forge → core Relation

File in src/protocols/forge	Includes file in src/core
components / BDR.cc	chemical / AA.hh
components / BDR.cc	pose / annotated_sequence.hh
components / BDR.cc	pose / metrics / CalculatorFactory.hh
components / BDR.cc	scoring / dssp / Dssp.hh
components / BDR.cc	scoring / Energies.hh
components / BDR.cc	kinematics / FoldTree.hh
components / BDR.cc	pack / task / operation / NoRepackDisulfides.hh
components / BDR.cc	pack / task / PackerTask.hh
components / BDR.cc	pose / Pose.hh
components / BDR.cc	chemical / ResidueTypeSet.hh
components / BDR.cc	scoring / ScoreFunction.hh
components / BDR.cc	scoring / ScoreFunctionFactory.hh
components / BDR.cc	util / SwitchResidueTypeSet.hh
components / BDR.cc	pack / task / TaskFactory.hh
components / BDR.cc	pack / task / operation / TaskOperations.hh
components / BDR.hh	pose / Pose.fwd.hh
components / BDR.hh	scoring / ScoreFunction.fwd.hh
components / BDR.hh	pack / task / TaskFactory.fwd.hh
components / BDR.hh	types.hh
build / Bridge.cc	pose / annotated_sequence.hh
build / Bridge.cc	conformation / signals / LengthEvent.hh
build / Bridge.cc	kinematics / MoveMap.hh
build / Bridge.cc	pose / Pose.hh
build / Bridge.cc	chemical / ResidueTypeSet.hh
build / Bridge.cc	conformation / util.hh
build / BuildInstruction.cc	conformation / Conformation.hh
build / BuildInstruction.cc	scoring / Energies.hh
build / BuildInstruction.cc	conformation / signals / LengthEvent.hh
build / BuildInstruction.cc	pose / Pose.hh
build / BuildInstruction.cc	chemical / ResidueTypeSet.hh
build / BuildInstruction.hh	chemical / ChemicalManager.hh
build / BuildInstruction.hh	conformation / signals / LengthEvent.fwd.hh
build / BuildInstruction.hh	kinematics / MoveMap.fwd.hh
build / BuildInstruction.hh	pose / Pose.fwd.hh
build / BuildInstruction.hh	chemical / ResidueTypeSet.fwd.hh
build / BuildInstruction.hh	types.hh
build / BuildManager.cc	pose / annotated_sequence.hh
build / BuildManager.cc	kinematics / FoldTree.hh
build / BuildManager.cc	kinematics / MoveMap.hh
build / BuildManager.cc	pose / Pose.hh
build / BuildManager.cc	conformation / ResidueFactory.hh
build / BuildManager.cc	chemical / ResidueType.hh
build / BuildManager.cc	chemical / ResidueTypeSet.hh
build / BuildManager.cc	id / SequenceMapping.hh
build / BuildManager.cc	conformation / util.hh
build / BuildManager.cc	pose / variant_util.hh
build / BuildManager.cc	chemical / VariantType.hh
build / BuildManager.hh	kinematics / MoveMap.fwd.hh
build / BuildManager.hh	pose / Pose.fwd.hh
build / BuildManager.hh	id / SequenceMapping.fwd.hh
build / BuildManager.hh	types.hh
methods / chainbreak_eval.cc	energy_methods / ChainbreakEnergy.hh
methods / chainbreak_eval.cc	scoring / EnergyMap.hh
methods / chainbreak_eval.cc	kinematics / FoldTree.hh
methods / chainbreak_eval.cc	energy_methods / LinearChainbreakEnergy.hh
methods / chainbreak_eval.cc	kinematics / MoveMap.hh
methods / chainbreak_eval.cc	pose / Pose.hh
methods / chainbreak_eval.cc	scoring / ScoreFunction.hh
methods / chainbreak_eval.cc	scoring / ScoreType.hh
methods / chainbreak_eval.hh	pose / Pose.fwd.hh
methods / chainbreak_eval.hh	types.hh
build / ConnectRight.cc	id / AtomID.hh
build / ConnectRight.cc	conformation / Conformation.hh
build / ConnectRight.cc	kinematics / FoldTree.hh
build / ConnectRight.cc	conformation / signals / LengthEvent.hh
build / ConnectRight.cc	kinematics / MoveMap.hh
build / ConnectRight.cc	pose / PDBInfo.hh
build / ConnectRight.cc	pose / util.hh
build / ConnectRight.hh	conformation / Conformation.fwd.hh
build / ConnectRight.hh	conformation / signals / LengthEvent.fwd.hh
build / ConnectRight.hh	id / NamedStubID.hh
build / ConnectRight.hh	pose / Pose.hh
build / ConnectRight.hh	kinematics / RT.hh
methods / fold_tree_functions.cc	conformation / Conformation.hh
methods / fold_tree_functions.cc	kinematics / Edge.hh
methods / fold_tree_functions.cc	kinematics / FoldTree.hh
methods / fold_tree_functions.cc	kinematics / MoveMap.hh
methods / fold_tree_functions.cc	pose / Pose.hh
methods / fold_tree_functions.cc	conformation / Residue.hh
methods / fold_tree_functions.cc	types.hh
methods / fold_tree_functions.cc	pose / variant_util.hh
methods / fold_tree_functions.cc	chemical / VariantType.hh
methods / fold_tree_functions.hh	kinematics / Edge.hh
methods / fold_tree_functions.hh	kinematics / FoldTree.hh
methods / fold_tree_functions.hh	kinematics / MoveMap.fwd.hh
methods / fold_tree_functions.hh	pose / Pose.fwd.hh
methods / fold_tree_functions.hh	types.hh
methods / fragment_functions.cc	fragment / ConstantLengthFragSet.hh
methods / fragment_functions.cc	fragment / FrameIterator.hh
methods / fragment_functions.cc	fragment / FrameIteratorWorker_.hh
methods / fragment_functions.hh	fragment / ConstantLengthFragSet.fwd.hh
methods / fragment_functions.hh	fragment / FrameIterator.fwd.hh
methods / fragment_functions.hh	types.hh
build / GrowLeft.cc	pose / annotated_sequence.hh
build / GrowLeft.cc	conformation / Conformation.hh
build / GrowLeft.cc	conformation / signals / LengthEvent.hh
build / GrowLeft.cc	kinematics / MoveMap.hh
build / GrowLeft.cc	pose / Pose.hh
build / GrowLeft.cc	chemical / ResidueType.hh
build / GrowLeft.hh	conformation / signals / LengthEvent.fwd.hh
build / GrowLeft.hh	pose / Pose.fwd.hh
build / GrowRight.cc	pose / annotated_sequence.hh
build / GrowRight.cc	conformation / Conformation.hh
build / GrowRight.cc	conformation / signals / LengthEvent.hh
build / GrowRight.cc	kinematics / MoveMap.hh
build / GrowRight.cc	pose / Pose.hh
build / GrowRight.cc	chemical / ResidueType.hh
build / GrowRight.hh	conformation / signals / LengthEvent.fwd.hh
build / GrowRight.hh	pose / Pose.fwd.hh
build / Interval.hh	types.hh
constraints / InverseRotamersRCG.cc	scoring / constraints / AmbiguousConstraint.hh
constraints / InverseRotamersRCG.cc	scoring / constraints / BoundConstraint.hh
constraints / InverseRotamersRCG.cc	pose / Pose.hh
constraints / InverseRotamersRCG.cc	conformation / Residue.hh
constraints / InverseRotamersRCG.cc	id / SequenceMapping.hh
constraints / InverseRotamersRCG.hh	scoring / func / Func.fwd.hh
constraints / InverseRotamersRCG.hh	pose / Pose.fwd.hh
constraints / InverseRotamersRCG.hh	conformation / Residue.fwd.hh
constraints / InverseRotamersRCG.hh	types.hh
constraints / InvrotTreeRCG.cc	chemical / ChemicalManager.hh
constraints / InvrotTreeRCG.cc	scoring / constraints / Constraint.hh
constraints / InvrotTreeRCG.cc	pose / Pose.hh
constraints / InvrotTreeRCG.hh	pose / Pose.fwd.hh
constraints / InvrotTreeRCG.hh	types.hh
constraints / NtoCConstraintGenerator.cc	pose / Pose.hh
constraints / NtoCConstraintGenerator.hh	pose / Pose.fwd.hh
constraints / NtoCConstraintGenerator.hh	types.hh
methods / pose_mod.cc	conformation / Conformation.hh
methods / pose_mod.cc	id / DOF_ID.hh
methods / pose_mod.cc	scoring / Energies.hh
methods / pose_mod.cc	kinematics / FoldTree.hh
methods / pose_mod.cc	pack / task / operation / OptCysHG.hh
methods / pose_mod.cc	pack / pack_rotamers.hh
methods / pose_mod.cc	pack / task / PackerTask.hh
methods / pose_mod.cc	scoring / ScoreFunction.hh
methods / pose_mod.cc	scoring / ScoreFunctionFactory.hh
methods / pose_mod.cc	pack / task / TaskFactory.hh
methods / pose_mod.cc	chemical / VariantType.hh
methods / pose_mod.hh	id / AtomID.fwd.hh
methods / pose_mod.hh	conformation / Conformation.hh
methods / pose_mod.hh	pose / Pose.fwd.hh
methods / pose_mod.hh	conformation / Residue.hh
methods / pose_mod.hh	conformation / ResidueFactory.hh
methods / pose_mod.hh	types.hh
methods / pose_mod.hh	pose / variant_util.hh
build / RelativeConnectRight.cc	pose / Pose.hh
build / RelativeSequencePosition.hh	types.hh
remodel / RemodelAccumulator.cc	import_pose / import_pose.hh
remodel / RemodelAccumulator.cc	scoring / constraints / ResidueTypeLinkingConstraint.hh
remodel / RemodelAccumulator.cc	scoring / ScoreFunctionFactory.hh
remodel / RemodelAccumulator.hh	scoring / ScoreFunction.fwd.hh
remodel / RemodelAccumulator.hh	scoring / ScoreFunctionFactory.hh
remodel / RemodelConstraintGenerator.cc	scoring / constraints / Constraint.hh
remodel / RemodelConstraintGenerator.cc	pose / Pose.hh
remodel / RemodelConstraintGenerator.cc	id / SequenceMapping.hh
remodel / RemodelConstraintGenerator.hh	scoring / constraints / Constraint.fwd.hh
remodel / RemodelConstraintGenerator.hh	pose / Pose.fwd.hh
remodel / RemodelConstraintGenerator.hh	id / SequenceMapping.fwd.hh
remodel / RemodelData.cc	chemical / ChemicalManager.hh
remodel / RemodelData.cc	scoring / dssp / Dssp.hh
remodel / RemodelData.cc	import_pose / import_pose.hh
remodel / RemodelData.cc	pose / PDBInfo.hh
remodel / RemodelData.cc	pack / task / ResfileReader.hh
remodel / RemodelData.cc	chemical / ResidueType.hh
remodel / RemodelData.cc	chemical / ResidueTypeSet.hh
remodel / RemodelData.hh	chemical / AA.hh
remodel / RemodelData.hh	kinematics / MoveMap.hh
remodel / RemodelData.hh	pose / Pose.hh
remodel / RemodelDesignMover.cc	pose / metrics / CalculatorFactory.hh
remodel / RemodelDesignMover.cc	chemical / ChemicalManager.hh
remodel / RemodelDesignMover.cc	scoring / constraints / ConstraintSet.hh
remodel / RemodelDesignMover.cc	util / disulfide_util.hh
remodel / RemodelDesignMover.cc	scoring / disulfides / DisulfideMatchingPotential.hh
remodel / RemodelDesignMover.cc	kinematics / MoveMap.hh
remodel / RemodelDesignMover.cc	pack / pack_rotamers.hh
remodel / RemodelDesignMover.cc	pose / PDBInfo.hh
remodel / RemodelDesignMover.cc	pack / task / ResfileReader.hh
remodel / RemodelDesignMover.cc	conformation / Residue.hh
remodel / RemodelDesignMover.cc	pack / rotamer_set / RotamerLinks.hh
remodel / RemodelDesignMover.cc	scoring / ScoreFunction.hh
remodel / RemodelDesignMover.cc	pack / task / TaskFactory.hh
remodel / RemodelDesignMover.cc	types.hh
remodel / RemodelDesignMover.cc	pose / symmetry / util.hh
remodel / RemodelDesignMover.cc	conformation / util.hh
remodel / RemodelDesignMover.hh	kinematics / MoveMap.hh
remodel / RemodelDesignMover.hh	pose / Pose.fwd.hh
remodel / RemodelDesignMover.hh	scoring / ScoreFunction.fwd.hh
remodel / RemodelEnzdesCstModule.cc	chemical / ChemicalManager.hh
remodel / RemodelEnzdesCstModule.cc	scoring / constraints / Constraint.fwd.hh
remodel / RemodelEnzdesCstModule.cc	chemical / ResidueType.hh
remodel / RemodelEnzdesCstModule.cc	chemical / ResidueTypeSet.hh
remodel / RemodelEnzdesCstModule.cc	scoring / ScoreFunction.hh
remodel / RemodelEnzdesCstModule.cc	scoring / ScoreFunctionFactory.hh
remodel / RemodelEnzdesCstModule.hh	pose / Pose.fwd.hh
remodel / RemodelEnzdesCstModule.hh	scoring / ScoreFunction.fwd.hh
remodel / RemodelGlobalFrame.cc	id / AtomID.hh
remodel / RemodelGlobalFrame.cc	pose / metrics / CalculatorFactory.hh
remodel / RemodelGlobalFrame.cc	chemical / ChemicalManager.hh
remodel / RemodelGlobalFrame.cc	scoring / constraints / ConstraintSet.hh
remodel / RemodelGlobalFrame.cc	util / disulfide_util.hh
remodel / RemodelGlobalFrame.cc	scoring / disulfides / DisulfideMatchingPotential.hh
remodel / RemodelGlobalFrame.cc	kinematics / MoveMap.hh
remodel / RemodelGlobalFrame.cc	pack / pack_rotamers.hh
remodel / RemodelGlobalFrame.cc	pose / PDBInfo.hh
remodel / RemodelGlobalFrame.cc	io / Remarks.hh
remodel / RemodelGlobalFrame.cc	pack / task / ResfileReader.hh
remodel / RemodelGlobalFrame.cc	conformation / Residue.hh
remodel / RemodelGlobalFrame.cc	chemical / ResidueTypeSet.hh
remodel / RemodelGlobalFrame.cc	pack / rotamer_set / RotamerLinks.hh
remodel / RemodelGlobalFrame.cc	scoring / ScoreFunction.hh
remodel / RemodelGlobalFrame.cc	io / StructFileRep.hh
remodel / RemodelGlobalFrame.cc	pack / task / TaskFactory.hh
remodel / RemodelGlobalFrame.cc	io / util.hh
remodel / RemodelGlobalFrame.cc	pose / util.hh
remodel / RemodelGlobalFrame.cc	pose / symmetry / util.hh
remodel / RemodelGlobalFrame.cc	conformation / util.hh
remodel / RemodelGlobalFrame.hh	scoring / constraints / ConstraintSet.fwd.hh
remodel / RemodelGlobalFrame.hh	kinematics / MoveMap.hh
remodel / RemodelGlobalFrame.hh	pose / Pose.fwd.hh
remodel / RemodelGlobalFrame.hh	scoring / ScoreFunction.fwd.hh
remodel / RemodelLigandHandler.cc	id / AtomID.hh
remodel / RemodelLigandHandler.cc	pose / metrics / CalculatorFactory.hh
remodel / RemodelLigandHandler.cc	chemical / ChemicalManager.hh
remodel / RemodelLigandHandler.cc	scoring / constraints / ConstraintSet.hh
remodel / RemodelLigandHandler.cc	util / disulfide_util.hh
remodel / RemodelLigandHandler.cc	scoring / disulfides / DisulfideMatchingPotential.hh
remodel / RemodelLigandHandler.cc	kinematics / FoldTree.hh
remodel / RemodelLigandHandler.cc	kinematics / MoveMap.hh
remodel / RemodelLigandHandler.cc	pack / pack_rotamers.hh
remodel / RemodelLigandHandler.cc	pose / PDBInfo.hh
remodel / RemodelLigandHandler.cc	io / Remarks.hh
remodel / RemodelLigandHandler.cc	pack / task / ResfileReader.hh
remodel / RemodelLigandHandler.cc	conformation / Residue.hh
remodel / RemodelLigandHandler.cc	chemical / ResidueTypeSet.hh
remodel / RemodelLigandHandler.cc	pack / rotamer_set / RotamerLinks.hh
remodel / RemodelLigandHandler.cc	scoring / ScoreFunction.hh
remodel / RemodelLigandHandler.cc	scoring / ScoreFunctionFactory.hh
remodel / RemodelLigandHandler.cc	pack / task / TaskFactory.hh
remodel / RemodelLigandHandler.cc	pose / util.hh
remodel / RemodelLigandHandler.cc	pose / symmetry / util.hh
remodel / RemodelLigandHandler.cc	conformation / util.hh
remodel / RemodelLigandHandler.hh	scoring / constraints / ConstraintSet.fwd.hh
remodel / RemodelLigandHandler.hh	kinematics / MoveMap.hh
remodel / RemodelLigandHandler.hh	pose / Pose.fwd.hh
remodel / RemodelLigandHandler.hh	scoring / ScoreFunction.fwd.hh
remodel / RemodelLoopMover.cc	sequence / ABEGOManager.hh
remodel / RemodelLoopMover.cc	chemical / AtomType.hh
remodel / RemodelLoopMover.cc	pose / datacache / CacheableDataType.hh
remodel / RemodelLoopMover.cc	chemical / ChemicalManager.hh
remodel / RemodelLoopMover.cc	conformation / Conformation.hh
remodel / RemodelLoopMover.cc	fragment / ConstantLengthFragSet.fwd.hh
remodel / RemodelLoopMover.cc	fragment / ConstantLengthFragSet.hh
remodel / RemodelLoopMover.cc	scoring / constraints / ConstraintSet.hh
remodel / RemodelLoopMover.cc	scoring / dssp / Dssp.hh
remodel / RemodelLoopMover.cc	scoring / Energies.hh
remodel / RemodelLoopMover.cc	kinematics / FoldTree.hh
remodel / RemodelLoopMover.cc	fragment / FragData.hh
remodel / RemodelLoopMover.cc	fragment / FragSet.hh
remodel / RemodelLoopMover.cc	fragment / Frame.fwd.hh
remodel / RemodelLoopMover.cc	fragment / Frame.hh
remodel / RemodelLoopMover.cc	fragment / FrameIterator.hh
remodel / RemodelLoopMover.cc	import_pose / import_pose.hh
remodel / RemodelLoopMover.cc	pose / PDBInfo.hh
remodel / RemodelLoopMover.cc	pose / Pose.hh
remodel / RemodelLoopMover.cc	conformation / Residue.hh
remodel / RemodelLoopMover.cc	conformation / ResidueFactory.hh
remodel / RemodelLoopMover.cc	chemical / ResidueType.hh
remodel / RemodelLoopMover.cc	chemical / ResidueTypeFinder.hh
remodel / RemodelLoopMover.cc	scoring / constraints / ResidueTypeLinkingConstraint.hh
remodel / RemodelLoopMover.cc	chemical / ResidueTypeSet.hh
remodel / RemodelLoopMover.cc	scoring / ScoreFunction.hh
remodel / RemodelLoopMover.cc	scoring / ScoreFunctionFactory.hh
remodel / RemodelLoopMover.cc	scoring / ScoreType.hh
remodel / RemodelLoopMover.cc	scoring / ScoringManager.hh
remodel / RemodelLoopMover.cc	util / SwitchResidueTypeSet.hh
remodel / RemodelLoopMover.cc	conformation / symmetry / SymmetricConformation.hh
remodel / RemodelLoopMover.cc	conformation / symmetry / SymmetryInfo.fwd.hh
remodel / RemodelLoopMover.cc	conformation / symmetry / SymmetryInfo.hh
remodel / RemodelLoopMover.cc	id / TorsionID.hh
remodel / RemodelLoopMover.cc	io / util.hh
remodel / RemodelLoopMover.cc	chemical / util.hh
remodel / RemodelLoopMover.cc	pose / symmetry / util.hh
remodel / RemodelLoopMover.cc	pose / variant_util.hh
remodel / RemodelLoopMover.cc	chemical / VariantType.hh
remodel / RemodelLoopMover.hh	fragment / FragSet.fwd.hh
remodel / RemodelLoopMover.hh	kinematics / MoveMap.hh
remodel / RemodelLoopMover.hh	pose / Pose.fwd.hh
remodel / RemodelLoopMover.hh	pose / Pose.hh
remodel / RemodelLoopMover.hh	scoring / ScoreFunction.fwd.hh
remodel / RemodelMover.cc	chemical / AA.hh
remodel / RemodelMover.cc	pose / annotated_sequence.hh
remodel / RemodelMover.cc	pose / datacache / CacheableDataType.hh
remodel / RemodelMover.cc	pose / datacache / CacheableObserverType.hh
remodel / RemodelMover.cc	pose / metrics / CalculatorFactory.hh
remodel / RemodelMover.cc	pose / chains_util.hh
remodel / RemodelMover.cc	chemical / ChemicalManager.hh
remodel / RemodelMover.cc	scoring / constraints / ConstraintSet.hh
remodel / RemodelMover.cc	scoring / dssp / Dssp.hh
remodel / RemodelMover.cc	scoring / Energies.hh
remodel / RemodelMover.cc	pose / extra_pose_info_util.hh
remodel / RemodelMover.cc	kinematics / FoldTree.hh
remodel / RemodelMover.cc	kinematics / MoveMap.hh
remodel / RemodelMover.cc	pack / task / operation / NoRepackDisulfides.hh
remodel / RemodelMover.cc	pose / datacache / ObserverCache.hh
remodel / RemodelMover.cc	pack / task / operation / OperateOnCertainResidues.hh
remodel / RemodelMover.cc	pack / task / PackerTask.hh
remodel / RemodelMover.cc	pose / PDBInfo.hh
remodel / RemodelMover.cc	pose / Pose.hh
remodel / RemodelMover.cc	io / Remarks.hh
remodel / RemodelMover.cc	conformation / Residue.hh
remodel / RemodelMover.cc	chemical / ResidueTypeSet.hh
remodel / RemodelMover.cc	pack / task / operation / ResLvlTaskOperations.hh
remodel / RemodelMover.cc	scoring / rms_util.hh
remodel / RemodelMover.cc	scoring / ScoreFunctionFactory.hh
remodel / RemodelMover.cc	util / SwitchResidueTypeSet.hh
remodel / RemodelMover.cc	conformation / symmetry / SymmetryInfo.hh
remodel / RemodelMover.cc	pack / task / TaskFactory.hh
remodel / RemodelMover.cc	pack / task / operation / TaskOperations.hh
remodel / RemodelMover.cc	conformation / symmetry / util.hh
remodel / RemodelMover.cc	pose / symmetry / util.hh
remodel / RemodelMover.cc	pose / variant_util.hh
remodel / RemodelMover.hh	pose / Pose.fwd.hh
remodel / RemodelMover.hh	scoring / ScoreFunction.fwd.hh
remodel / RemodelMover.hh	pack / task / TaskFactory.fwd.hh
remodel / RemodelMover.hh	types.hh
remodel / RemodelRotamerLinks.cc	pack / task / PackerTask.hh
remodel / RemodelRotamerLinks.cc	pose / PDBInfo.hh
remodel / RemodelRotamerLinks.cc	pose / Pose.hh
remodel / RemodelRotamerLinks.cc	chemical / ResidueType.hh
remodel / RemodelRotamerLinks.cc	pack / rotamer_set / RotamerLinks.hh
remodel / RemodelRotamerLinks.cc	conformation / symmetry / SymmetryInfo.hh
remodel / RemodelRotamerLinks.cc	pack / task / operation / task_op_schemas.hh
remodel / RemodelRotamerLinks.cc	pose / symmetry / util.hh
remodel / RemodelRotamerLinks.hh	pack / task / operation / TaskOperation.hh
remodel / RemodelRotamerLinksCreator.hh	pack / task / operation / TaskOperationCreator.hh
remodel / RemodelWorkingSet.cc	pose / annotated_sequence.hh
remodel / RemodelWorkingSet.cc	chemical / ChemicalManager.hh
remodel / RemodelWorkingSet.cc	fragment / ConstantLengthFragSet.fwd.hh
remodel / RemodelWorkingSet.cc	kinematics / FoldTree.hh
remodel / RemodelWorkingSet.cc	fragment / Frame.fwd.hh
remodel / RemodelWorkingSet.cc	kinematics / Jump.hh
remodel / RemodelWorkingSet.cc	fragment / OrderedFragSet.fwd.hh
remodel / RemodelWorkingSet.cc	pose / Pose.hh
remodel / RemodelWorkingSet.cc	pack / task / ResfileReader.hh
remodel / RemodelWorkingSet.cc	conformation / Residue.hh
remodel / RemodelWorkingSet.cc	chemical / ResidueType.hh
remodel / RemodelWorkingSet.cc	chemical / ResidueTypeSet.hh
remodel / RemodelWorkingSet.cc	pack / task / TaskFactory.hh
remodel / RemodelWorkingSet.cc	pose / util.hh
remodel / RemodelWorkingSet.hh	pack / task / PackerTask.hh
remodel / RemodelWorkingSet.hh	pose / Pose.hh
constraints / RemoveRemodelCsts.cc	scoring / constraints / Constraint.hh
constraints / RemoveRemodelCsts.cc	scoring / constraints / ConstraintSet.hh
constraints / RemoveRemodelCsts.cc	pose / Pose.hh
constraints / RemoveRemodelCsts.hh	pose / Pose.fwd.hh
constraints / RemoveRemodelCsts.hh	types.hh
remodel / ResidueVicinityRCG.cc	scoring / constraints / AmbiguousConstraint.hh
remodel / ResidueVicinityRCG.cc	scoring / constraints / AngleConstraint.hh
remodel / ResidueVicinityRCG.cc	id / AtomID.hh
remodel / ResidueVicinityRCG.cc	scoring / constraints / AtomPairConstraint.hh
remodel / ResidueVicinityRCG.cc	scoring / constraints / DihedralConstraint.hh
remodel / ResidueVicinityRCG.cc	pose / Pose.hh
remodel / ResidueVicinityRCG.cc	id / SequenceMapping.hh
remodel / ResidueVicinityRCG.hh	scoring / constraints / Constraint.fwd.hh
remodel / ResidueVicinityRCG.hh	scoring / func / Func.fwd.hh
remodel / ResidueVicinityRCG.hh	pose / Pose.fwd.hh
remodel / ResidueVicinityRCG.hh	types.hh
build / SegmentInsert.cc	pose / annotated_sequence.hh
build / SegmentInsert.cc	id / AtomID.hh
build / SegmentInsert.cc	conformation / Conformation.hh
build / SegmentInsert.cc	kinematics / constants.hh
build / SegmentInsert.cc	conformation / signals / LengthEvent.hh
build / SegmentInsert.cc	kinematics / MoveMap.hh
build / SegmentInsert.cc	pose / PDBInfo.hh
build / SegmentInsert.cc	conformation / Residue.hh
build / SegmentInsert.cc	id / TorsionID.hh
build / SegmentInsert.cc	id / types.hh
build / SegmentInsert.cc	pose / util.hh
build / SegmentInsert.cc	conformation / util.hh
build / SegmentInsert.hh	kinematics / MoveMap.hh
build / SegmentInsert.hh	pose / Pose.hh
build / SegmentRebuild.cc	pose / annotated_sequence.hh
build / SegmentRebuild.cc	conformation / Conformation.hh
build / SegmentRebuild.cc	kinematics / constants.hh
build / SegmentRebuild.cc	kinematics / FoldTree.hh
build / SegmentRebuild.cc	conformation / signals / LengthEvent.hh
build / SegmentRebuild.cc	kinematics / MoveMap.hh
build / SegmentRebuild.cc	pose / PDBInfo.hh
build / SegmentRebuild.cc	pose / Pose.hh
build / SegmentRebuild.cc	conformation / ResidueFactory.hh
build / SegmentRebuild.cc	chemical / ResidueType.hh
build / SegmentRebuild.cc	id / TorsionID.hh
build / SegmentRebuild.cc	conformation / util.hh
build / SegmentRebuild.hh	conformation / signals / LengthEvent.fwd.hh
build / SegmentRebuild.hh	pose / Pose.fwd.hh
build / SegmentSwap.cc	conformation / Conformation.hh
build / SegmentSwap.cc	kinematics / FoldTree.hh
build / SegmentSwap.cc	conformation / signals / LengthEvent.hh
build / SegmentSwap.cc	pose / PDBInfo.hh
build / SegmentSwap.cc	conformation / util.hh
build / SegmentSwap.cc	pose / util.hh
build / SegmentSwap.hh	conformation / signals / LengthEvent.fwd.hh
build / SegmentSwap.hh	kinematics / MoveMap.hh
build / SegmentSwap.hh	pose / Pose.hh
methods / util.cc	chemical / AA.hh
methods / util.cc	scoring / constraints / AtomPairConstraint.hh
methods / util.cc	conformation / Conformation.hh
methods / util.cc	scoring / constraints / ConstraintSet.hh
methods / util.cc	scoring / constraints / CoordinateConstraint.hh
methods / util.cc	kinematics / FoldTree.hh
methods / util.cc	scoring / func / HarmonicFunc.hh
methods / util.cc	kinematics / MoveMap.hh
methods / util.cc	pack / task / operation / NoRepackDisulfides.hh
methods / util.cc	pack / task / PackerTask.hh
methods / util.cc	pose / PDBInfo.hh
methods / util.cc	pose / PDBPoseMap.hh
methods / util.cc	pose / Pose.hh
methods / util.cc	pack / task / ResfileReader.hh
methods / util.cc	conformation / Residue.hh
methods / util.cc	scoring / sasa.hh
methods / util.cc	conformation / symmetry / SymmetryInfo.hh
methods / util.cc	pack / task / TaskFactory.hh
methods / util.cc	pack / task / operation / TaskOperations.hh
methods / util.cc	types.hh
methods / util.cc	id / types.hh
methods / util.cc	pose / util.hh
methods / util.cc	conformation / symmetry / util.hh
methods / util.cc	pose / symmetry / util.hh
methods / util.cc	chemical / VariantType.hh
methods / util.hh	kinematics / FoldTree.fwd.hh
methods / util.hh	pack / task / PackerTask.fwd.hh
methods / util.hh	pose / Pose.fwd.hh
methods / util.hh	pack / task / TaskFactory.fwd.hh
methods / util.hh	types.hh
components / VarLengthBuild.cc	pose / datacache / CacheableObserverType.hh
components / VarLengthBuild.cc	chemical / ChemicalManager.hh
components / VarLengthBuild.cc	fragment / ConstantLengthFragSet.hh
components / VarLengthBuild.cc	scoring / Energies.hh
components / VarLengthBuild.cc	fragment / picking_old / FragmentLibraryManager.hh
components / VarLengthBuild.cc	fragment / Frame.hh
components / VarLengthBuild.cc	fragment / FrameIterator.hh
components / VarLengthBuild.cc	fragment / FrameIteratorWorker_.hh
components / VarLengthBuild.cc	fragment / IndependentBBTorsionSRFD.hh
components / VarLengthBuild.cc	kinematics / MoveMap.hh
components / VarLengthBuild.cc	pose / datacache / ObserverCache.hh
components / VarLengthBuild.cc	fragment / OrderedFragSet.hh
components / VarLengthBuild.cc	pose / PDBInfo.hh
components / VarLengthBuild.cc	pose / Pose.hh
components / VarLengthBuild.cc	chemical / ResidueType.hh
components / VarLengthBuild.cc	chemical / ResidueTypeFinder.hh
components / VarLengthBuild.cc	chemical / ResidueTypeSet.hh
components / VarLengthBuild.cc	scoring / ScoreFunction.hh
components / VarLengthBuild.cc	scoring / ScoreFunctionFactory.hh
components / VarLengthBuild.cc	id / SequenceMapping.hh
components / VarLengthBuild.cc	util / SwitchResidueTypeSet.hh
components / VarLengthBuild.cc	fragment / picking_old / vall / util.hh
components / VarLengthBuild.cc	pose / symmetry / util.hh
components / VarLengthBuild.cc	chemical / VariantType.hh
components / VarLengthBuild.hh	fragment / ConstantLengthFragSet.fwd.hh
components / VarLengthBuild.hh	fragment / FrameList.fwd.hh
components / VarLengthBuild.hh	kinematics / MoveMap.fwd.hh
components / VarLengthBuild.hh	fragment / OrderedFragSet.fwd.hh
components / VarLengthBuild.hh	pose / Pose.fwd.hh
components / VarLengthBuild.hh	scoring / ScoreFunction.fwd.hh