features → core Relation

File in src/protocols/features	Includes file in src/core
AtomAtomPairFeatures.cc	chemical / AA.hh
AtomAtomPairFeatures.cc	chemical / AtomType.hh
AtomAtomPairFeatures.cc	chemical / AtomTypeSet.hh
AtomAtomPairFeatures.cc	chemical / ChemicalManager.hh
AtomAtomPairFeatures.cc	conformation / Conformation.hh
AtomAtomPairFeatures.cc	scoring / Energies.hh
AtomAtomPairFeatures.cc	pose / Pose.hh
AtomAtomPairFeatures.cc	conformation / Residue.hh
AtomAtomPairFeatures.cc	chemical / ResidueType.fwd.hh
AtomAtomPairFeatures.cc	scoring / TenANeighborGraph.hh
AtomAtomPairFeatures.cc	types.hh
AtomAtomPairFeatures.hh	pose / Pose.fwd.hh
AtomAtomPairFeatures.hh	types.hh
AtomAtomPairFeaturesCreator.hh	types.hh
AtomInResidueAtomInResiduePairFeatures.cc	chemical / AA.hh
AtomInResidueAtomInResiduePairFeatures.cc	conformation / Conformation.hh
AtomInResidueAtomInResiduePairFeatures.cc	scoring / Energies.hh
AtomInResidueAtomInResiduePairFeatures.cc	pose / Pose.hh
AtomInResidueAtomInResiduePairFeatures.cc	conformation / Residue.hh
AtomInResidueAtomInResiduePairFeatures.cc	chemical / ResidueType.fwd.hh
AtomInResidueAtomInResiduePairFeatures.cc	scoring / TenANeighborGraph.hh
AtomInResidueAtomInResiduePairFeatures.cc	types.hh
AtomInResidueAtomInResiduePairFeatures.hh	pose / Pose.fwd.hh
AtomInResidueAtomInResiduePairFeatures.hh	types.hh
AtomInResidueAtomInResiduePairFeaturesCreator.hh	types.hh
AtomTypesFeatures.cc	chemical / AtomType.hh
AtomTypesFeatures.cc	chemical / AtomTypeDatabaseIO.hh
AtomTypesFeatures.cc	chemical / AtomTypeSet.hh
AtomTypesFeatures.cc	pose / Pose.hh
AtomTypesFeatures.cc	conformation / Residue.hh
AtomTypesFeatures.cc	chemical / ResidueType.hh
AtomTypesFeatures.cc	types.hh
AtomTypesFeatures.hh	chemical / AtomTypeDatabaseIO.hh
AtomTypesFeatures.hh	types.hh
AtomTypesFeaturesCreator.hh	types.hh
BatchFeatures.cc	types.hh
BatchFeatures.hh	types.hh
BetaTurnDetection.cc	pose / Pose.hh
BetaTurnDetection.cc	conformation / Residue.hh
BetaTurnDetection.hh	pose / Pose.fwd.hh
BetaTurnDetection.hh	types.hh
BetaTurnDetectionFeatures.cc	pose / Pose.hh
BetaTurnDetectionFeatures.hh	types.hh
BetaTurnDetectionFeaturesCreator.hh	types.hh
ChargeChargeFeatures.cc	chemical / AA.hh
ChargeChargeFeatures.cc	conformation / Atom.hh
ChargeChargeFeatures.cc	pose / Pose.hh
ChargeChargeFeatures.cc	conformation / Residue.hh
ChargeChargeFeatures.cc	kinematics / Stub.hh
ChargeChargeFeatures.cc	types.hh
ChargeChargeFeatures.hh	types.hh
ChargeChargeFeaturesCreator.hh	types.hh
helixAssembly / ConcurrencyTest.cc	conformation / Atom.hh
helixAssembly / ConcurrencyTest.cc	conformation / Residue.hh
helixAssembly / ConcurrencyTest.cc	types.hh
helixAssembly / ConcurrencyTest.hh	conformation / Atom.hh
helixAssembly / ConcurrencyTest.hh	conformation / Residue.hh
helixAssembly / ConcurrencyTest.hh	types.hh
helixAssembly / ConcurrencyTestCreator.hh	types.hh
DatabaseFilters.cc	scoring / Energies.hh
DatabaseFilters.cc	pose / Pose.hh
DatabaseFilters.cc	scoring / ScoreFunction.hh
DatabaseFilters.cc	scoring / ScoreFunctionFactory.hh
DatabaseFilters.cc	types.hh
DatabaseFilters.cc	pose / symmetry / util.hh
DatabaseFilters.hh	pose / Pose.fwd.hh
DatabaseFilters.hh	types.hh
DatabaseJobInputter.cc	kinematics / Jump.hh
DatabaseJobInputter.cc	pose / Pose.hh
DatabaseJobInputter.cc	conformation / Residue.hh
DatabaseJobInputter.cc	scoring / ScoreFunction.hh
DatabaseJobInputter.cc	pose / symmetry / util.hh
DatabaseJobInputter.cc	pose / util.hh
DatabaseJobInputter.hh	pose / Pose.fwd.hh
DatabaseJobInputter.hh	scoring / ScoreFunction.fwd.hh
DatabaseJobOutputter.cc	pose / extra_pose_info_util.hh
DatabaseJobOutputter.cc	scoring / ScoreFunction.fwd.hh
DatabaseJobOutputter.hh	pose / Pose.fwd.hh
DatabaseJobOutputter.hh	types.hh
DatabaseStatements.hh	types.hh
DdGFeatures.cc	scoring / Energies.hh
DdGFeatures.cc	scoring / methods / EnergyMethodOptions.hh
DdGFeatures.cc	scoring / hbonds / HBondOptions.hh
DdGFeatures.cc	pose / Pose.hh
DdGFeatures.cc	conformation / Residue.hh
DdGFeatures.cc	scoring / ScoreFunction.hh
DdGFeatures.cc	scoring / ScoreFunctionFactory.hh
DdGFeatures.cc	scoring / ScoreTypeManager.hh
DdGFeatures.cc	types.hh
DdGFeatures.cc	pose / symmetry / util.hh
DdGFeatures.hh	pose / Pose.fwd.hh
DdGFeatures.hh	types.hh
DdGFeaturesCreator.hh	types.hh
feature_schemas.hh	types.hh
FeaturesReporter.cc	pose / datacache / CacheableDataType.hh
FeaturesReporter.cc	pose / PDBInfo.hh
FeaturesReporter.cc	pose / Pose.hh
FeaturesReporter.hh	pose / Pose.fwd.hh
FeaturesReporter.hh	types.hh
FeaturesReporterFactory.cc	scoring / ScoreFunction.fwd.hh
GeometricSolvationFeatures.cc	scoring / methods / EnergyMethodOptions.hh
GeometricSolvationFeatures.cc	energy_methods / ExactOccludedHbondSolEnergy.hh
GeometricSolvationFeatures.cc	pose / Pose.hh
GeometricSolvationFeatures.cc	types.hh
GeometricSolvationFeatures.hh	scoring / methods / EnergyMethodOptions.fwd.hh
GeometricSolvationFeatures.hh	energy_methods / ExactOccludedHbondSolEnergy.hh
GeometricSolvationFeatures.hh	types.hh
GeometricSolvationFeaturesCreator.cc	scoring / methods / EnergyMethodOptions.hh
GeometricSolvationFeaturesCreator.hh	types.hh
HBondFeatures.cc	id / AtomID_Map.hh
HBondFeatures.cc	chemical / AtomType.hh
HBondFeatures.cc	scoring / Energies.hh
HBondFeatures.cc	scoring / methods / EnergyMethodOptions.hh
HBondFeatures.cc	scoring / etable / EtableEnergy.hh
HBondFeatures.cc	scoring / hbonds / hbonds.hh
HBondFeatures.cc	scoring / hbonds / hbonds_geom.hh
HBondFeatures.cc	scoring / hbonds / HBondSet.hh
HBondFeatures.cc	scoring / hbonds / HBondTypeManager.hh
HBondFeatures.cc	pose / PDBInfo.hh
HBondFeatures.cc	pose / Pose.hh
HBondFeatures.cc	conformation / Residue.hh
HBondFeatures.cc	chemical / ResidueType.fwd.hh
HBondFeatures.cc	scoring / sasa.hh
HBondFeatures.cc	scoring / ScoreFunction.hh
HBondFeatures.cc	scoring / ScoreFunctionFactory.hh
HBondFeatures.cc	scoring / ScoreType.hh
HBondFeatures.cc	scoring / ScoringManager.hh
HBondFeatures.cc	scoring / TenANeighborGraph.hh
HBondFeatures.cc	types.hh
HBondFeatures.cc	pose / symmetry / util.hh
HBondFeatures.cc	pose / util.hh
HBondFeatures.cc	pose / util.tmpl.hh
HBondFeatures.hh	id / AtomID_Map.fwd.hh
HBondFeatures.hh	scoring / hbonds / HBondOptions.fwd.hh
HBondFeatures.hh	scoring / hbonds / HBondSet.fwd.hh
HBondFeatures.hh	pose / Pose.fwd.hh
HBondFeatures.hh	scoring / ScoreFunction.fwd.hh
HBondFeatures.hh	types.hh
HBondFeaturesCreator.hh	types.hh
HBondParameterFeatures.cc	scoring / methods / EnergyMethodOptions.hh
HBondParameterFeatures.cc	scoring / hbonds / HBondDatabase.hh
HBondParameterFeatures.cc	scoring / hbonds / HBondOptions.hh
HBondParameterFeatures.cc	chemical / ResidueType.hh
HBondParameterFeatures.cc	scoring / ScoreFunction.hh
HBondParameterFeatures.cc	scoring / ScoreFunctionFactory.hh
HBondParameterFeatures.cc	types.hh
HBondParameterFeatures.hh	scoring / ScoreFunction.fwd.hh
HBondParameterFeatures.hh	types.hh
HBondParameterFeaturesCreator.hh	types.hh
helixAssembly / HelicalFragment.cc	conformation / Residue.hh
helixAssembly / HelicalFragment.hh	pose / Pose.hh
helixAssembly / HelicalFragment.hh	types.hh
helixAssembly / HelixBundleFeatures.cc	conformation / Atom.hh
helixAssembly / HelixBundleFeatures.cc	scoring / Energies.hh
helixAssembly / HelixBundleFeatures.cc	scoring / EnergyGraph.hh
helixAssembly / HelixBundleFeatures.cc	conformation / Residue.hh
helixAssembly / HelixBundleFeatures.cc	scoring / sasa.hh
helixAssembly / HelixBundleFeatures.cc	scoring / ScoreFunction.hh
helixAssembly / HelixBundleFeatures.cc	scoring / ScoreFunctionFactory.hh
helixAssembly / HelixBundleFeatures.cc	scoring / ScoreType.hh
helixAssembly / HelixBundleFeatures.cc	types.hh
helixAssembly / HelixBundleFeatures.cc	pose / util.hh
helixAssembly / HelixBundleFeaturesCreator.hh	types.hh
HelixCapFeatures.cc	scoring / dssp / Dssp.hh
HelixCapFeatures.cc	pose / Pose.hh
HelixCapFeatures.cc	conformation / Residue.hh
HelixCapFeatures.cc	types.hh
HelixCapFeatures.hh	pose / Pose.fwd.hh
HelixCapFeatures.hh	scoring / ScoreFunction.fwd.hh
HelixCapFeaturesCreator.hh	types.hh
InterfaceDdGMover.cc	pose / chains_util.hh
InterfaceDdGMover.cc	scoring / ScoreFunction.hh
InterfaceDdGMover.cc	conformation / symmetry / SymmetricConformation.hh
InterfaceDdGMover.cc	conformation / symmetry / SymmetryInfo.hh
InterfaceDdGMover.cc	pose / symmetry / util.hh
InterfaceDdGMover.cc	pose / util.hh
InterfaceDdGMover.hh	pose / Pose.fwd.hh
InterfaceDdGMover.hh	scoring / ScoreFunction.fwd.hh
InterfaceFeatures.cc	pose / chains_util.hh
InterfaceFeatures.cc	scoring / ScoreFunctionFactory.hh
InterfaceFeatures.cc	pose / util.hh
InterfaceFeatures.hh	scoring / ScoreFunction.hh
InterfaceFeaturesCreator.hh	types.hh
JobDataFeaturesCreator.hh	types.hh
LoopAnchorFeatures.cc	conformation / Conformation.hh
LoopAnchorFeatures.cc	pose / Pose.hh
LoopAnchorFeatures.hh	conformation / Residue.fwd.hh
LoopAnchorFeaturesCreator.hh	types.hh
ModelFeatures.cc	pose / metrics / CalculatorFactory.hh
ModelFeatures.cc	conformation / Conformation.hh
ModelFeatures.cc	scoring / Energies.hh
ModelFeatures.cc	scoring / EnergyGraph.hh
ModelFeatures.cc	select / util / interface_vector_calculate.hh
ModelFeatures.cc	pose / PDBInfo.hh
ModelFeatures.cc	pose / metrics / PoseMetricCalculatorBase.fwd.hh
ModelFeatures.cc	conformation / Residue.hh
ModelFeatures.cc	scoring / ScoreFunction.hh
ModelFeaturesCreator.hh	types.hh
OrbitalsFeatures.cc	chemical / AtomType.hh
OrbitalsFeatures.cc	scoring / orbitals / OrbitalsLookup.hh
OrbitalsFeatures.cc	chemical / orbitals / OrbitalType.hh
OrbitalsFeatures.cc	pose / Pose.hh
OrbitalsFeatures.cc	conformation / Residue.hh
OrbitalsFeatures.cc	chemical / ResidueType.fwd.hh
OrbitalsFeatures.cc	types.hh
OrbitalsFeatures.hh	pose / Pose.fwd.hh
OrbitalsFeatures.hh	conformation / Residue.hh
OrbitalsFeatures.hh	types.hh
OrbitalsFeaturesCreator.hh	types.hh
PairFeatures.cc	conformation / Conformation.hh
PairFeatures.cc	scoring / Energies.hh
PairFeatures.cc	pose / Pose.hh
PairFeatures.cc	conformation / Residue.hh
PairFeatures.cc	chemical / ResidueType.fwd.hh
PairFeatures.cc	scoring / TenANeighborGraph.hh
PairFeatures.cc	types.hh
PairFeatures.hh	pose / Pose.fwd.hh
PairFeatures.hh	types.hh
PairFeaturesCreator.hh	types.hh
PdbDataFeatures.cc	pose / PDBInfo.hh
PdbDataFeatures.cc	pose / Pose.hh
PdbDataFeatures.cc	chemical / ResidueType.hh
PdbDataFeatures.hh	pose / Pose.fwd.hh
PdbDataFeaturesCreator.hh	types.hh
PoseCommentsFeatures.cc	chemical / AA.hh
PoseCommentsFeatures.cc	pose / extra_pose_info_util.hh
PoseCommentsFeatures.cc	conformation / Residue.hh
PoseCommentsFeatures.cc	types.hh
PoseCommentsFeatures.cc	pose / util.hh
PoseCommentsFeatures.hh	types.hh
PoseCommentsFeaturesCreator.hh	types.hh
PoseConformationFeatures.cc	chemical / AA.hh
PoseConformationFeatures.cc	pose / annotated_sequence.hh
PoseConformationFeatures.cc	chemical / ChemicalManager.hh
PoseConformationFeatures.cc	conformation / Conformation.hh
PoseConformationFeatures.cc	kinematics / FoldTree.hh
PoseConformationFeatures.cc	kinematics / Jump.hh
PoseConformationFeatures.cc	pose / Pose.hh
PoseConformationFeatures.cc	conformation / Residue.hh
PoseConformationFeatures.cc	chemical / ResidueTypeSet.hh
PoseConformationFeatures.cc	types.hh
PoseConformationFeatures.cc	io / util.hh
PoseConformationFeatures.cc	conformation / util.hh
PoseConformationFeatures.hh	types.hh
PoseConformationFeaturesCreator.hh	types.hh
ProteinBackboneAtomAtomPairFeatures.cc	chemical / AA.hh
ProteinBackboneAtomAtomPairFeatures.cc	conformation / Conformation.hh
ProteinBackboneAtomAtomPairFeatures.cc	scoring / Energies.hh
ProteinBackboneAtomAtomPairFeatures.cc	pose / Pose.hh
ProteinBackboneAtomAtomPairFeatures.cc	conformation / Residue.hh
ProteinBackboneAtomAtomPairFeatures.cc	chemical / ResidueType.fwd.hh
ProteinBackboneAtomAtomPairFeatures.cc	scoring / TenANeighborGraph.hh
ProteinBackboneAtomAtomPairFeatures.cc	types.hh
ProteinBackboneAtomAtomPairFeatures.hh	pose / Pose.fwd.hh
ProteinBackboneAtomAtomPairFeatures.hh	types.hh
ProteinBackboneAtomAtomPairFeaturesCreator.hh	types.hh
ProteinBackboneTorsionAngleFeatures.cc	pose / Pose.hh
ProteinBackboneTorsionAngleFeatures.cc	conformation / Residue.hh
ProteinBackboneTorsionAngleFeatures.hh	pose / Pose.fwd.hh
ProteinBackboneTorsionAngleFeatures.hh	types.hh
ProteinBackboneTorsionAngleFeaturesCreator.hh	types.hh
ProteinBondGeometryFeatures.cc	chemical / AtomType.hh
ProteinBondGeometryFeatures.cc	scoring / methods / CartBondedParameters.hh
ProteinBondGeometryFeatures.cc	energy_methods / CartesianBondedEnergy.hh
ProteinBondGeometryFeatures.cc	kinematics / FoldTree.hh
ProteinBondGeometryFeatures.cc	pose / PDBInfo.hh
ProteinBondGeometryFeatures.cc	pose / Pose.hh
ProteinBondGeometryFeatures.cc	conformation / Residue.hh
ProteinBondGeometryFeatures.cc	chemical / ResidueConnection.hh
ProteinBondGeometryFeatures.hh	energy_methods / CartesianBondedEnergy.fwd.hh
ProteinBondGeometryFeatures.hh	pose / Pose.fwd.hh
ProteinBondGeometryFeatures.hh	types.hh
ProteinBondGeometryFeaturesCreator.hh	types.hh
ProteinResidueConformationFeatures.cc	chemical / AA.hh
ProteinResidueConformationFeatures.cc	id / AtomID.hh
ProteinResidueConformationFeatures.cc	pose / Pose.hh
ProteinResidueConformationFeatures.cc	conformation / Residue.hh
ProteinResidueConformationFeatures.cc	types.hh
ProteinResidueConformationFeatures.cc	pose / util.hh
ProteinResidueConformationFeatures.cc	conformation / util.hh
ProteinResidueConformationFeatures.hh	types.hh
ProteinResidueConformationFeaturesCreator.hh	types.hh
ProteinRMSDFeatures.cc	chemical / AA.hh
ProteinRMSDFeatures.cc	import_pose / import_pose.hh
ProteinRMSDFeatures.cc	pose / Pose.hh
ProteinRMSDFeatures.cc	pose / ref_pose.hh
ProteinRMSDFeatures.cc	conformation / Residue.hh
ProteinRMSDFeatures.cc	scoring / rms_util.hh
ProteinRMSDFeatures.cc	scoring / rms_util.tmpl.hh
ProteinRMSDFeatures.cc	types.hh
ProteinRMSDFeatures.cc	pose / util.hh
ProteinRMSDFeatures.hh	pose / Pose.hh
ProteinRMSDFeatures.hh	types.hh
ProteinRMSDFeaturesCreator.hh	types.hh
ProteinRMSDNoSuperpositionFeatures.cc	chemical / AA.hh
ProteinRMSDNoSuperpositionFeatures.cc	import_pose / import_pose.hh
ProteinRMSDNoSuperpositionFeatures.cc	pose / Pose.hh
ProteinRMSDNoSuperpositionFeatures.cc	pose / ref_pose.hh
ProteinRMSDNoSuperpositionFeatures.cc	conformation / Residue.hh
ProteinRMSDNoSuperpositionFeatures.cc	scoring / rms_util.hh
ProteinRMSDNoSuperpositionFeatures.cc	scoring / rms_util.tmpl.hh
ProteinRMSDNoSuperpositionFeatures.cc	types.hh
ProteinRMSDNoSuperpositionFeatures.cc	pose / util.hh
ProteinRMSDNoSuperpositionFeatures.hh	pose / Pose.hh
ProteinRMSDNoSuperpositionFeatures.hh	types.hh
ProteinRMSDNoSuperpositionFeaturesCreator.hh	types.hh
ProteinSilentReport.cc	conformation / Conformation.hh
ProteinSilentReport.cc	scoring / Energies.hh
ProteinSilentReport.cc	pose / extra_pose_info_util.hh
ProteinSilentReport.cc	pose / Pose.hh
ProteinSilentReport.cc	scoring / ScoreType.hh
ProteinSilentReport.hh	pose / Pose.fwd.hh
ProteinSilentReport.hh	types.hh
ProtocolFeatures.cc	types.hh
ProtocolFeatures.hh	pose / Pose.fwd.hh
ProtocolFeatures.hh	types.hh
RadiusOfGyrationFeatures.cc	energy_methods / RG_Energy_Fast.hh
RadiusOfGyrationFeatures.cc	types.hh
RadiusOfGyrationFeatures.hh	pose / Pose.fwd.hh
RadiusOfGyrationFeatures.hh	types.hh
RadiusOfGyrationFeaturesCreator.hh	types.hh
Report.hh	pose / Pose.fwd.hh
Report.hh	types.hh
ReportToDB.cc	io / silent / BinarySilentStruct.hh
ReportToDB.cc	conformation / Conformation.hh
ReportToDB.cc	kinematics / Jump.hh
ReportToDB.cc	pack / task / PackerTask.hh
ReportToDB.cc	pose / PDBInfo.hh
ReportToDB.cc	pose / Pose.hh
ReportToDB.cc	conformation / Residue.hh
ReportToDB.cc	chemical / ResidueType.hh
ReportToDB.cc	pack / task / TaskFactory.hh
ReportToDB.cc	pose / symmetry / util.hh
ReportToDB.hh	pose / Pose.fwd.hh
ReportToDB.hh	pack / task / TaskFactory.fwd.hh
ReportToDB.hh	types.hh
ResidueBurialFeatures.cc	id / AtomID_Map.hh
ResidueBurialFeatures.cc	scoring / Energies.hh
ResidueBurialFeatures.cc	scoring / EnergyMap.hh
ResidueBurialFeatures.cc	scoring / methods / EnergyMethodOptions.fwd.hh
ResidueBurialFeatures.cc	scoring / nv / NVscore.hh
ResidueBurialFeatures.cc	pose / Pose.hh
ResidueBurialFeatures.cc	scoring / sasa.hh
ResidueBurialFeatures.cc	scoring / ScoreType.hh
ResidueBurialFeatures.cc	scoring / TenANeighborGraph.hh
ResidueBurialFeatures.cc	scoring / TwelveANeighborGraph.hh
ResidueBurialFeatures.cc	types.hh
ResidueBurialFeatures.hh	scoring / nv / NVscore.fwd.hh
ResidueBurialFeatures.hh	types.hh
ResidueBurialFeaturesCreator.hh	types.hh
ResidueConformationFeatures.cc	chemical / AA.hh
ResidueConformationFeatures.cc	id / AtomID.hh
ResidueConformationFeatures.cc	pose / Pose.hh
ResidueConformationFeatures.cc	conformation / Residue.hh
ResidueConformationFeatures.cc	types.hh
ResidueConformationFeatures.cc	pose / util.hh
ResidueConformationFeatures.cc	conformation / util.hh
ResidueConformationFeatures.hh	types.hh
ResidueConformationFeaturesCreator.hh	types.hh
ResidueFeatures.cc	pose / Pose.hh
ResidueFeatures.cc	conformation / Residue.hh
ResidueFeatures.cc	types.hh
ResidueFeatures.hh	types.hh
ResidueFeaturesCreator.hh	types.hh
ResidueGridScoresFeatures.cc	pose / chains_util.hh
ResidueGridScoresFeatures.cc	pose / util.hh
ResidueGridScoresFeatures.hh	pose / Pose.fwd.hh
ResidueScoresFeatures.cc	scoring / methods / ContextDependentLRTwoBodyEnergy.hh
ResidueScoresFeatures.cc	scoring / methods / ContextIndependentLRTwoBodyEnergy.hh
ResidueScoresFeatures.cc	scoring / Energies.hh
ResidueScoresFeatures.cc	scoring / EnergyGraph.hh
ResidueScoresFeatures.cc	scoring / LREnergyContainer.hh
ResidueScoresFeatures.cc	pose / Pose.hh
ResidueScoresFeatures.cc	conformation / Residue.hh
ResidueScoresFeatures.cc	scoring / ScoreFunction.hh
ResidueScoresFeatures.cc	scoring / ScoreFunctionFactory.hh
ResidueScoresFeatures.cc	scoring / ScoreType.hh
ResidueScoresFeatures.cc	scoring / ScoreTypeManager.hh
ResidueScoresFeatures.cc	types.hh
ResidueScoresFeatures.cc	pose / symmetry / util.hh
ResidueScoresFeatures.hh	pose / Pose.fwd.hh
ResidueScoresFeatures.hh	scoring / ScoreFunction.fwd.hh
ResidueScoresFeatures.hh	types.hh
ResidueScoresFeaturesCreator.hh	types.hh
ResidueSecondaryStructureFeatures.cc	scoring / dssp / Dssp.hh
ResidueSecondaryStructureFeatures.cc	pose / Pose.hh
ResidueSecondaryStructureFeatures.cc	conformation / Residue.hh
ResidueSecondaryStructureFeatures.cc	types.hh
ResidueSecondaryStructureFeatures.hh	pose / Pose.fwd.hh
ResidueSecondaryStructureFeatures.hh	types.hh
ResidueSecondaryStructureFeaturesCreator.hh	types.hh
ResidueTotalScoresFeatures.cc	scoring / Energies.hh
ResidueTotalScoresFeatures.cc	scoring / methods / EnergyMethodOptions.hh
ResidueTotalScoresFeatures.cc	scoring / hbonds / HBondOptions.hh
ResidueTotalScoresFeatures.cc	pose / Pose.hh
ResidueTotalScoresFeatures.cc	conformation / Residue.hh
ResidueTotalScoresFeatures.cc	scoring / ScoreFunction.hh
ResidueTotalScoresFeatures.cc	scoring / ScoreFunctionFactory.hh
ResidueTotalScoresFeatures.cc	scoring / ScoreTypeManager.hh
ResidueTotalScoresFeatures.cc	types.hh
ResidueTotalScoresFeatures.cc	pose / symmetry / util.hh
ResidueTotalScoresFeatures.hh	pose / Pose.fwd.hh
ResidueTotalScoresFeatures.hh	scoring / ScoreFunction.fwd.hh
ResidueTotalScoresFeatures.hh	types.hh
ResidueTotalScoresFeaturesCreator.hh	types.hh
ResidueTypesFeatures.cc	chemical / AtomType.hh
ResidueTypesFeatures.cc	chemical / ChemicalManager.hh
ResidueTypesFeatures.cc	pose / Pose.hh
ResidueTypesFeatures.cc	chemical / ResidueDatabaseIO.hh
ResidueTypesFeatures.cc	chemical / ResidueType.hh
ResidueTypesFeatures.cc	chemical / ResidueTypeSet.hh
ResidueTypesFeatures.cc	types.hh
ResidueTypesFeatures.hh	chemical / ResidueDatabaseIO.hh
ResidueTypesFeatures.hh	chemical / ResidueType.fwd.hh
ResidueTypesFeatures.hh	types.hh
ResidueTypesFeaturesCreator.hh	types.hh
RotamerBoltzmannWeightFeatures.cc	pose / Pose.hh
RotamerBoltzmannWeightFeatures.cc	scoring / ScoreFunction.hh
RotamerBoltzmannWeightFeatures.cc	types.hh
RotamerBoltzmannWeightFeatures.hh	scoring / ScoreFunction.fwd.hh
RotamerBoltzmannWeightFeatures.hh	types.hh
RotamerBoltzmannWeightFeaturesCreator.hh	types.hh
RotamerFeatures.cc	chemical / AA.hh
RotamerFeatures.cc	id / AtomID.hh
RotamerFeatures.cc	chemical / ChemicalManager.hh
RotamerFeatures.cc	pack / dunbrack / DunbrackRotamer.hh
RotamerFeatures.cc	chemical / rotamers / NCAARotamerLibrarySpecification.hh
RotamerFeatures.cc	pose / Pose.hh
RotamerFeatures.cc	conformation / Residue.hh
RotamerFeatures.cc	chemical / ResidueTypeSet.hh
RotamerFeatures.cc	pack / dunbrack / RotamericSingleResidueDunbrackLibrary.hh
RotamerFeatures.cc	pack / dunbrack / RotamericSingleResidueDunbrackLibrary.tmpl.hh
RotamerFeatures.cc	pack / dunbrack / RotamerLibrary.hh
RotamerFeatures.cc	pack / dunbrack / RotamerLibraryScratchSpace.hh
RotamerFeatures.cc	types.hh
RotamerFeatures.cc	conformation / util.hh
RotamerFeatures.hh	pack / dunbrack / DunbrackRotamer.hh
RotamerFeatures.hh	conformation / Residue.hh
RotamerFeatures.hh	pack / dunbrack / RotamericSingleResidueDunbrackLibrary.hh
RotamerFeatures.hh	pack / dunbrack / RotamericSingleResidueDunbrackLibrary.tmpl.hh
RotamerFeatures.hh	pack / dunbrack / RotamerLibrary.hh
RotamerFeatures.hh	pack / dunbrack / RotamerLibraryScratchSpace.hh
RotamerFeatures.hh	pack / rotamers / SingleResidueRotamerLibraryFactory.hh
RotamerFeatures.hh	types.hh
RotamerFeaturesCreator.hh	types.hh
RotamerRecoveryFeatures.cc	import_pose / import_pose.hh
RotamerRecoveryFeatures.cc	pack / task / PackerTask.hh
RotamerRecoveryFeatures.cc	pose / Pose.hh
RotamerRecoveryFeatures.cc	scoring / ScoreFunction.hh
RotamerRecoveryFeatures.cc	scoring / ScoreFunctionFactory.hh
RotamerRecoveryFeatures.cc	pack / task / TaskFactory.hh
RotamerRecoveryFeatures.cc	pack / task / operation / TaskOperations.fwd.hh
RotamerRecoveryFeatures.cc	types.hh
RotamerRecoveryFeatures.cc	pose / symmetry / util.hh
RotamerRecoveryFeatures.hh	pose / Pose.fwd.hh
RotamerRecoveryFeatures.hh	scoring / ScoreFunction.fwd.hh
RotamerRecoveryFeatures.hh	pack / task / TaskFactory.hh
RotamerRecoveryFeatures.hh	types.hh
RotamerRecoveryFeaturesCreator.hh	types.hh
RuntimeFeatures.cc	pose / Pose.hh
RuntimeFeatures.cc	types.hh
RuntimeFeatures.hh	pose / Pose.fwd.hh
RuntimeFeatures.hh	types.hh
SaltBridgeFeatures.cc	chemical / AA.hh
SaltBridgeFeatures.cc	conformation / Atom.hh
SaltBridgeFeatures.cc	pose / Pose.hh
SaltBridgeFeatures.cc	conformation / Residue.hh
SaltBridgeFeatures.cc	kinematics / Stub.hh
SaltBridgeFeatures.cc	types.hh
SaltBridgeFeatures.hh	types.hh
SaltBridgeFeaturesCreator.hh	types.hh
strand_assembly / SandwichFeatures.cc	pose / Pose.hh
strand_assembly / SandwichFeatures.cc	types.hh
strand_assembly / SandwichFeaturesCreator.hh	types.hh
strand_assembly / SandwichFragment.hh	pose / Pose.hh
strand_assembly / SandwichFragment.hh	conformation / Residue.hh
strand_assembly / SandwichFragment.hh	types.hh
ScoreFunctionFeatures.cc	scoring / Energies.fwd.hh
ScoreFunctionFeatures.cc	scoring / EnergiesCacheableDataType.hh
ScoreFunctionFeatures.cc	scoring / EnergyMap.hh
ScoreFunctionFeatures.cc	scoring / methods / EnergyMethodOptions.hh
ScoreFunctionFeatures.cc	scoring / hbonds / HBondOptions.hh
ScoreFunctionFeatures.cc	scoring / hbonds / hbonds.hh
ScoreFunctionFeatures.cc	scoring / ScoreFunction.hh
ScoreFunctionFeatures.cc	scoring / ScoreFunctionFactory.hh
ScoreFunctionFeatures.cc	scoring / ScoreType.hh
ScoreFunctionFeatures.cc	scoring / ScoreTypeManager.hh
ScoreFunctionFeatures.hh	pose / Pose.fwd.hh
ScoreFunctionFeatures.hh	scoring / ScoreFunction.fwd.hh
ScoreFunctionFeaturesCreator.hh	types.hh
ScoreTypeFeatures.cc	scoring / Energies.fwd.hh
ScoreTypeFeatures.cc	scoring / EnergiesCacheableDataType.hh
ScoreTypeFeatures.cc	scoring / EnergyMap.hh
ScoreTypeFeatures.cc	scoring / hbonds / hbonds.hh
ScoreTypeFeatures.cc	scoring / ScoreFunction.hh
ScoreTypeFeatures.cc	scoring / ScoreFunctionFactory.hh
ScoreTypeFeatures.cc	scoring / ScoreType.hh
ScoreTypeFeatures.cc	scoring / ScoreTypeManager.hh
ScoreTypeFeatures.hh	pose / Pose.fwd.hh
ScoreTypeFeatures.hh	scoring / ScoreFunction.fwd.hh
ScoreTypeFeaturesCreator.hh	types.hh
ScreeningFeatures.cc	pose / chains_util.hh
ScreeningFeatures.cc	pose / Pose.hh
ScreeningFeatures.cc	chemical / ResidueType.hh
ScreeningFeatures.cc	pose / util.hh
ScreeningFeaturesCreator.hh	types.hh
SecondaryStructureSegmentFeatures.cc	scoring / dssp / Dssp.hh
SecondaryStructureSegmentFeatures.cc	pose / Pose.hh
SecondaryStructureSegmentFeatures.cc	conformation / Residue.hh
SecondaryStructureSegmentFeatures.cc	types.hh
SecondaryStructureSegmentFeatures.hh	pose / Pose.fwd.hh
SecondaryStructureSegmentFeatures.hh	scoring / ScoreFunction.fwd.hh
SecondaryStructureSegmentFeaturesCreator.hh	types.hh
SimpleMetricFeatures.cc	simple_metrics / CompositeRealMetric.hh
SimpleMetricFeatures.cc	simple_metrics / CompositeStringMetric.hh
SimpleMetricFeatures.cc	simple_metrics / PerResidueRealMetric.hh
SimpleMetricFeatures.cc	simple_metrics / PerResidueStringMetric.hh
SimpleMetricFeatures.cc	pose / Pose.hh
SimpleMetricFeatures.cc	simple_metrics / RealMetric.hh
SimpleMetricFeatures.cc	simple_metrics / SimpleMetric.hh
SimpleMetricFeatures.cc	simple_metrics / SimpleMetricFactory.hh
SimpleMetricFeatures.cc	simple_metrics / StringMetric.hh
SimpleMetricFeatures.cc	types.hh
SimpleMetricFeatures.cc	pose / util.hh
SimpleMetricFeatures.cc	simple_metrics / util.hh
SimpleMetricFeatures.hh	pose / Pose.hh
SimpleMetricFeatures.hh	simple_metrics / SimpleMetric.fwd.hh
SimpleMetricFeatures.hh	types.hh
SimpleMetricFeaturesCreator.hh	types.hh
SmotifFeatures.cc	scoring / dssp / Dssp.hh
SmotifFeatures.cc	pose / Pose.hh
SmotifFeatures.cc	conformation / Residue.hh
SmotifFeatures.cc	types.hh
SmotifFeatures.hh	pose / Pose.fwd.hh
SmotifFeatures.hh	scoring / ScoreFunction.fwd.hh
SmotifFeaturesCreator.hh	types.hh
strand_assembly / StrandAssemblyCommon.hh	conformation / Atom.hh
strand_assembly / StrandAssemblyCommon.hh	conformation / Conformation.hh
strand_assembly / StrandAssemblyCommon.hh	scoring / dssp / Dssp.hh
strand_assembly / StrandAssemblyCommon.hh	scoring / Energies.hh
strand_assembly / StrandAssemblyCommon.hh	scoring / EnergyMap.hh
strand_assembly / StrandAssemblyCommon.hh	id / NamedAtomID.hh
strand_assembly / StrandAssemblyCommon.hh	pose / PDBInfo.hh
strand_assembly / StrandAssemblyCommon.hh	pose / Pose.fwd.hh
strand_assembly / StrandAssemblyCommon.hh	pose / Pose.hh
strand_assembly / StrandAssemblyCommon.hh	conformation / Residue.hh
strand_assembly / StrandAssemblyCommon.hh	scoring / ScoreFunction.hh
strand_assembly / StrandAssemblyCommon.hh	scoring / ScoreFunctionFactory.hh
strand_assembly / StrandAssemblyCommon.hh	types.hh
strand_assembly / StrandBundleFeatures.cc	conformation / Atom.hh
strand_assembly / StrandBundleFeatures.cc	conformation / Residue.hh
strand_assembly / StrandBundleFeatures.cc	scoring / ScoreFunction.hh
strand_assembly / StrandBundleFeatures.cc	types.hh
strand_assembly / StrandBundleFeaturesCreator.hh	types.hh
strand_assembly / StrandFragment.cc	conformation / Residue.hh
strand_assembly / StrandFragment.hh	pose / Pose.hh
strand_assembly / StrandFragment.hh	types.hh
StructureFeatures.cc	io / silent / BinarySilentStruct.hh
StructureFeatures.cc	pose / extra_pose_info_util.hh
StructureFeatures.cc	pose / Pose.hh
StructureFeatures.cc	pose / variant_util.hh
StructureFeatures.hh	pose / Pose.fwd.hh
StructureFeaturesCreator.hh	types.hh
StructureScoresFeatures.cc	scoring / Energies.hh
StructureScoresFeatures.cc	scoring / EnergiesCacheableDataType.hh
StructureScoresFeatures.cc	scoring / EnergyMap.hh
StructureScoresFeatures.cc	scoring / hbonds / hbonds.hh
StructureScoresFeatures.cc	pose / Pose.hh
StructureScoresFeatures.cc	conformation / Residue.hh
StructureScoresFeatures.cc	scoring / ScoreFunction.hh
StructureScoresFeatures.cc	scoring / ScoreFunctionFactory.hh
StructureScoresFeatures.cc	scoring / ScoreType.hh
StructureScoresFeatures.cc	scoring / ScoreTypeManager.hh
StructureScoresFeatures.cc	pose / symmetry / util.hh
StructureScoresFeatures.hh	scoring / EnergyMap.fwd.hh
StructureScoresFeatures.hh	pose / Pose.fwd.hh
StructureScoresFeatures.hh	scoring / ScoreFunction.fwd.hh
StructureScoresFeaturesCreator.hh	types.hh
TaskOperationFeatures.cc	scoring / Energies.hh
TaskOperationFeatures.cc	pose / Pose.hh
TaskOperationFeatures.cc	pack / task / operation / TaskOperation.hh
TaskOperationFeatures.cc	types.hh
TaskOperationFeatures.cc	pose / util.hh
TaskOperationFeatures.cc	pose / util.tmpl.hh
TaskOperationFeatures.hh	pose / Pose.fwd.hh
TaskOperationFeatures.hh	pack / task / TaskFactory.hh
TaskOperationFeatures.hh	types.hh
TaskOperationFeaturesCreator.hh	types.hh
TotalScoreFeatures.cc	pose / Pose.hh
TotalScoreFeatures.cc	scoring / ScoreFunction.hh
TotalScoreFeatures.cc	scoring / ScoreFunctionFactory.hh
TotalScoreFeatures.cc	pose / symmetry / util.hh
TotalScoreFeatures.hh	pose / Pose.fwd.hh
TotalScoreFeatures.hh	scoring / ScoreFunction.fwd.hh
TotalScoreFeatures.hh	types.hh
TrajectoryMapFeatures.cc	pose / Pose.hh
TrajectoryMapFeatures.cc	conformation / Residue.hh
TrajectoryMapFeatures.cc	types.hh
TrajectoryMapFeatures.hh	types.hh
TrajectoryMapFeaturesCreator.hh	types.hh
TrajectoryReportToDB.hh	pose / Pose.fwd.hh
TrajectoryReportToDB.hh	types.hh
UnrecognizedAtomFeatures.cc	io / pdb / build_pose_as_is.hh
UnrecognizedAtomFeatures.cc	pose / PDBInfo.hh
UnrecognizedAtomFeatures.cc	pose / Pose.hh
UnrecognizedAtomFeatures.cc	conformation / Residue.hh
UnrecognizedAtomFeatures.cc	types.hh
UnrecognizedAtomFeatures.hh	pose / Pose.fwd.hh
UnrecognizedAtomFeatures.hh	types.hh
UnrecognizedAtomFeaturesCreator.hh	types.hh
util.cc	conformation / Residue.hh
util.cc	types.hh
util.hh	conformation / Residue.fwd.hh
util.hh	types.hh
WaterFeatures.cc	conformation / Atom.hh
WaterFeatures.cc	pose / PDBInfo.hh
WaterFeatures.cc	pose / Pose.hh
WaterFeatures.cc	conformation / Residue.hh
WaterFeatures.cc	types.hh
WaterFeatures.hh	types.hh
WaterFeaturesCreator.hh	types.hh