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2021.16
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src
protocols
legacy_sewing
legacy_sewing → core Relation
File in src/protocols/legacy_sewing
Includes file in src/core
conformation
/
Assembly.cc
chemical
/
AA.hh
conformation
/
Assembly.cc
pack
/
rotamer_set
/
AddResiduesRotamerSetOperation.hh
conformation
/
Assembly.cc
pose
/
annotated_sequence.hh
conformation
/
Assembly.cc
chemical
/
ChemicalManager.hh
conformation
/
Assembly.cc
scoring
/
dssp
/
Dssp.hh
conformation
/
Assembly.cc
kinematics
/
Edge.hh
conformation
/
Assembly.cc
scoring
/
Energies.hh
conformation
/
Assembly.cc
kinematics
/
FoldTree.hh
conformation
/
Assembly.cc
scoring
/
hbonds
/
HBondSet.hh
conformation
/
Assembly.cc
sequence
/
MatrixScoringScheme.hh
conformation
/
Assembly.cc
scoring
/
motif
/
motif_hash_stuff.hh
conformation
/
Assembly.cc
pose
/
PDBInfo.hh
conformation
/
Assembly.cc
pose
/
Pose.hh
conformation
/
Assembly.cc
pose
/
motif
/
reference_frames.hh
conformation
/
Assembly.cc
conformation
/
Residue.functions.hh
conformation
/
Assembly.cc
conformation
/
ResidueFactory.hh
conformation
/
Assembly.cc
scoring
/
constraints
/
ResidueTypeConstraint.hh
conformation
/
Assembly.cc
chemical
/
ResidueTypeSet.hh
conformation
/
Assembly.cc
scoring
/
ScoreFunction.hh
conformation
/
Assembly.cc
scoring
/
ScoreFunctionFactory.hh
conformation
/
Assembly.cc
select
/
util
/
SelectResiduesByLayer.hh
conformation
/
Assembly.cc
sequence
/
SequenceProfile.hh
conformation
/
Assembly.cc
pose
/
subpose_manipulation_util.hh
conformation
/
Assembly.cc
util
/
SwitchResidueTypeSet.hh
conformation
/
Assembly.cc
pack
/
task
/
TaskFactory.hh
conformation
/
Assembly.cc
pack
/
task
/
operation
/
TaskOperations.hh
conformation
/
Assembly.cc
scoring
/
TenANeighborGraph.hh
conformation
/
Assembly.cc
types.hh
conformation
/
Assembly.cc
scoring
/
motif
/
util.hh
conformation
/
Assembly.cc
chemical
/
VariantType.hh
conformation
/
Assembly.hh
pose
/
Pose.hh
conformation
/
Assembly.hh
pack
/
task
/
TaskFactory.fwd.hh
conformation
/
ContinuousAssembly.cc
pack
/
rotamer_set
/
AddResiduesRotamerSetOperation.hh
conformation
/
ContinuousAssembly.cc
pose
/
annotated_sequence.hh
conformation
/
ContinuousAssembly.cc
kinematics
/
Edge.hh
conformation
/
ContinuousAssembly.cc
kinematics
/
FoldTree.hh
conformation
/
ContinuousAssembly.cc
pose
/
Pose.hh
conformation
/
ContinuousAssembly.cc
conformation
/
Residue.functions.hh
conformation
/
ContinuousAssembly.cc
conformation
/
ResidueFactory.hh
conformation
/
ContinuousAssembly.cc
scoring
/
constraints
/
ResidueTypeConstraint.hh
conformation
/
ContinuousAssembly.cc
pack
/
task
/
TaskFactory.hh
conformation
/
ContinuousAssembly.cc
pack
/
task
/
operation
/
TaskOperations.hh
conformation
/
ContinuousAssembly.cc
pose
/
util.hh
conformation
/
ContinuousAssembly.cc
chemical
/
VariantType.hh
conformation
/
DisembodiedAssembly.cc
pack
/
rotamer_set
/
AddResiduesRotamerSetOperation.hh
conformation
/
DisembodiedAssembly.cc
pose
/
annotated_sequence.hh
conformation
/
DisembodiedAssembly.cc
chemical
/
ChemicalManager.hh
conformation
/
DisembodiedAssembly.cc
scoring
/
dssp
/
Dssp.hh
conformation
/
DisembodiedAssembly.cc
kinematics
/
Edge.hh
conformation
/
DisembodiedAssembly.cc
kinematics
/
FoldTree.hh
conformation
/
DisembodiedAssembly.cc
scoring
/
hbonds
/
HBondSet.hh
conformation
/
DisembodiedAssembly.cc
pose
/
Pose.hh
conformation
/
DisembodiedAssembly.cc
conformation
/
Residue.functions.hh
conformation
/
DisembodiedAssembly.cc
conformation
/
ResidueFactory.hh
conformation
/
DisembodiedAssembly.cc
scoring
/
constraints
/
ResidueTypeConstraint.hh
conformation
/
DisembodiedAssembly.cc
pack
/
task
/
TaskFactory.hh
conformation
/
DisembodiedAssembly.cc
pack
/
task
/
operation
/
TaskOperations.hh
conformation
/
DisembodiedAssembly.cc
pose
/
util.hh
conformation
/
DisembodiedAssembly.cc
chemical
/
VariantType.hh
hashing
/
Hasher.cc
id
/
AtomID.hh
hashing
/
Hasher.cc
id
/
AtomID_Map.hh
hashing
/
Hasher.cc
pose
/
Pose.hh
hashing
/
Hasher.hh
id
/
AtomID.fwd.hh
hashing
/
Hasher.hh
id
/
AtomID_Map.fwd.hh
hashing
/
Hasher.hh
pose
/
Pose.fwd.hh
hashing
/
Hasher.hh
types.hh
util
/
io.cc
chemical
/
ChemicalManager.hh
util
/
io.cc
conformation
/
ResidueFactory.hh
util
/
io.cc
chemical
/
ResidueType.hh
util
/
io.cc
chemical
/
ResidueTypeSet.hh
util
/
io.hh
import_pose
/
import_pose.hh
util
/
io.hh
pose
/
Pose.hh
util
/
io.hh
conformation
/
Residue.hh
util
/
io.hh
types.hh
sampling
/
LegacyAddStartnodeFragments.cc
fragment
/
BBTorsionSRFD.hh
sampling
/
LegacyAddStartnodeFragments.cc
fragment
/
FragData.hh
sampling
/
LegacyAddStartnodeFragments.cc
fragment
/
FragmentIO.hh
sampling
/
LegacyAddStartnodeFragments.cc
fragment
/
FragSet.hh
sampling
/
LegacyAddStartnodeFragments.cc
fragment
/
FrameIterator.hh
sampling
/
LegacyAddStartnodeFragments.cc
import_pose
/
import_pose.hh
sampling
/
LegacyAddStartnodeFragments.cc
fragment
/
util.hh
sampling
/
LegacyAddStartnodeFragments.hh
pose
/
Pose.hh
sampling
/
LegacyAppendAssemblyMover.cc
scoring
/
AtomVDW.hh
sampling
/
LegacyAppendAssemblyMover.cc
scoring
/
dssp
/
Dssp.hh
sampling
/
LegacyAppendAssemblyMover.cc
import_pose
/
import_pose.hh
sampling
/
LegacyAppendAssemblyMover.cc
scoring
/
ScoringManager.hh
sampling
/
LegacyAppendAssemblyMover.cc
pack
/
task
/
TaskFactory.hh
sampling
/
LegacyAppendAssemblyMover.cc
pack
/
task
/
operation
/
TaskOperationCreators.hh
sampling
/
LegacyAppendAssemblyMover.cc
pack
/
task
/
operation
/
TaskOperations.hh
sampling
/
LegacyAppendAssemblyMover.cc
pose
/
util.hh
sampling
/
LegacyAppendAssemblyMover.hh
pose
/
Pose.hh
sampling
/
LegacyAssemblyConstraintsMover.cc
pack
/
rotamer_set
/
AddResiduesRotamerSetOperation.hh
sampling
/
LegacyAssemblyConstraintsMover.cc
scoring
/
Energies.hh
sampling
/
LegacyAssemblyConstraintsMover.cc
pose
/
Pose.hh
sampling
/
LegacyAssemblyConstraintsMover.cc
scoring
/
constraints
/
ResidueTypeConstraint.hh
sampling
/
LegacyAssemblyConstraintsMover.cc
pack
/
rotamer_set
/
RotamerLinks.hh
sampling
/
LegacyAssemblyConstraintsMover.cc
pack
/
task
/
operation
/
task_op_schemas.hh
sampling
/
LegacyAssemblyConstraintsMover.cc
pack
/
task
/
operation
/
TaskOperations.hh
sampling
/
LegacyAssemblyConstraintsMover.cc
scoring
/
TenANeighborGraph.hh
sampling
/
LegacyAssemblyConstraintsMover.hh
pack
/
task
/
operation
/
TaskOperation.hh
sampling
/
LegacyAssemblyMover.cc
scoring
/
Energies.hh
sampling
/
LegacyAssemblyMover.cc
pose
/
Pose.hh
sampling
/
LegacyAssemblyMover.cc
scoring
/
rms_util.hh
sampling
/
LegacyAssemblyMover.cc
scoring
/
ScoreFunction.hh
sampling
/
LegacyAssemblyMover.cc
scoring
/
ScoreFunctionFactory.hh
sampling
/
LegacyAssemblyMover.cc
pack
/
task
/
TaskFactory.hh
sampling
/
LegacyAssemblyMover.cc
pack
/
task
/
operation
/
TaskOperationCreators.hh
sampling
/
LegacyAssemblyMover.cc
pack
/
task
/
operation
/
TaskOperations.hh
sampling
/
LegacyAssemblyMover.cc
pose
/
util.hh
sampling
/
LegacyAssemblyMover.hh
pose
/
Pose.hh
sampling
/
LegacyAssemblyMover.hh
scoring
/
ScoreFunction.hh
scoring
/
LegacyBlosumScorer.cc
types.hh
scoring
/
LegacyCalciumMotifScorer.cc
chemical
/
ChemicalManager.hh
scoring
/
LegacyCalciumMotifScorer.cc
scoring
/
dssp
/
Dssp.hh
scoring
/
LegacyCalciumMotifScorer.cc
pose
/
motif
/
reference_frames.hh
scoring
/
LegacyCalciumMotifScorer.cc
types.hh
scoring
/
LegacyCalciumMotifScorer.cc
scoring
/
motif
/
util.hh
scoring
/
LegacyCalciumMotifScorer.hh
scoring
/
motif
/
motif_hash_stuff.hh
scoring
/
LegacyCalciumMotifScorer.hh
chemical
/
ResidueTypeSet.hh
scoring
/
LegacyClashScorer.cc
scoring
/
AtomVDW.hh
scoring
/
LegacyClashScorer.cc
conformation
/
Residue.hh
scoring
/
LegacyClashScorer.cc
scoring
/
ScoringManager.hh
scoring
/
LegacyClashScorer.cc
types.hh
sampling
/
LegacyEnumerateAssemblyMover.hh
pose
/
Pose.hh
sampling
/
LegacyGivenPathAssemblyMover.hh
pose
/
Pose.hh
sampling
/
requirements
/
LegacyGlobalLengthRequirement.hh
types.hh
sampling
/
requirements
/
LegacyGlobalRequirement.hh
pose
/
Pose.hh
sampling
/
requirements
/
LegacyGlobalRequirement.hh
types.hh
sampling
/
LegacyGreedyAssemblyMover.hh
pose
/
Pose.hh
scoring
/
LegacyInterModelMotifScorer.cc
chemical
/
ChemicalManager.hh
scoring
/
LegacyInterModelMotifScorer.cc
scoring
/
dssp
/
Dssp.hh
scoring
/
LegacyInterModelMotifScorer.cc
pose
/
motif
/
reference_frames.hh
scoring
/
LegacyInterModelMotifScorer.cc
types.hh
scoring
/
LegacyInterModelMotifScorer.cc
scoring
/
motif
/
util.hh
scoring
/
LegacyInterModelMotifScorer.hh
scoring
/
motif
/
motif_hash_stuff.hh
scoring
/
LegacyInterModelMotifScorer.hh
chemical
/
ResidueTypeSet.hh
sampling
/
requirements
/
LegacyIntraSegmentRequirement.hh
pose
/
Pose.hh
sampling
/
requirements
/
LegacyIntraSegmentRequirement.hh
types.hh
sampling
/
LegacyLoophashAssemblyMover.cc
chemical
/
ChemicalManager.hh
sampling
/
LegacyLoophashAssemblyMover.cc
scoring
/
constraints
/
ConstraintSet.hh
sampling
/
LegacyLoophashAssemblyMover.cc
scoring
/
Energies.hh
sampling
/
LegacyLoophashAssemblyMover.cc
kinematics
/
FoldTree.hh
sampling
/
LegacyLoophashAssemblyMover.cc
kinematics
/
MoveMap.hh
sampling
/
LegacyLoophashAssemblyMover.cc
conformation
/
Residue.hh
sampling
/
LegacyLoophashAssemblyMover.cc
conformation
/
ResidueFactory.hh
sampling
/
LegacyLoophashAssemblyMover.cc
scoring
/
rms_util.hh
sampling
/
LegacyLoophashAssemblyMover.cc
scoring
/
ScoreFunction.hh
sampling
/
LegacyLoophashAssemblyMover.cc
scoring
/
ScoreFunctionFactory.hh
sampling
/
LegacyLoophashAssemblyMover.cc
pose
/
util.hh
sampling
/
LegacyLoophashAssemblyMover.cc
conformation
/
util.hh
sampling
/
LegacyLoophashAssemblyMover.cc
chemical
/
VariantType.hh
sampling
/
LegacyMonteCarloAssemblyMover.hh
pose
/
Pose.hh
scoring
/
LegacyMotifScorer.cc
chemical
/
ChemicalManager.hh
scoring
/
LegacyMotifScorer.cc
scoring
/
dssp
/
Dssp.hh
scoring
/
LegacyMotifScorer.cc
pose
/
motif
/
reference_frames.hh
scoring
/
LegacyMotifScorer.cc
types.hh
scoring
/
LegacyMotifScorer.cc
scoring
/
motif
/
util.hh
scoring
/
LegacyMotifScorer.hh
scoring
/
motif
/
motif_hash_stuff.hh
scoring
/
LegacyMotifScorer.hh
chemical
/
ResidueTypeSet.hh
scoring
/
LegacyMotifScorer.hh
types.hh
scoring
/
LegacyPartnerMotifScorer.cc
chemical
/
ChemicalManager.hh
scoring
/
LegacyPartnerMotifScorer.cc
scoring
/
dssp
/
Dssp.hh
scoring
/
LegacyPartnerMotifScorer.cc
pose
/
Pose.hh
scoring
/
LegacyPartnerMotifScorer.cc
pose
/
motif
/
reference_frames.hh
scoring
/
LegacyPartnerMotifScorer.cc
types.hh
scoring
/
LegacyPartnerMotifScorer.cc
scoring
/
motif
/
util.hh
scoring
/
LegacyPartnerMotifScorer.hh
scoring
/
motif
/
motif_hash_stuff.hh
scoring
/
LegacyPartnerMotifScorer.hh
chemical
/
ResidueTypeSet.hh
sampling
/
LegacyReadNativeRotamersFileCreator.hh
pack
/
task
/
operation
/
TaskOperationCreator.hh
sampling
/
LegacyReadRepeatNativeRotamersFileCreator.hh
pack
/
task
/
operation
/
TaskOperationCreator.hh
sampling
/
LegacyRehashAssemblyMover.cc
chemical
/
ChemicalManager.hh
sampling
/
LegacyRehashAssemblyMover.cc
kinematics
/
FoldTree.hh
sampling
/
LegacyRehashAssemblyMover.cc
kinematics
/
MoveMap.hh
sampling
/
LegacyRehashAssemblyMover.cc
conformation
/
Residue.hh
sampling
/
LegacyRehashAssemblyMover.cc
conformation
/
ResidueFactory.hh
sampling
/
LegacyRehashAssemblyMover.cc
scoring
/
rms_util.hh
sampling
/
LegacyRehashAssemblyMover.cc
scoring
/
ScoreFunction.hh
sampling
/
LegacyRehashAssemblyMover.cc
scoring
/
ScoreFunctionFactory.hh
sampling
/
LegacyRehashAssemblyMover.cc
pose
/
util.hh
sampling
/
LegacyRehashAssemblyMover.cc
conformation
/
util.hh
sampling
/
LegacyRehashAssemblyMover.cc
chemical
/
VariantType.hh
sampling
/
LegacyRepeatAssemblyMover.cc
scoring
/
Energies.hh
sampling
/
LegacyRepeatAssemblyMover.cc
import_pose
/
import_pose.hh
sampling
/
LegacyRepeatAssemblyMover.cc
conformation
/
Residue.hh
sampling
/
LegacyRepeatAssemblyMover.cc
conformation
/
ResidueFactory.hh
sampling
/
LegacyRepeatAssemblyMover.cc
chemical
/
ResidueTypeSet.hh
sampling
/
LegacyRepeatAssemblyMover.cc
pack
/
rotamer_set
/
RotamerLinks.hh
sampling
/
LegacyRepeatAssemblyMover.cc
pack
/
task
/
TaskFactory.hh
sampling
/
LegacyRepeatAssemblyMover.cc
pack
/
task
/
operation
/
TaskOperationCreators.hh
sampling
/
LegacyRepeatAssemblyMover.cc
pack
/
task
/
operation
/
TaskOperations.hh
sampling
/
LegacyRepeatAssemblyMover.cc
pose
/
symmetry
/
util.hh
sampling
/
LegacyRepeatAssemblyMover.hh
pose
/
Pose.hh
sampling
/
requirements
/
LegacyRequirementFactory.cc
scoring
/
ScoreFunction.fwd.hh
sampling
/
requirements
/
LegacyRequirementFactory.hh
pose
/
Pose.fwd.hh
sampling
/
requirements
/
LegacyRequirementSet.hh
types.hh
sampling
/
requirements
/
LegacyResidueRetentionRequirement.hh
types.hh
sampling
/
requirements
/
LegacySegmentLengthRequirement.hh
types.hh
conformation
/
Model.cc
pose
/
annotated_sequence.hh
conformation
/
Model.cc
chemical
/
ChemicalManager.hh
conformation
/
Model.cc
scoring
/
Energies.hh
conformation
/
Model.cc
pose
/
Pose.hh
conformation
/
Model.cc
conformation
/
Residue.functions.hh
conformation
/
Model.cc
conformation
/
ResidueFactory.hh
conformation
/
Model.cc
scoring
/
rms_util.hh
conformation
/
Model.cc
scoring
/
ScoreFunctionFactory.hh
conformation
/
Model.cc
scoring
/
ScoreType.hh
conformation
/
Model.cc
scoring
/
TenANeighborGraph.hh
conformation
/
Model.cc
pose
/
util.hh
conformation
/
Model.cc
chemical
/
VariantType.hh
conformation
/
Model.hh
id
/
AtomID.hh
conformation
/
Model.hh
id
/
AtomID_Map.hh
conformation
/
Model.hh
pose
/
Pose.fwd.hh
sampling
/
SewGraph.cc
pose
/
annotated_sequence.hh
sampling
/
SewGraph.cc
chemical
/
ChemicalManager.hh
sampling
/
SewGraph.cc
pose
/
Pose.hh
sampling
/
SewGraph.cc
conformation
/
Residue.functions.hh
sampling
/
SewGraph.cc
conformation
/
ResidueFactory.hh
sampling
/
SewGraph.cc
scoring
/
rms_util.hh
sampling
/
SewGraph.cc
pose
/
util.hh
sampling
/
SewGraph.hh
id
/
AtomID.hh
sampling
/
SewGraph.hh
id
/
AtomID_Map.hh
sampling
/
SewGraph.hh
pose
/
Pose.fwd.hh
util
/
util.cc
kinematics
/
FoldTree.hh
util
/
util.cc
kinematics
/
MoveMap.hh
util
/
util.cc
conformation
/
Residue.hh
util
/
util.cc
conformation
/
ResidueFactory.hh
util
/
util.cc
scoring
/
ScoreFunctionFactory.hh
util
/
util.hh
pose
/
Pose.hh
Generated on Fri Apr 23 2021 03:47:11 for Rosetta by
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