SequenceAlignment.hh
LoopRelaxThreadingMover.ccid / SequenceMapping.hh
LoopRelaxThreadingMover.ccpack / task / TaskFactory.hh
LoopRelaxThreadingMover.ccsequence / util.hh
LoopRelaxThreadingMover.hhfragment / FragSet.hh
LoopRelaxThreadingMover.hhtypes.hh
MultiThreadingMover.ccid / AtomID.hh
MultiThreadingMover.ccid / AtomID_Map.hh
MultiThreadingMover.ccid / AtomID_Mask.fwd.hh
MultiThreadingMover.ccfragment / FragSet.fwd.hh
MultiThreadingMover.cckinematics / MoveMap.fwd.hh
MultiThreadingMover.ccpose / Pose.hh
MultiThreadingMover.ccconformation / Residue.fwd.hh
MultiThreadingMover.ccchemical / ResidueTypeSet.hh
MultiThreadingMover.ccscoring / ScoreFunction.fwd.hh
MultiThreadingMover.ccscoring / ScoreType.hh
MultiThreadingMover.ccsequence / ScoringScheme.fwd.hh
MultiThreadingMover.ccsequence / Sequence.hh
MultiThreadingMover.ccsequence / SequenceAlignment.hh
MultiThreadingMover.ccid / SequenceMapping.hh
MultiThreadingMover.cctypes.hh
MultiThreadingMover.ccpose / util.hh
MultiThreadingMover.ccpose / util.tmpl.hh
MultiThreadingMover.hhfragment / FragSet.fwd.hh
MultiThreadingMover.hhfragment / FragSet.hh
MultiThreadingMover.hhpose / Pose.hh
MultiThreadingMover.hhsequence / SequenceAlignment.hh
MultiThreadingMover.hhtypes.hh
PartialThreadingMover.ccconformation / Conformation.hh
PartialThreadingMover.ccpose / extra_pose_info_util.hh
PartialThreadingMover.ccimport_pose / import_pose.hh
PartialThreadingMover.ccpack / optimizeH.hh
PartialThreadingMover.ccpack / pack_missing_sidechains.hh
PartialThreadingMover.ccpose / PDBInfo.hh
PartialThreadingMover.ccconformation / Residue.functions.hh
PartialThreadingMover.ccconformation / Residue.fwd.hh
PartialThreadingMover.ccscoring / ScoreFunction.hh
PartialThreadingMover.ccscoring / ScoreFunctionFactory.hh
PartialThreadingMover.ccid / SequenceMapping.hh
PartialThreadingMover.cctypes.hh
PartialThreadingMover.ccpose / util.hh
PartialThreadingMover.ccsequence / util.hh
PartialThreadingMover.ccconformation / util.hh
PartialThreadingMover.hhpose / Pose.hh
PartialThreadingMover.hhsequence / SequenceAlignment.hh
PartialThreadingMover.hhtypes.hh
RecoverSideChainsMover.ccpose / Pose.hh
RecoverSideChainsMover.ccid / SequenceMapping.hh
RecoverSideChainsMover.cctypes.hh
RecoverSideChainsMover.hhpose / Pose.fwd.hh
features / ResidueFeature.ccid / SequenceMapping.hh
features / ResidueFeature.hhpose / Pose.fwd.hh
features / ResidueFeature.hhid / SequenceMapping.fwd.hh
features / ResidueFeature.hhtypes.hh
features / SSFeature.ccpose / Pose.hh
features / SSFeature.cctypes.hh
features / SSFeature.hhpose / Pose.fwd.hh
features / SSFeature.hhtypes.hh
StealLigandMover.ccid / NamedAtomID.hh
StealLigandMover.cctypes.hh
StealLigandMover.hhid / NamedAtomID.hh
StealLigandMover.hhpose / Pose.fwd.hh
StealLigandMover.hhtypes.hh
StealSideChainsMover.ccpose / Pose.hh
StealSideChainsMover.ccconformation / Residue.hh
StealSideChainsMover.ccid / SequenceMapping.hh
StealSideChainsMover.cctypes.hh
StealSideChainsMover.hhpose / Pose.fwd.hh
StealSideChainsMover.hhid / SequenceMapping.hh
ThreadingJob.ccpose / Pose.hh
ThreadingJob.ccsequence / ScoringScheme.fwd.hh
ThreadingJob.ccsequence / Sequence.hh
ThreadingJob.ccid / SequenceMapping.hh
ThreadingJob.ccsequence / SimpleScoringScheme.hh
ThreadingJob.ccsequence / SWAligner.hh
ThreadingJob.cctypes.hh
ThreadingJob.hhsequence / SequenceAlignment.hh
ThreadingJob.hhtypes.hh
ThreadingJobInputter.ccpose / annotated_sequence.hh
ThreadingJobInputter.ccchemical / ChemicalManager.hh
ThreadingJobInputter.ccimport_pose / import_pose.hh
ThreadingJobInputter.ccpose / PDBInfo.hh
ThreadingJobInputter.ccpose / Pose.hh
ThreadingJobInputter.ccsequence / Sequence.hh
ThreadingJobInputter.ccio / silent / SilentFileData.hh
ThreadingJobInputter.ccio / silent / SilentFileOptions.hh
ThreadingJobInputter.ccsequence / util.hh
ThreadingJobInputter.hhpose / Pose.fwd.hh
ThreadingJobInputter.hhsequence / SequenceAlignment.fwd.hh
ThreadingMover.ccid / AtomID.hh
ThreadingMover.ccid / AtomID_Map.hh
ThreadingMover.ccid / AtomID_Mask.fwd.hh
ThreadingMover.ccchemical / ChemicalManager.fwd.hh
ThreadingMover.ccpose / extra_pose_info_util.hh
ThreadingMover.ccfragment / FragSet.fwd.hh
ThreadingMover.cckinematics / MoveMap.fwd.hh
ThreadingMover.cckinematics / MoveMap.hh
ThreadingMover.ccid / NamedAtomID.hh
ThreadingMover.ccpack / optimizeH.hh
ThreadingMover.ccpack / pack_missing_sidechains.hh
ThreadingMover.ccpose / PDBInfo.hh
ThreadingMover.ccpose / Pose.hh
ThreadingMover.ccconformation / Residue.functions.hh
ThreadingMover.ccconformation / Residue.fwd.hh
ThreadingMover.ccchemical / ResidueTypeSet.hh
ThreadingMover.ccscoring / ScoreFunction.fwd.hh
ThreadingMover.ccscoring / ScoreFunction.hh
ThreadingMover.ccscoring / ScoreFunctionFactory.hh
ThreadingMover.ccscoring / ScoreType.hh
ThreadingMover.ccsequence / ScoringScheme.fwd.hh
ThreadingMover.ccsequence / Sequence.hh
ThreadingMover.ccsequence / SequenceAlignment.hh
ThreadingMover.ccid / SequenceMapping.hh
ThreadingMover.ccsequence / SimpleScoringScheme.hh
ThreadingMover.ccsequence / SWAligner.hh
ThreadingMover.ccutil / SwitchResidueTypeSet.hh
ThreadingMover.cctypes.hh
ThreadingMover.ccsequence / util.hh
ThreadingMover.ccpose / util.hh
ThreadingMover.ccpose / util.tmpl.hh
ThreadingMover.hhfragment / FragSet.fwd.hh
ThreadingMover.hhfragment / FragSet.hh
ThreadingMover.hhpose / Pose.hh
ThreadingMover.hhsequence / SequenceAlignment.hh
ThreadingMover.hhid / SequenceMapping.hh
ThreadingMover.hhtypes.hh
features / TorsionFeature.ccpose / Pose.hh
features / TorsionFeature.ccconformation / Residue.hh
features / TorsionFeature.cctypes.hh
features / TorsionFeature.hhpose / Pose.fwd.hh
features / TorsionFeature.hhtypes.hh
util.ccsequence / Aligner.hh
util.ccsequence / AlignerFactory.hh
util.ccchemical / ChemicalManager.fwd.hh
util.ccpose / extra_pose_info_util.hh
util.cckinematics / FoldTree.hh
util.ccimport_pose / import_pose.hh
util.ccid / NamedAtomID.hh
util.ccpose / Pose.hh
util.ccconformation / Residue.hh
util.ccchemical / ResidueTypeSet.hh
util.ccscoring / ScoreFunction.hh
util.ccscoring / ScoreType.hh
util.ccsequence / ScoringScheme.fwd.hh
util.ccsequence / ScoringScheme.hh
util.ccsequence / ScoringSchemeFactory.hh
util.ccsequence / Sequence.fwd.hh
util.ccsequence / Sequence.hh
util.ccsequence / SequenceAlignment.hh
util.ccid / SequenceMapping.hh
util.ccsequence / SequenceProfile.hh
util.ccsequence / SimpleScoringScheme.hh
util.ccsequence / SWAligner.hh
util.ccutil / SwitchResidueTypeSet.hh
util.cctypes.hh
util.ccsequence / util.hh
util.ccchemical / util.hh
util.ccpose / util.hh
util.hhid / AtomID_Mask.fwd.hh
util.hhid / NamedAtomID.fwd.hh
util.hhpose / Pose.fwd.hh
util.hhsequence / SequenceAlignment.fwd.hh
util.hhid / SequenceMapping.hh
util.hhtypes.hh
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