jd3 → core Relation

File in src/protocols/jd3	Includes file in src/core
chunk_library_inputters / chunk_library_inputter_schemas.hh	types.hh
chunk_library / ChunkLibraryInnerLarvalJob.hh	types.hh
chunk_library_inputters / ChunkLibraryInputSource.cc	pose / Pose.fwd.hh
chunk_library_inputters / ChunkLibraryInputSource.fwd.hh	pose / Pose.fwd.hh
chunk_library_inputters / ChunkLibraryInputSource.hh	pose / Pose.fwd.hh
chunk_library_inputters / ChunkLibraryInputSource.hh	types.hh
chunk_library_inputters / ChunkLibraryInputter.hh	pose / Pose.fwd.hh
chunk_library_inputters / ChunkLibraryInputterFactory.cc	types.hh
chunk_library / ChunkLibraryJobQueen.cc	import_pose / import_pose_options.hh
chunk_library / ChunkLibraryJobQueen.cc	pose / Pose.hh
chunk_library / ChunkLibraryJobQueen.hh	import_pose / import_pose_options.fwd.hh
chunk_library / ChunkLibraryJobQueen.hh	pose / Pose.fwd.hh
CompletedJobOutput.fwd.hh	types.hh
deallocation / DeallocationMessage.hh	types.hh
pose_outputters / DeNovoSilentFilePoseOutputter.cc	io / pdb / pdb_writer.hh
pose_outputters / DeNovoSilentFilePoseOutputter.cc	pose / Pose.hh
pose_outputters / DeNovoSilentFilePoseOutputter.cc	io / silent / SilentFileData.hh
pose_outputters / DeNovoSilentFilePoseOutputter.cc	io / silent / SilentFileOptions.hh
pose_outputters / DeNovoSilentFilePoseOutputter.cc	io / silent / SilentStruct.hh
pose_outputters / DeNovoSilentFilePoseOutputter.cc	io / silent / SilentStructFactory.hh
pose_outputters / DeNovoSilentFilePoseOutputter.cc	io / StructFileRepOptions.hh
pose_outputters / DeNovoSilentFilePoseOutputter.cc	pose / rna / util.hh
pose_outputters / DeNovoSilentFilePoseOutputter.hh	pose / Pose.fwd.hh
pose_outputters / DeNovoSilentFilePoseOutputter.hh	io / silent / SilentFileOptions.fwd.hh
pose_outputters / DeNovoSilentFilePoseOutputter.hh	io / silent / SilentStruct.fwd.hh
pose_outputters / DeNovoSilentFilePoseOutputter.hh	types.hh
job_summaries / EnergyJobSummary.cc	scoring / Energies.hh
job_summaries / EnergyJobSummary.cc	pose / Pose.hh
job_summaries / EnergyJobSummary.hh	pose / Pose.fwd.hh
full_model_inputters / full_model_inputter_schemas.hh	types.hh
full_model / FullModelInnerLarvalJob.hh	types.hh
full_model_inputters / FullModelInputSource.cc	pose / Pose.fwd.hh
full_model_inputters / FullModelInputSource.hh	pose / Pose.fwd.hh
full_model_inputters / FullModelInputSource.hh	types.hh
full_model_inputters / FullModelInputter.hh	pose / Pose.fwd.hh
full_model_inputters / FullModelInputterFactory.cc	types.hh
full_model / FullModelJobQueen.cc	import_pose / import_pose_options.hh
full_model / FullModelJobQueen.cc	pose / Pose.hh
full_model / FullModelJobQueen.hh	import_pose / import_pose_options.fwd.hh
full_model / FullModelJobQueen.hh	pose / Pose.fwd.hh
InnerLarvalJob.hh	types.hh
deallocation / InputPoseDeallocationMessage.hh	types.hh
InputSource.cc	pose / Pose.fwd.hh
InputSource.hh	pose / Pose.fwd.hh
InputSource.hh	types.hh
Job.hh	types.hh
JobDigraph.hh	types.hh
JobDistributor.hh	types.hh
job_distributors / JobExtractor.hh	types.hh
JobGenealogist.hh	types.hh
JobOutputIndex.hh	types.hh
JobOutputWritter.hh	types.hh
JobQueen.hh	pose / Pose.fwd.hh
JobQueen.hh	types.hh
JobResult.hh	types.hh
JobSummary.hh	types.hh
JobTracker.hh	types.hh
LarvalJob.hh	types.hh
pose_outputters / mmTFPoseOutputSpecification.cc	io / StructFileRepOptions.hh
pose_outputters / mmTFPoseOutputSpecification.hh	io / StructFileRepOptions.fwd.hh
pose_outputters / mmTFPoseOutputter.cc	io / mmtf / mmtf_writer.hh
pose_outputters / mmTFPoseOutputter.cc	pose / Pose.hh
pose_outputters / mmTFPoseOutputter.cc	io / StructFileRepOptions.hh
pose_outputters / mmTFPoseOutputter.hh	pose / Pose.fwd.hh
chunk_library / MoverAndChunkLibraryJob.cc	scoring / Energies.hh
chunk_library / MoverAndChunkLibraryJob.cc	pose / Pose.hh
chunk_library / MoverAndChunkLibraryJob.cc	types.hh
chunk_library / MoverAndChunkLibraryJob.hh	pose / Pose.fwd.hh
jobs / MoverJob.cc	pose / Pose.hh
jobs / MoverJob.cc	simple_metrics / SimpleMetric.hh
jobs / MoverJob.hh	pose / Pose.fwd.hh
jobs / MoverJob.hh	scoring / ScoreFunction.fwd.hh
jobs / MoverJob.hh	simple_metrics / SimpleMetric.fwd.hh
dag_node_managers / NodeManagerStorageMatrix.hh	types.hh
chunk_library_inputters / PDBChunkLibraryInputter.cc	chemical / ChemicalManager.hh
chunk_library_inputters / PDBChunkLibraryInputter.cc	import_pose / import_pose.hh
chunk_library_inputters / PDBChunkLibraryInputter.cc	import_pose / import_pose_options.hh
chunk_library_inputters / PDBChunkLibraryInputter.cc	pose / Pose.hh
chunk_library_inputters / PDBChunkLibraryInputter.cc	import_pose / RNA_DeNovoSetup.hh
chunk_library_inputters / PDBChunkLibraryInputter.hh	pose / Pose.fwd.hh
full_model_inputters / PDBFullModelInputter.cc	chemical / ChemicalManager.hh
full_model_inputters / PDBFullModelInputter.cc	import_pose / import_pose.hh
full_model_inputters / PDBFullModelInputter.cc	import_pose / import_pose_options.hh
full_model_inputters / PDBFullModelInputter.cc	pose / Pose.hh
full_model_inputters / PDBFullModelInputter.hh	pose / Pose.fwd.hh
pose_inputters / PDBPoseInputter.cc	import_pose / import_pose.hh
pose_inputters / PDBPoseInputter.cc	import_pose / import_pose_options.hh
pose_inputters / PDBPoseInputter.cc	pose / Pose.hh
pose_inputters / PDBPoseInputter.hh	pose / Pose.fwd.hh
pose_outputters / PDBPoseOutputSpecification.cc	io / StructFileRepOptions.hh
pose_outputters / PDBPoseOutputSpecification.hh	io / StructFileRepOptions.fwd.hh
pose_outputters / PDBPoseOutputter.cc	io / pdb / pdb_writer.hh
pose_outputters / PDBPoseOutputter.cc	pose / Pose.hh
pose_outputters / PDBPoseOutputter.cc	io / StructFileRepOptions.hh
pose_outputters / PDBPoseOutputter.hh	pose / Pose.fwd.hh
pose_inputters / pose_inputter_schemas.hh	types.hh
pose_outputters / pose_outputter_schemas.hh	types.hh
pose_inputters / PoseInputSource.cc	pose / Pose.fwd.hh
pose_inputters / PoseInputSource.hh	pose / Pose.fwd.hh
pose_inputters / PoseInputSource.hh	types.hh
pose_inputters / PoseInputter.hh	pose / Pose.fwd.hh
pose_inputters / PoseInputterFactory.cc	types.hh
job_results / PoseJobResult.cc	pose / Pose.hh
job_results / PoseJobResult.hh	pose / Pose.fwd.hh
pose_outputters / PoseOutputter.hh	pose / Pose.fwd.hh
pose_outputters / PoseOutputter.hh	types.hh
standard / PreliminaryLarvalJobTracker.hh	types.hh
pose_outputters / ScoreFileOutputSpecification.cc	io / StructFileRepOptions.fwd.hh
pose_outputters / ScoreFileOutputter.cc	io / raw_data / ScoreFileData.hh
pose_outputters / ScoreFileOutputter.cc	io / raw_data / ScoreMap.hh
pose_outputters / ScoreFileOutputter.cc	types.hh
pose_outputters / ScoreFileOutputter.hh	pose / Pose.fwd.hh
pose_outputters / SecondaryPoseOutputter.hh	pose / Pose.fwd.hh
full_model_inputters / SilentFileFullModelInputter.cc	chemical / ChemicalManager.hh
full_model_inputters / SilentFileFullModelInputter.cc	import_pose / import_pose.hh
full_model_inputters / SilentFileFullModelInputter.cc	pose / Pose.hh
full_model_inputters / SilentFileFullModelInputter.cc	io / silent / SilentFileData.hh
full_model_inputters / SilentFileFullModelInputter.cc	io / silent / SilentFileOptions.hh
full_model_inputters / SilentFileFullModelInputter.cc	pose / symmetry / util.hh
full_model_inputters / SilentFileFullModelInputter.cc	pose / util.hh
full_model_inputters / SilentFileFullModelInputter.hh	pose / Pose.fwd.hh
full_model_inputters / SilentFileFullModelInputter.hh	io / silent / SilentFileData.fwd.hh
full_model_inputters / SilentFileFullModelInputter.hh	io / silent / SilentFileOptions.fwd.hh
full_model_inputters / SilentFileFullModelInputter.hh	io / silent / SilentStruct.fwd.hh
pose_inputters / SilentFilePoseInputter.cc	pose / Pose.hh
pose_inputters / SilentFilePoseInputter.cc	io / silent / SilentFileData.hh
pose_inputters / SilentFilePoseInputter.cc	io / silent / SilentFileOptions.hh
pose_inputters / SilentFilePoseInputter.cc	pose / symmetry / util.hh
pose_inputters / SilentFilePoseInputter.cc	pose / util.hh
pose_inputters / SilentFilePoseInputter.hh	pose / Pose.fwd.hh
pose_inputters / SilentFilePoseInputter.hh	io / silent / SilentFileData.fwd.hh
pose_inputters / SilentFilePoseInputter.hh	io / silent / SilentFileOptions.fwd.hh
pose_inputters / SilentFilePoseInputter.hh	io / silent / SilentStruct.fwd.hh
pose_outputters / SilentFilePoseOutputSpecification.cc	io / silent / SilentFileOptions.hh
pose_outputters / SilentFilePoseOutputSpecification.hh	io / silent / SilentFileOptions.fwd.hh
pose_outputters / SilentFilePoseOutputter.cc	pose / full_model_info / FullModelInfo.hh
pose_outputters / SilentFilePoseOutputter.cc	pose / Pose.hh
pose_outputters / SilentFilePoseOutputter.cc	io / silent / SilentFileData.hh
pose_outputters / SilentFilePoseOutputter.cc	io / silent / SilentFileOptions.hh
pose_outputters / SilentFilePoseOutputter.cc	io / silent / SilentStruct.hh
pose_outputters / SilentFilePoseOutputter.cc	io / silent / SilentStructFactory.hh
pose_outputters / SilentFilePoseOutputter.cc	io / StructFileRepOptions.hh
pose_outputters / SilentFilePoseOutputter.cc	pose / full_model_info / util.hh
pose_outputters / SilentFilePoseOutputter.hh	pose / Pose.fwd.hh
pose_outputters / SilentFilePoseOutputter.hh	io / silent / SilentFileOptions.fwd.hh
pose_outputters / SilentFilePoseOutputter.hh	io / silent / SilentStruct.fwd.hh
pose_outputters / SilentFilePoseOutputter.hh	types.hh
standard / StandardJobQueen.cc	import_pose / import_pose_options.hh
standard / StandardJobQueen.cc	pose / Pose.hh
standard / StandardJobQueen.hh	import_pose / import_pose_options.fwd.hh
standard / StandardJobQueen.hh	pose / Pose.fwd.hh
job_summaries / StandardPoseJobSummary.cc	scoring / Energies.hh
job_summaries / StandardPoseJobSummary.cc	pose / Pose.hh
job_summaries / StandardPoseJobSummary.cc	simple_metrics / SimpleMetric.hh
job_summaries / StandardPoseJobSummary.cc	simple_metrics / SimpleMetricData.hh
job_summaries / StandardPoseJobSummary.cc	simple_metrics / util.hh
job_summaries / StandardPoseJobSummary.hh	pose / Pose.fwd.hh
job_summaries / StandardPoseJobSummary.hh	simple_metrics / SimpleMetric.fwd.hh
job_summaries / StandardPoseJobSummary.hh	simple_metrics / SimpleMetricData.fwd.hh
util.cc	select / residue_selector / util.hh
util.hh	pose / Pose.fwd.hh
util.hh	select / residue_selector / ResidueSelector.fwd.hh
util.hh	types.hh
job_distributors / VanillaJobDistributor.hh	types.hh