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dna → core Relation

File in src/protocols/dnaIncludes file in src/core
DesignProteinBackboneAroundDNA.ccscoring / methods / EnergyMethodOptions.hh
DesignProteinBackboneAroundDNA.cckinematics / FoldTree.hh
DesignProteinBackboneAroundDNA.ccpack / task / operation / OperateOnCertainResidues.hh
DesignProteinBackboneAroundDNA.ccpack / pack_rotamers.hh
DesignProteinBackboneAroundDNA.ccpack / task / PackerTask.hh
DesignProteinBackboneAroundDNA.ccpose / PDBInfo.hh
DesignProteinBackboneAroundDNA.ccpose / Pose.hh
DesignProteinBackboneAroundDNA.ccpack / task / operation / ResFilters.hh
DesignProteinBackboneAroundDNA.ccchemical / ResidueType.hh
DesignProteinBackboneAroundDNA.ccpack / task / operation / ResLvlTaskOperations.hh
DesignProteinBackboneAroundDNA.ccscoring / ScoreFunction.hh
DesignProteinBackboneAroundDNA.ccpack / task / TaskFactory.hh
DesignProteinBackboneAroundDNA.ccpack / task / operation / TaskOperations.hh
DnaChains.ccpose / PDBInfo.hh
DnaChains.ccpose / Pose.hh
DnaChains.ccchemical / ResidueType.hh
DnaChains.hhpose / Pose.fwd.hh
DnaChains.hhtypes.hh
DnaDesignDef.cctypes.hh
DnaInterfaceFinder.ccpose / Pose.hh
DnaInterfaceFinder.ccchemical / ResidueType.hh
DnaInterfaceFinder.hhpose / Pose.fwd.hh
DnaInterfaceFinder.hhtypes.hh
DnaInterfaceMinMover.ccoptimization / AtomTreeMinimizer.hh
DnaInterfaceMinMover.ccoptimization / MinimizerOptions.hh
DnaInterfaceMinMover.cckinematics / MoveMap.hh
DnaInterfaceMinMover.ccscoring / ScoreFunction.hh
DnaInterfaceMinMover.ccscoring / ScoreFunctionFactory.hh
DnaInterfaceMinMover.hhpose / Pose.fwd.hh
DnaInterfaceMultiStateDesign.ccpack / task / PackerTask.hh
DnaInterfaceMultiStateDesign.ccpose / PDBInfo.hh
DnaInterfaceMultiStateDesign.ccpose / Pose.hh
DnaInterfaceMultiStateDesign.ccconformation / Residue.hh
DnaInterfaceMultiStateDesign.ccchemical / ResidueTypeFinder.hh
DnaInterfaceMultiStateDesign.ccchemical / ResidueTypeSet.hh
DnaInterfaceMultiStateDesign.ccscoring / ScoreFunction.hh
DnaInterfaceMultiStateDesign.ccscoring / ScoreFunctionFactory.hh
DnaInterfaceMultiStateDesign.ccpack / task / TaskFactory.hh
DnaInterfaceMultiStateDesign.ccpack / task / operation / TaskOperations.hh
DnaInterfaceMultiStateDesign.ccpose / util.hh
DnaInterfaceMultiStateDesign.hhpack / task / PackerTask.fwd.hh
DnaInterfaceMultiStateDesign.hhpose / Pose.fwd.hh
DnaInterfacePacker.ccoptimization / AtomTreeMinimizer.hh
DnaInterfacePacker.ccpack / interaction_graph / InteractionGraphBase.hh
DnaInterfacePacker.ccoptimization / MinimizerOptions.hh
DnaInterfacePacker.cckinematics / MoveMap.hh
DnaInterfacePacker.ccpack / task / PackerTask.hh
DnaInterfacePacker.ccpose / PDBInfo.hh
DnaInterfacePacker.ccpose / Pose.hh
DnaInterfacePacker.ccconformation / Residue.hh
DnaInterfacePacker.ccchemical / ResidueType.hh
DnaInterfacePacker.ccchemical / ResidueTypeSet.hh
DnaInterfacePacker.ccpack / rotamer_set / RotamerSets.hh
DnaInterfacePacker.ccscoring / ScoreFunction.hh
DnaInterfacePacker.ccpack / task / TaskFactory.hh
DnaInterfacePacker.ccpack / task / operation / TaskOperations.hh
DnaInterfacePacker.cctypes.hh
DnaInterfacePacker.ccpose / util.hh
DnaInterfacePacker.ccchemical / VariantType.hh
DnaInterfacePacker.hhpack / interaction_graph / InteractionGraphBase.fwd.hh
DnaInterfacePacker.hhoptimization / MinimizerOptions.fwd.hh
DnaInterfacePacker.hhkinematics / MoveMap.fwd.hh
DnaInterfacePacker.hhpack / task / PackerTask.fwd.hh
DnaInterfacePacker.hhpose / Pose.fwd.hh
DnaInterfacePacker.hhchemical / ResidueType.fwd.hh
DnaInterfacePacker.hhchemical / ResidueTypeSet.fwd.hh
DnaInterfacePacker.hhpack / rotamer_set / RotamerSets.fwd.hh
DnaInterfacePacker.hhscoring / ScoreFunction.fwd.hh
DnaInterfacePacker.hhtypes.hh
DNAParameters.ccscoring / dna / base_geometry.hh
DNAParameters.ccpose / PDBInfo.hh
DNAParameters.ccpose / Pose.hh
DNAParameters.ccconformation / Residue.hh
DNAParameters.ccchemical / ResidueType.hh
DNAParameters.ccscoring / dna / setup.hh
DNAParameters.hhpose / Pose.fwd.hh
DNAParameters.hhconformation / Residue.fwd.hh
DNAParameters.hhtypes.hh
PDBOutput.ccchemical / AtomType.hh
PDBOutput.ccscoring / Energies.hh
PDBOutput.ccscoring / hbonds / hbonds.hh
PDBOutput.ccscoring / hbonds / hbonds_geom.hh
PDBOutput.ccscoring / hbonds / HBondSet.hh
PDBOutput.ccpack / task / PackerTask.hh
PDBOutput.ccpose / PDBInfo.hh
PDBOutput.ccpose / Pose.hh
PDBOutput.ccconformation / Residue.hh
PDBOutput.ccchemical / ResidueType.hh
PDBOutput.ccscoring / ScoreFunction.hh
PDBOutput.ccscoring / ScoreFunctionFactory.hh
PDBOutput.ccscoring / ScoreType.hh
PDBOutput.ccscoring / ScoreTypeManager.hh
PDBOutput.hhpack / task / PackerTask.fwd.hh
PDBOutput.hhpose / Pose.fwd.hh
PDBOutput.hhconformation / Residue.fwd.hh
PDBOutput.hhscoring / ScoreFunction.fwd.hh
PDBOutput.hhtypes.hh
RestrictDesignToProteinDNAInterface.ccchemical / AA.hh
RestrictDesignToProteinDNAInterface.ccscoring / constraints / ConstraintSet.hh
RestrictDesignToProteinDNAInterface.ccpack / task / PackerTask.hh
RestrictDesignToProteinDNAInterface.ccpose / PDBInfo.hh
RestrictDesignToProteinDNAInterface.ccpose / PDBPoseMap.hh
RestrictDesignToProteinDNAInterface.ccpose / Pose.hh
RestrictDesignToProteinDNAInterface.ccconformation / Residue.hh
RestrictDesignToProteinDNAInterface.ccchemical / ResidueType.hh
RestrictDesignToProteinDNAInterface.ccchemical / ResidueTypeFinder.hh
RestrictDesignToProteinDNAInterface.ccchemical / ResidueTypeSet.hh
RestrictDesignToProteinDNAInterface.ccpack / task / operation / task_op_schemas.hh
RestrictDesignToProteinDNAInterface.ccpose / util.hh
RestrictDesignToProteinDNAInterface.hhpack / task / PackerTask.fwd.hh
RestrictDesignToProteinDNAInterface.hhpose / Pose.fwd.hh
RestrictDesignToProteinDNAInterface.hhpack / task / operation / TaskOperation.hh
RestrictDesignToProteinDNAInterface.hhtypes.hh
RestrictDesignToProteinDNAInterfaceCreator.hhpack / task / operation / TaskOperationCreator.hh
RotamerDNAHBondFilter.ccconformation / Atom.hh
RotamerDNAHBondFilter.ccchemical / AtomType.hh
RotamerDNAHBondFilter.ccpack / dunbrack / ChiSet.hh
RotamerDNAHBondFilter.ccscoring / hbonds / constants.hh
RotamerDNAHBondFilter.ccscoring / hbonds / HBEvalTuple.hh
RotamerDNAHBondFilter.ccscoring / hbonds / HBondDatabase.hh
RotamerDNAHBondFilter.ccscoring / hbonds / HBondOptions.hh
RotamerDNAHBondFilter.ccscoring / hbonds / hbonds_geom.hh
RotamerDNAHBondFilter.ccpack / task / PackerTask.hh
RotamerDNAHBondFilter.ccpose / Pose.hh
RotamerDNAHBondFilter.ccconformation / Residue.fwd.hh
RotamerDNAHBondFilter.ccconformation / Residue.hh
RotamerDNAHBondFilter.ccscoring / ScoreFunction.hh
RotamerDNAHBondFilter.hhpack / dunbrack / ChiSet.fwd.hh
RotamerDNAHBondFilter.hhscoring / hbonds / HBondDatabase.fwd.hh
RotamerDNAHBondFilter.hhscoring / hbonds / HBondOptions.fwd.hh
RotamerDNAHBondFilter.hhpack / task / PackerTask.fwd.hh
RotamerDNAHBondFilter.hhpose / Pose.fwd.hh
RotamerDNAHBondFilter.hhpack / rotamer_set / RotamerSet.fwd.hh
RotamerDNAHBondFilter.hhpack / rotamer_set / RotamerSetOperation.hh
RotamerDNAHBondFilter.hhscoring / ScoreFunction.fwd.hh
SeparateDnaFromNonDna.ccconformation / Conformation.hh
SeparateDnaFromNonDna.cckinematics / FoldTree.hh
SeparateDnaFromNonDna.cckinematics / Jump.hh
SeparateDnaFromNonDna.ccpose / PDBInfo.hh
SeparateDnaFromNonDna.ccpose / Pose.hh
SeparateDnaFromNonDna.hhpose / Pose.fwd.hh
typedefs.hhchemical / ResidueType.fwd.hh
typedefs.hhtypes.hh
util.ccscoring / constraints / AngleConstraint.hh
util.ccconformation / Atom.hh
util.ccscoring / constraints / AtomPairConstraint.hh
util.ccscoring / dna / base_geometry.hh
util.ccscoring / dna / BasePartner.hh
util.ccscoring / constraints / ConstraintIO.hh
util.ccscoring / constraints / ConstraintSet.hh
util.ccenergy_methods / DNA_DihedralEnergy.hh
util.ccscoring / func / HarmonicFunc.hh
util.ccimport_pose / import_pose.hh
util.ccpack / task / PackerTask.hh
util.ccpose / PDBInfo.hh
util.ccpose / Pose.hh
util.ccconformation / Residue.hh
util.ccconformation / ResidueFactory.hh
util.ccpack / rotamer_set / RotamerSet.hh
util.ccpack / rotamer_set / RotamerSetFactory.hh
util.ccpack / rotamer_set / RotamerSets.hh
util.ccscoring / ScoreFunction.hh
util.ccscoring / ScoreFunctionFactory.hh
util.ccpack / task / TaskFactory.hh
util.ccchemical / VariantType.hh
util.hhchemical / AA.hh
util.hhconformation / Atom.fwd.hh
util.hhkinematics / FoldTree.hh
util.hhpack / task / PackerTask.fwd.hh
util.hhpose / Pose.fwd.hh
util.hhconformation / Residue.fwd.hh
util.hhchemical / ResidueType.fwd.hh
util.hhpack / rotamer_set / RotamerSets.fwd.hh
util.hhtypes.hh
WatsonCrickRotamerCouplings.ccpack / task / PackerTask.hh
WatsonCrickRotamerCouplings.ccpose / PDBInfo.hh
WatsonCrickRotamerCouplings.ccpose / Pose.hh
WatsonCrickRotamerCouplings.ccconformation / ResidueMatcher.hh
WatsonCrickRotamerCouplings.ccchemical / ResidueType.hh
WatsonCrickRotamerCouplings.ccpack / rotamer_set / RotamerCouplings.hh
WatsonCrickRotamerCouplings.ccpack / task / operation / task_op_schemas.hh
WatsonCrickRotamerCouplings.hhpack / task / operation / TaskOperation.hh
WatsonCrickRotamerCouplingsCreator.hhpack / task / operation / TaskOperationCreator.hh
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