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ligand_docking → core Relation

File in src/protocols/ligand_dockingIncludes file in src/core
AddHydrogen.ccchemical / ChemicalManager.hh
AddHydrogen.ccconformation / Conformation.hh
AddHydrogen.cckinematics / Jump.hh
AddHydrogen.ccchemical / MutableResidueType.hh
AddHydrogen.ccchemical / PatchOperation.hh
AddHydrogen.ccpose / Pose.hh
AddHydrogen.ccchemical / PoseResidueTypeSet.hh
AddHydrogen.ccconformation / Residue.hh
AddHydrogen.ccchemical / ResidueConnection.hh
AddHydrogen.ccchemical / ResidueTypeSet.hh
AddHydrogen.cctypes.hh
AddHydrogen.hhpose / Pose.fwd.hh
AddHydrogens.ccpose / chains_util.hh
AddHydrogens.ccconformation / Conformation.hh
AddHydrogens.ccpose / Pose.hh
AddHydrogens.cctypes.hh
AddHydrogens.ccpose / util.hh
AddHydrogens.hhpose / Pose.fwd.hh
AtomCountFilter.ccpose / chains_util.hh
AtomCountFilter.ccconformation / Conformation.hh
AtomCountFilter.ccpose / Pose.hh
AtomCountFilter.cctypes.hh
AtomCountFilter.ccpose / util.hh
AtomCountFilter.hhtypes.hh
ChainExistsFilter.ccpose / chains_util.hh
ChainExistsFilter.ccconformation / Conformation.hh
ChainExistsFilter.ccpose / Pose.hh
ChainExistsFilter.cctypes.hh
ChainExistsFilter.ccpose / util.hh
ChainExistsFilter.hhtypes.hh
CompleteConnectionsFilter.ccpose / chains_util.hh
CompleteConnectionsFilter.ccconformation / Conformation.hh
CompleteConnectionsFilter.ccpose / Pose.hh
CompleteConnectionsFilter.cctypes.hh
CompleteConnectionsFilter.ccpose / util.hh
CompleteConnectionsFilter.hhtypes.hh
CompoundTranslate.ccpose / chains_util.hh
CompoundTranslate.cckinematics / Jump.hh
CompoundTranslate.cctypes.hh
CompoundTranslate.ccpose / util.hh
ComputeLigandRDF.ccid / AtomID.hh
ComputeLigandRDF.ccchemical / AtomType.hh
ComputeLigandRDF.ccpose / chains_util.hh
ComputeLigandRDF.ccscoring / etable / coulomb / Coulomb.hh
ComputeLigandRDF.ccscoring / Energies.hh
ComputeLigandRDF.ccscoring / methods / EnergyMethodOptions.hh
ComputeLigandRDF.ccscoring / etable / Etable.hh
ComputeLigandRDF.ccscoring / etable / EtableEnergy.hh
ComputeLigandRDF.ccscoring / orbitals / OrbitalsScore.hh
ComputeLigandRDF.ccchemical / orbitals / OrbitalType.hh
ComputeLigandRDF.ccpose / Pose.hh
ComputeLigandRDF.ccchemical / ResidueType.hh
ComputeLigandRDF.ccscoring / ScoreFunction.hh
ComputeLigandRDF.ccscoring / ScoringManager.hh
ComputeLigandRDF.ccscoring / TenANeighborGraph.hh
ComputeLigandRDF.ccpose / util.hh
ComputeLigandRDF.hhid / AtomID.hh
ComputeLigandRDF.hhchemical / AtomType.hh
ComputeLigandRDF.hhscoring / etable / coulomb / Coulomb.hh
ComputeLigandRDF.hhscoring / etable / EtableEnergy.hh
ComputeLigandRDF.hhscoring / hbonds / HBondSet.hh
ComputeLigandRDF.hhpose / Pose.fwd.hh
ComputeLigandRDF.hhscoring / ScoreFunction.fwd.hh
GALigandDock / EntropyEstimator.ccchemical / AA.hh
GALigandDock / EntropyEstimator.cckinematics / FoldTree.hh
GALigandDock / EntropyEstimator.cckinematics / MoveMap.hh
GALigandDock / EntropyEstimator.ccpose / Pose.hh
GALigandDock / EntropyEstimator.ccconformation / Residue.hh
GALigandDock / EntropyEstimator.ccchemical / ResidueType.hh
GALigandDock / EntropyEstimator.ccscoring / ScoreFunction.hh
GALigandDock / EntropyEstimator.ccpose / util.hh
GALigandDock / EntropyEstimator.hhpose / Pose.hh
GALigandDock / EntropyEstimator.hhtypes.hh
FinalMinimizer.cckinematics / FoldTree.hh
FinalMinimizer.ccoptimization / MinimizerOptions.hh
FinalMinimizer.cckinematics / MoveMap.hh
FinalMinimizer.ccpose / Pose.hh
FinalMinimizer.ccscoring / ScoreFunction.hh
FinalMinimizer.cctypes.hh
FinalMinimizer.hhscoring / ScoreFunction.fwd.hh
GALigandDock / GALigandDock.ccscoring / constraints / AtomPairConstraint.hh
GALigandDock / GALigandDock.ccoptimization / AtomTreeMinimizer.hh
GALigandDock / GALigandDock.ccio / silent / BinarySilentStruct.hh
GALigandDock / GALigandDock.ccoptimization / CartesianMinimizer.hh
GALigandDock / GALigandDock.ccchemical / ChemicalManager.hh
GALigandDock / GALigandDock.ccscoring / constraints / Constraint.hh
GALigandDock / GALigandDock.ccscoring / constraints / ConstraintSet.hh
GALigandDock / GALigandDock.ccscoring / constraints / CoordinateConstraint.hh
GALigandDock / GALigandDock.ccscoring / Energies.hh
GALigandDock / GALigandDock.ccpose / extra_pose_info_util.hh
GALigandDock / GALigandDock.cckinematics / FoldTree.hh
GALigandDock / GALigandDock.ccscoring / func / HarmonicFunc.hh
GALigandDock / GALigandDock.ccimport_pose / import_pose.hh
GALigandDock / GALigandDock.cckinematics / MoveMap.hh
GALigandDock / GALigandDock.ccpack / optimizeH.hh
GALigandDock / GALigandDock.ccpack / pack_rotamers.hh
GALigandDock / GALigandDock.ccpack / task / PackerTask.hh
GALigandDock / GALigandDock.ccselect / residue_selector / ResidueSelector.hh
GALigandDock / GALigandDock.ccchemical / ResidueTypeSet.hh
GALigandDock / GALigandDock.ccscoring / rms_util.hh
GALigandDock / GALigandDock.ccpack / rtmin.hh
GALigandDock / GALigandDock.ccscoring / func / ScalarWeightedFunc.hh
GALigandDock / GALigandDock.ccscoring / ScoreFunctionFactory.hh
GALigandDock / GALigandDock.ccscoring / ScoreType.hh
GALigandDock / GALigandDock.ccpose / selection.hh
GALigandDock / GALigandDock.ccio / silent / SilentFileData.hh
GALigandDock / GALigandDock.ccio / silent / SilentFileOptions.hh
GALigandDock / GALigandDock.ccpack / task / TaskFactory.hh
GALigandDock / GALigandDock.ccpack / task / operation / TaskOperations.hh
GALigandDock / GALigandDock.ccscoring / func / TopOutFunc.hh
GALigandDock / GALigandDock.ccscoring / constraints / util.hh
GALigandDock / GALigandDock.ccpose / symmetry / util.hh
GALigandDock / GALigandDock.ccpose / util.hh
GALigandDock / GALigandDock.ccselect / util.hh
GALigandDock / GALigandDock.ccconformation / util.hh
GALigandDock / GALigandDock.hhscoring / constraints / ConstraintSet.hh
GALigandDock / GALigandDock.hhpose / extra_pose_info_util.hh
GALigandDock / GALigandDock.hhselect / residue_selector / ResidueSelector.fwd.hh
GALigandDock / GALigandDock.hhio / silent / SilentFileOptions.hh
GALigandDock / GALigandDock.hhio / silent / SilentStruct.hh
GALigandDock / GALigandDock.hhio / silent / SilentStructFactory.hh
GALigandDock / GAOptimizer.ccchemical / AA.hh
GALigandDock / GAOptimizer.ccchemical / ChemicalManager.hh
GALigandDock / GAOptimizer.ccpack / dunbrack / DunbrackRotamer.hh
GALigandDock / GAOptimizer.ccscoring / Energies.hh
GALigandDock / GAOptimizer.ccscoring / lkball / LK_BallEnergy.hh
GALigandDock / GAOptimizer.ccpack / task / PackerTask.hh
GALigandDock / GAOptimizer.ccchemical / ResidueTypeSet.hh
GALigandDock / GAOptimizer.ccscoring / rms_util.hh
GALigandDock / GAOptimizer.ccpack / dunbrack / RotamerLibrary.hh
GALigandDock / GAOptimizer.ccpack / dunbrack / SingleResidueDunbrackLibrary.hh
GALigandDock / GAOptimizer.ccpack / rotamers / SingleResidueRotamerLibrary.hh
GALigandDock / GAOptimizer.ccpack / rotamers / SingleResidueRotamerLibraryFactory.hh
GALigandDock / GAOptimizer.ccpack / task / TaskFactory.hh
grid_functions.ccpack / palette / NoDesignPackerPalette.hh
grid_functions.ccpack / task / PackerTask.hh
grid_functions.ccpose / Pose.hh
grid_functions.ccconformation / Residue.hh
grid_functions.ccchemical / ResidueType.hh
grid_functions.ccpack / dunbrack / RotamerLibrary.hh
grid_functions.ccscoring / ScoreFunction.hh
grid_functions.ccpack / rotamers / SingleResidueRotamerLibrary.hh
grid_functions.ccpack / rotamers / SingleResidueRotamerLibraryFactory.hh
grid_functions.ccpack / task / TaskFactory.hh
grid_functions.hhgrid / CartGrid.hh
grid_functions.hhpack / task / PackerTask.fwd.hh
grid_functions.hhpose / Pose.fwd.hh
grid_functions.hhconformation / Residue.fwd.hh
GALigandDock / GriddedAtomTreeMultifunc.ccoptimization / atom_tree_minimize.hh
GALigandDock / GriddedAtomTreeMultifunc.cckinematics / AtomTree.hh
GALigandDock / GriddedAtomTreeMultifunc.ccoptimization / DOF_Node.hh
GALigandDock / GriddedAtomTreeMultifunc.cckinematics / FoldTree.hh
GALigandDock / GriddedAtomTreeMultifunc.ccoptimization / MinimizerMap.hh
GALigandDock / GriddedAtomTreeMultifunc.cckinematics / MoveMap.hh
GALigandDock / GriddedAtomTreeMultifunc.ccoptimization / NumericalDerivCheckResult.hh
GALigandDock / GriddedAtomTreeMultifunc.ccpose / Pose.hh
GALigandDock / GriddedAtomTreeMultifunc.cctypes.hh
GALigandDock / GriddedAtomTreeMultifunc.ccid / types.hh
GALigandDock / GriddedAtomTreeMultifunc.hhoptimization / MinimizerMap.hh
GALigandDock / GriddedAtomTreeMultifunc.hhoptimization / Multifunc.hh
GALigandDock / GridHash3D.hhconformation / Atom.hh
GALigandDock / GridHash3D.hhscoring / hbonds / HBEvalTuple.hh
GALigandDock / GridHash3D.hhscoring / lkball / LK_BallInfo.hh
GALigandDock / GridHash3D.hhtypes.hh
GALigandDock / GridScorer.ccconformation / Atom.hh
GALigandDock / GridScorer.ccoptimization / AtomTreeMinimizer.hh
GALigandDock / GridScorer.ccchemical / AtomType.hh
GALigandDock / GridScorer.ccchemical / AtomTypeSet.hh
GALigandDock / GridScorer.ccenergy_methods / CartesianBondedEnergy.hh
GALigandDock / GridScorer.ccchemical / ChemicalManager.hh
GALigandDock / GridScorer.ccscoring / hbonds / constants.hh
GALigandDock / GridScorer.ccscoring / etable / count_pair / CountPairFactory.hh
GALigandDock / GridScorer.ccscoring / etable / count_pair / CountPairFunction.hh
GALigandDock / GridScorer.ccscoring / disulfides / DisulfideAtomIndices.hh
GALigandDock / GridScorer.ccscoring / Energies.hh
GALigandDock / GridScorer.ccscoring / EnergyGraph.hh
GALigandDock / GridScorer.ccscoring / methods / EnergyMethodOptions.hh
GALigandDock / GridScorer.ccscoring / etable / Etable.hh
GALigandDock / GridScorer.ccscoring / elec / FA_ElecEnergy.hh
GALigandDock / GridScorer.cckinematics / FoldTree.hh
GALigandDock / GridScorer.ccscoring / disulfides / FullatomDisulfidePotential.hh
GALigandDock / GridScorer.ccscoring / hbonds / HBondDatabase.hh
GALigandDock / GridScorer.ccscoring / MinimizationGraph.hh
GALigandDock / GridScorer.ccoptimization / Minimizer.hh
GALigandDock / GridScorer.cckinematics / MoveMap.hh
GALigandDock / GridScorer.ccpack / optimizeH.hh
GALigandDock / GridScorer.ccpose / Pose.hh
GALigandDock / GridScorer.ccconformation / Residue.hh
GALigandDock / GridScorer.ccconformation / residue_datacache.hh
GALigandDock / GridScorer.ccchemical / ResidueConnection.hh
GALigandDock / GridScorer.ccchemical / ResidueProperties.hh
GALigandDock / GridScorer.ccscoring / ScoreFunction.hh
GALigandDock / GridScorer.ccscoring / ScoreFunctionFactory.hh
GALigandDock / GridScorer.ccscoring / ScoreType.hh
GALigandDock / GridScorer.ccscoring / ScoringManager.hh
GALigandDock / GridScorer.ccscoring / etable / count_pair / types.hh
GALigandDock / GridScorer.cctypes.hh
GALigandDock / GridScorer.ccchemical / util.hh
GALigandDock / GridScorer.hhconformation / Atom.hh
GALigandDock / GridScorer.hhenergy_methods / CartesianBondedEnergy.fwd.hh
GALigandDock / GridScorer.hhscoring / etable / coulomb / Coulomb.hh
GALigandDock / GridScorer.hhscoring / DerivVectorPair.hh
GALigandDock / GridScorer.hhscoring / etable / Etable.hh
GALigandDock / GridScorer.hhscoring / hbonds / HBEvalTuple.hh
GALigandDock / GridScorer.hhscoring / hbonds / HBondOptions.hh
GALigandDock / GridScorer.hhscoring / hbonds / hbonds.hh
GALigandDock / GridScorer.hhscoring / hbonds / hbonds_geom.hh
GALigandDock / GridScorer.hhscoring / lkball / LK_BallEnergy.hh
GALigandDock / GridScorer.hhoptimization / MinimizerMap.hh
GALigandDock / GridScorer.hhoptimization / MinimizerOptions.hh
GALigandDock / GridScorer.hhpose / Pose.hh
GALigandDock / GridScorer.hhconformation / Residue.hh
GALigandDock / GridScorer.hhscoring / ScoreFunction.hh
GALigandDock / GridScorer.hhscoring / electron_density / SplineInterp.hh
GALigandDock / GridScorer.hhtypes.hh
GALigandDock / GridScorer.hhscoring / electron_density / util.hh
GrowLigand.ccchemical / AtomTypeSet.hh
GrowLigand.ccpose / chains_util.hh
GrowLigand.ccchemical / ChemicalManager.hh
GrowLigand.ccconformation / Conformation.hh
GrowLigand.ccpose / Pose.hh
GrowLigand.ccconformation / Residue.hh
GrowLigand.ccchemical / ResidueTypeFinder.hh
GrowLigand.cctypes.hh
GrowLigand.ccpose / util.hh
GrowLigand.hhpose / Pose.fwd.hh
GrowLigand.hhconformation / Residue.fwd.hh
HBondAcceptorFilter.ccpose / chains_util.hh
HBondAcceptorFilter.ccconformation / Conformation.hh
HBondAcceptorFilter.ccpose / Pose.hh
HBondAcceptorFilter.cctypes.hh
HBondAcceptorFilter.ccpose / util.hh
HBondAcceptorFilter.hhtypes.hh
HBondDonorFilter.ccpose / chains_util.hh
HBondDonorFilter.ccconformation / Conformation.hh
HBondDonorFilter.ccpose / Pose.hh
HBondDonorFilter.cctypes.hh
HBondDonorFilter.ccpose / util.hh
HBondDonorFilter.hhtypes.hh
HeavyAtomFilter.ccpose / chains_util.hh
HeavyAtomFilter.ccconformation / Conformation.hh
HeavyAtomFilter.ccpose / Pose.hh
HeavyAtomFilter.cctypes.hh
HeavyAtomFilter.ccpose / util.hh
HeavyAtomFilter.hhtypes.hh
HighResDocker.ccpose / chains_util.hh
HighResDocker.ccpack / palette / CustomBaseTypePackerPalette.hh
HighResDocker.ccoptimization / MinimizerOptions.hh
HighResDocker.cckinematics / MoveMap.hh
HighResDocker.ccpack / palette / PackerPalette.hh
HighResDocker.ccpack / task / PackerTask.hh
HighResDocker.ccpose / Pose.hh
HighResDocker.ccpack / task / ResfileReader.hh
HighResDocker.ccconformation / Residue.hh
HighResDocker.ccchemical / ResidueType.hh
HighResDocker.ccchemical / ResidueTypeFinder.hh
HighResDocker.ccchemical / ResidueTypeSet.hh
HighResDocker.ccscoring / ScoreFunction.hh
HighResDocker.ccpack / task / TaskFactory.hh
HighResDocker.cctypes.hh
HighResDocker.ccpack / rotamer_set / UnboundRotamersOperation.hh
HighResDocker.ccpose / util.hh
HighResDocker.hhpack / task / PackerTask.fwd.hh
HighResDocker.hhpose / Pose.fwd.hh
HighResDocker.hhscoring / ScoreFunction.fwd.hh
HighResDocker.hhtypes.hh
HighResEnsemble.ccpose / chains_util.hh
HighResEnsemble.ccscoring / Energies.hh
HighResEnsemble.ccoptimization / MinimizerOptions.hh
HighResEnsemble.cckinematics / MoveMap.hh
HighResEnsemble.ccpack / task / PackerTask.hh
HighResEnsemble.ccpose / Pose.hh
HighResEnsemble.ccpack / task / ResfileReader.hh
HighResEnsemble.ccconformation / Residue.hh
HighResEnsemble.ccchemical / ResidueType.hh
HighResEnsemble.ccchemical / ResidueTypeSet.hh
HighResEnsemble.ccscoring / ScoreFunction.hh
HighResEnsemble.ccpack / task / TaskFactory.hh
HighResEnsemble.cctypes.hh
HighResEnsemble.ccpack / rotamer_set / UnboundRotamersOperation.hh
HighResEnsemble.ccpose / util.hh
HighResEnsemble.hhpack / task / PackerTask.fwd.hh
HighResEnsemble.hhpose / Pose.fwd.hh
HighResEnsemble.hhscoring / ScoreFunction.fwd.hh
HighResEnsemble.hhtypes.hh
ligand_options / Interface.cctypes.hh
ligand_options / Interface.hhtypes.hh
ligand_options / interface_distance_functions.ccconformation / Residue.hh
ligand_options / interface_distance_functions.cctypes.hh
ligand_options / interface_distance_functions.hhconformation / Residue.fwd.hh
ligand_options / interface_distance_functions.hhtypes.hh
InterfaceBuilder.ccpose / chains_util.hh
InterfaceBuilder.ccconformation / Conformation.hh
InterfaceBuilder.ccpose / Pose.hh
InterfaceBuilder.cctypes.hh
InterfaceBuilder.ccpose / util.hh
InterfaceBuilder.hhpose / Pose.fwd.hh
InterfaceBuilder.hhconformation / Residue.fwd.hh
InterfaceBuilder.hhtypes.hh
InterfaceScoreCalculator.ccpose / chains_util.hh
InterfaceScoreCalculator.ccscoring / Energies.hh
InterfaceScoreCalculator.ccimport_pose / import_pose.hh
InterfaceScoreCalculator.ccpose / Pose.hh
InterfaceScoreCalculator.ccscoring / ScoreFunction.hh
InterfaceScoreCalculator.cctypes.hh
InterfaceScoreCalculator.ccpose / util.hh
InterfaceScoreCalculator.hhscoring / ScoreFunction.fwd.hh
ligand_dock_impl.ccchemical / ChemicalManager.hh
ligand_dock_impl.ccimport_pose / import_pose.hh
ligand_dock_impl.ccpose / Pose.hh
ligand_dock_impl.ccscoring / ScoreFunction.hh
ligand_dock_impl.cctypes.hh
ligand_functions.ccscoring / constraints / AmbiguousConstraint.hh
ligand_functions.ccid / AtomID.hh
ligand_functions.ccscoring / func / CircularHarmonicFunc.hh
ligand_functions.ccscoring / constraints / Constraint.hh
ligand_functions.ccscoring / constraints / ConstraintSet.hh
ligand_functions.ccscoring / constraints / DihedralConstraint.hh
ligand_functions.ccpack / palette / NoDesignPackerPalette.hh
ligand_functions.ccpack / task / PackerTask.hh
ligand_functions.ccpose / Pose.hh
ligand_functions.ccconformation / Residue.hh
ligand_functions.ccpack / task / TaskFactory.hh
ligand_functions.hhscoring / constraints / Constraint.fwd.hh
ligand_functions.hhpose / Pose.fwd.hh
ligand_functions.hhconformation / Residue.fwd.hh
ligand_functions.hhchemical / ResidueType.fwd.hh
ligand_scores.ccpose / chains_util.hh
ligand_scores.ccselect / residue_selector / ChainSelector.hh
ligand_scores.ccconformation / Conformation.hh
ligand_scores.ccscoring / Energies.hh
ligand_scores.cckinematics / FoldTree.hh
ligand_scores.ccconformation / membrane / MembraneInfo.hh
ligand_scores.cckinematics / MoveMap.fwd.hh
ligand_scores.ccpose / PDBInfo.hh
ligand_scores.ccconformation / Residue.hh
ligand_scores.ccscoring / rms_util.hh
ligand_scores.ccscoring / rms_util.tmpl.hh
ligand_scores.ccscoring / ScoreFunction.hh
ligand_scores.ccscoring / ScoreType.hh
ligand_scores.cctypes.hh
ligand_scores.cckinematics / util.hh
ligand_scores.ccconformation / util.hh
ligand_scores.ccpose / util.hh
ligand_scores.hhscoring / EnergyMap.fwd.hh
ligand_scores.hhpose / Pose.fwd.hh
ligand_scores.hhconformation / Residue.fwd.hh
ligand_scores.hhscoring / ScoreFunction.fwd.hh
ligand_scores.hhtypes.hh
GALigandDock / LigandAligner.ccid / AtomID.hh
GALigandDock / LigandAligner.ccchemical / Bond.hh
GALigandDock / LigandAligner.ccchemical / ChemicalManager.fwd.hh
GALigandDock / LigandAligner.ccchemical / ChemicalManager.hh
GALigandDock / LigandAligner.ccscoring / func / ConstantFunc.hh
GALigandDock / LigandAligner.ccscoring / constraints / ConstraintSet.hh
GALigandDock / LigandAligner.ccscoring / constraints / CoordinateConstraint.hh
GALigandDock / LigandAligner.ccscoring / dssp / Dssp.hh
GALigandDock / LigandAligner.ccscoring / Energies.hh
GALigandDock / LigandAligner.ccscoring / methods / EnergyMethodOptions.hh
GALigandDock / LigandAligner.ccpose / extra_pose_info_util.hh
GALigandDock / LigandAligner.cckinematics / FoldTree.hh
GALigandDock / LigandAligner.ccscoring / func / HarmonicFunc.hh
GALigandDock / LigandAligner.ccscoring / hbonds / HBondSet.hh
GALigandDock / LigandAligner.ccimport_pose / import_pose.hh
GALigandDock / LigandAligner.ccoptimization / Minimizer.hh
GALigandDock / LigandAligner.ccoptimization / MinimizerOptions.hh
GALigandDock / LigandAligner.cckinematics / MoveMap.hh
GALigandDock / LigandAligner.ccio / pdb / pdb_writer.hh
GALigandDock / LigandAligner.ccpose / PDBInfo.hh
GALigandDock / LigandAligner.ccpose / Pose.hh
GALigandDock / LigandAligner.ccconformation / residue_datacache.hh
GALigandDock / LigandAligner.ccchemical / ResidueGraphTypes.hh
GALigandDock / LigandAligner.ccscoring / rms_util.hh
GALigandDock / LigandAligner.ccscoring / ScoreFunction.hh
GALigandDock / LigandAligner.ccscoring / ScoreFunctionFactory.hh
GALigandDock / LigandAligner.ccscoring / func / SumFunc.hh
GALigandDock / LigandAligner.ccutil / SwitchResidueTypeSet.hh
GALigandDock / LigandAligner.ccscoring / func / TopOutFunc.hh
GALigandDock / LigandAligner.ccchemical / types.hh
GALigandDock / LigandAligner.cctypes.hh
GALigandDock / LigandAligner.ccscoring / constraints / util.hh
GALigandDock / LigandAligner.ccpose / util.hh
GALigandDock / LigandAligner.hhscoring / func / ConstantFunc.hh
GALigandDock / LigandAligner.hhscoring / constraints / ConstraintSet.hh
GALigandDock / LigandAligner.hhscoring / constraints / CoordinateConstraint.hh
GALigandDock / LigandAligner.hhscoring / Energies.hh
GALigandDock / LigandAligner.hhpose / PDBInfo.hh
GALigandDock / LigandAligner.hhpose / Pose.hh
GALigandDock / LigandAligner.hhscoring / ScoreFunction.hh
GALigandDock / LigandAligner.hhscoring / ScoreFunctionFactory.hh
GALigandDock / LigandAligner.hhscoring / func / SumFunc.hh
GALigandDock / LigandAligner.hhscoring / func / TopOutFunc.hh
GALigandDock / LigandAligner.hhtypes.hh
LigandArea.cctypes.hh
LigandArea.hhtypes.hh
LigandBaseProtocol.cckinematics / tree / Atom.hh
LigandBaseProtocol.ccid / AtomID.hh
LigandBaseProtocol.cckinematics / AtomTree.hh
LigandBaseProtocol.ccchemical / AtomType.hh
LigandBaseProtocol.ccchemical / automorphism.hh
LigandBaseProtocol.ccscoring / constraints / CoordinateConstraint.hh
LigandBaseProtocol.ccpack / palette / CustomBaseTypePackerPalette.hh
LigandBaseProtocol.ccscoring / Energies.hh
LigandBaseProtocol.ccscoring / EnergyGraph.hh
LigandBaseProtocol.ccscoring / methods / EnergyMethodOptions.hh
LigandBaseProtocol.cckinematics / FoldTree.hh
LigandBaseProtocol.ccscoring / func / HarmonicFunc.hh
LigandBaseProtocol.cckinematics / MoveMap.hh
LigandBaseProtocol.ccpack / palette / PackerPalette.hh
LigandBaseProtocol.ccpack / task / PackerTask.hh
LigandBaseProtocol.ccpose / Pose.hh
LigandBaseProtocol.ccconformation / Residue.hh
LigandBaseProtocol.ccchemical / ResidueType.hh
LigandBaseProtocol.ccchemical / ResidueTypeFinder.hh
LigandBaseProtocol.ccchemical / ResidueTypeSet.hh
LigandBaseProtocol.ccpack / dunbrack / RotamerLibrary.hh
LigandBaseProtocol.ccscoring / ScoreFunction.hh
LigandBaseProtocol.ccscoring / ScoreFunctionFactory.hh
LigandBaseProtocol.ccpack / rotamers / SingleResidueRotamerLibrary.hh
LigandBaseProtocol.ccpack / rotamers / SingleResidueRotamerLibraryFactory.hh
LigandBaseProtocol.ccpack / task / TaskFactory.hh
LigandBaseProtocol.ccpack / rotamer_set / UnboundRotamersOperation.hh
LigandBaseProtocol.ccpose / variant_util.hh
LigandBaseProtocol.ccchemical / VariantType.hh
LigandBaseProtocol.hhimport_pose / atom_tree_diffs / atom_tree_diff.hh
LigandBaseProtocol.hhscoring / constraints / Constraint.fwd.hh
LigandBaseProtocol.hhscoring / func / Func.fwd.hh
LigandBaseProtocol.hhkinematics / MoveMap.fwd.hh
LigandBaseProtocol.hhpack / task / PackerTask.fwd.hh
LigandBaseProtocol.hhconformation / Residue.fwd.hh
LigandBaseProtocol.hhscoring / ScoreFunction.fwd.hh
LigandBaseProtocol.hhtypes.hh
LigandBaseProtocol.hhpack / rotamer_set / UnboundRotamersOperation.fwd.hh
GALigandDock / LigandConformer.ccid / AtomID.hh
GALigandDock / LigandConformer.ccid / AtomID_Map.hh
GALigandDock / LigandConformer.cckinematics / FoldTree.hh
GALigandDock / LigandConformer.cckinematics / Jump.hh
GALigandDock / LigandConformer.ccid / NamedAtomID.hh
GALigandDock / LigandConformer.ccconformation / Residue.hh
GALigandDock / LigandConformer.ccchemical / rings / RingConformerSet.hh
GALigandDock / LigandConformer.ccscoring / rms_util.hh
GALigandDock / LigandConformer.ccid / TorsionID.hh
GALigandDock / LigandConformer.ccid / types.hh
GALigandDock / LigandConformer.ccpose / util.hh
GALigandDock / LigandConformer.hhpose / Pose.hh
GALigandDock / LigandConformer.hhconformation / Residue.hh
GALigandDock / LigandConformer.hhid / TorsionID.hh
GALigandDock / LigandConformer.hhtypes.hh
LigandDesign.ccchemical / ChemicalManager.hh
LigandDesign.ccconformation / Conformation.hh
LigandDesign.ccpose / Pose.hh
LigandDesign.ccconformation / Residue.hh
LigandDesign.ccchemical / ResidueTypeFinder.hh
LigandDesign.cctypes.hh
LigandDesign.ccpose / util.hh
LigandDesign.hhpose / Pose.fwd.hh
LigandDesign.hhconformation / Residue.fwd.hh
LigandDockProtocol.ccgrid / CartGrid.hh
LigandDockProtocol.ccconformation / Conformation.hh
LigandDockProtocol.cckinematics / Edge.hh
LigandDockProtocol.ccscoring / Energies.hh
LigandDockProtocol.cckinematics / FoldTree.hh
LigandDockProtocol.cckinematics / Jump.hh
LigandDockProtocol.ccoptimization / MinimizerOptions.hh
LigandDockProtocol.cckinematics / MoveMap.hh
LigandDockProtocol.ccpack / palette / NoDesignPackerPalette.hh
LigandDockProtocol.ccpack / task / PackerTask.hh
LigandDockProtocol.ccpose / Pose.hh
LigandDockProtocol.ccconformation / Residue.hh
LigandDockProtocol.ccscoring / rms_util.hh
LigandDockProtocol.ccpack / dunbrack / RotamerConstraint.hh
LigandDockProtocol.ccscoring / sasa.hh
LigandDockProtocol.ccscoring / ScoreFunction.hh
LigandDockProtocol.ccutil / SwitchResidueTypeSet.hh
LigandDockProtocol.ccpack / task / TaskFactory.hh
LigandDockProtocol.cctypes.hh
LigandDockProtocol.hhkinematics / MoveMap.fwd.hh
LigandDockProtocol.hhpose / Pose.fwd.hh
LigandDockProtocol.hhscoring / ScoreFunction.fwd.hh
MinimizeBackbone.cckinematics / tree / Atom.hh
MinimizeBackbone.cckinematics / AtomTree.hh
MinimizeBackbone.ccpose / chains_util.hh
MinimizeBackbone.ccscoring / constraints / CoordinateConstraint.hh
MinimizeBackbone.cckinematics / Edge.hh
MinimizeBackbone.cckinematics / FoldTree.hh
MinimizeBackbone.ccscoring / func / HarmonicFunc.hh
MinimizeBackbone.ccpose / Pose.hh
MinimizeBackbone.ccconformation / Residue.hh
MinimizeBackbone.cctypes.hh
MinimizeBackbone.ccpose / variant_util.hh
MinimizeBackbone.ccchemical / VariantType.hh
MinimizeBackbone.hhid / AtomID.fwd.hh
MinimizeBackbone.hhscoring / constraints / Constraint.fwd.hh
MinimizeBackbone.hhkinematics / Edge.fwd.hh
MinimizeBackbone.hhkinematics / FoldTree.fwd.hh
MinimizeLigand.ccpose / chains_util.hh
MinimizeLigand.ccconformation / Conformation.hh
MinimizeLigand.ccpose / Pose.hh
MinimizeLigand.cctypes.hh
MinimizeLigand.ccpose / util.hh
MolarMassFilter.ccpose / chains_util.hh
MolarMassFilter.ccconformation / Conformation.hh
MolarMassFilter.ccpose / Pose.hh
MolarMassFilter.cctypes.hh
MolarMassFilter.ccpose / util.hh
MolarMassFilter.hhtypes.hh
MolecularMassFilter.ccpose / chains_util.hh
MolecularMassFilter.ccconformation / Conformation.hh
MolecularMassFilter.ccpose / Pose.hh
MolecularMassFilter.cctypes.hh
MolecularMassFilter.ccpose / util.hh
MolecularMassFilter.hhtypes.hh
MoveMapBuilder.ccpose / chains_util.hh
MoveMapBuilder.ccconformation / Conformation.hh
MoveMapBuilder.cckinematics / Edge.hh
MoveMapBuilder.cckinematics / FoldTree.hh
MoveMapBuilder.cckinematics / MoveMap.hh
MoveMapBuilder.ccpose / Pose.hh
MoveMapBuilder.ccconformation / Residue.hh
MoveMapBuilder.cctypes.hh
MoveMapBuilder.ccpose / util.hh
MoveMapBuilder.hhkinematics / MoveMap.fwd.hh
MoveMapBuilder.hhpose / Pose.fwd.hh
MoveMapBuilder.hhtypes.hh
ProtLigEnsemble.ccchemical / AA.hh
ProtLigEnsemble.ccpose / chains_util.hh
ProtLigEnsemble.ccpack / palette / CustomBaseTypePackerPalette.hh
ProtLigEnsemble.ccscoring / Energies.hh
ProtLigEnsemble.ccoptimization / MinimizerOptions.hh
ProtLigEnsemble.cckinematics / MoveMap.hh
ProtLigEnsemble.ccselect / residue_selector / NeighborhoodResidueSelector.hh
ProtLigEnsemble.ccpack / task / operation / OperateOnResidueSubset.hh
ProtLigEnsemble.ccpack / palette / PackerPalette.hh
ProtLigEnsemble.ccpack / task / PackerTask.hh
ProtLigEnsemble.ccpose / PDBInfo.hh
ProtLigEnsemble.ccpose / Pose.hh
ProtLigEnsemble.ccpack / task / ResfileReader.hh
ProtLigEnsemble.ccconformation / Residue.hh
ProtLigEnsemble.ccchemical / ResidueType.hh
ProtLigEnsemble.ccchemical / ResidueTypeFinder.hh
ProtLigEnsemble.ccchemical / ResidueTypeSet.hh
ProtLigEnsemble.ccpack / task / operation / ResLvlTaskOperations.hh
ProtLigEnsemble.ccscoring / ScoreFunction.hh
ProtLigEnsemble.ccpack / task / TaskFactory.hh
ProtLigEnsemble.ccpack / task / operation / TaskOperations.hh
ProtLigEnsemble.cctypes.hh
ProtLigEnsemble.ccpack / rotamer_set / UnboundRotamersOperation.hh
ProtLigEnsemble.ccpose / util.hh
ProtLigEnsemble.hhpack / task / PackerTask.fwd.hh
ProtLigEnsemble.hhpose / Pose.fwd.hh
ProtLigEnsemble.hhscoring / ScoreFunction.fwd.hh
ProtLigEnsemble.hhpack / task / TaskFactory.fwd.hh
ProtLigEnsemble.hhtypes.hh
RandomConformerMover.ccpack / task / PackerTask.hh
RandomConformerMover.ccpose / Pose.hh
RandomConformerMover.ccconformation / Residue.hh
RandomConformerMover.ccchemical / ResidueType.hh
RandomConformerMover.ccpack / dunbrack / RotamerLibrary.hh
RandomConformerMover.ccscoring / ScoreFunction.hh
RandomConformerMover.ccpack / rotamers / SingleResidueRotamerLibrary.hh
RandomConformerMover.ccpack / rotamers / SingleResidueRotamerLibraryFactory.hh
RandomConformerMover.ccpack / task / TaskFactory.hh
RandomConformers.ccpose / chains_util.hh
RandomConformers.ccconformation / Conformation.hh
RandomConformers.ccpose / Pose.hh
RandomConformers.cctypes.hh
RandomConformers.ccpose / util.hh
rdf / RDFBase.hhconformation / Atom.hh
rdf / RDFBase.hhid / AtomID.hh
rdf / RDFBase.hhchemical / AtomType.hh
rdf / RDFBase.hhpose / Pose.fwd.hh
rdf / RDFBase.hhtypes.hh
rdf / RDFFunctionFactory.ccscoring / ScoreFunction.fwd.hh
rdf / RDFFunctionFactory.hhpose / Pose.fwd.hh
ResidueTorsionRestraints.ccid / AtomID.hh
ResidueTorsionRestraints.ccchemical / AtomType.hh
ResidueTorsionRestraints.ccscoring / func / CircularHarmonicFunc.hh
ResidueTorsionRestraints.ccscoring / constraints / ConstraintSet.hh
ResidueTorsionRestraints.ccscoring / constraints / DihedralConstraint.hh
ResidueTorsionRestraints.ccscoring / func / Func.hh
ResidueTorsionRestraints.ccpose / Pose.hh
ResidueTorsionRestraints.ccconformation / Residue.hh
ResidueTorsionRestraints.hhscoring / constraints / Constraint.fwd.hh
ResidueTorsionRestraints.hhscoring / constraints / ConstraintSet.fwd.hh
ResidueTorsionRestraints.hhpose / Pose.fwd.hh
ResidueTorsionRestraints.hhtypes.hh
RigidSearchMover.ccconformation / Conformation.hh
RigidSearchMover.cckinematics / Jump.hh
RigidSearchMover.ccpose / Pose.hh
RigidSearchMover.ccscoring / ScoreFunction.hh
RigidSearchMover.cckinematics / Stub.hh
RigidSearchMover.hhpose / Pose.fwd.hh
RigidSearchMover.hhscoring / ScoreFunction.fwd.hh
GALigandDock / RotamerData.ccscoring / lkball / LK_BallInfo.hh
GALigandDock / RotamerData.ccpose / Pose.hh
GALigandDock / RotamerData.ccconformation / Residue.hh
GALigandDock / RotamerData.cctypes.hh
GALigandDock / RotamerData.hhscoring / lkball / LK_BallInfo.hh
GALigandDock / RotamerData.hhpose / Pose.hh
GALigandDock / RotamerData.hhconformation / Residue.hh
GALigandDock / RotamerData.hhtypes.hh
Rotate.ccpose / chains_util.hh
Rotate.ccconformation / Conformation.hh
Rotate.ccpack / palette / NoDesignPackerPalette.hh
Rotate.ccpack / task / PackerTask.hh
Rotate.ccpose / Pose.hh
Rotate.ccconformation / Residue.hh
Rotate.ccscoring / rms_util.tmpl.hh
Rotate.ccpack / task / TaskFactory.hh
Rotate.cctypes.hh
Rotate.ccpose / util.hh
Rotate.hhgrid / CartGrid.fwd.hh
Rotate.hhkinematics / Jump.hh
Rotate.hhconformation / Residue.fwd.hh
Rotates.ccpose / chains_util.hh
Rotates.cctypes.hh
Rotates.ccpose / util.hh
SlideTogether.ccpose / chains_util.hh
SlideTogether.cctypes.hh
SlideTogether.ccpose / util.hh
rdf / StandardRDFFunctions.ccconformation / Conformation.hh
rdf / StandardRDFFunctions.ccscoring / etable / coulomb / Coulomb.hh
rdf / StandardRDFFunctions.ccscoring / EnergyMap.hh
rdf / StandardRDFFunctions.ccscoring / methods / EnergyMethodOptions.hh
rdf / StandardRDFFunctions.ccscoring / etable / Etable.hh
rdf / StandardRDFFunctions.ccscoring / etable / EtableEnergy.hh
rdf / StandardRDFFunctions.ccscoring / hbonds / HBondSet.hh
rdf / StandardRDFFunctions.ccscoring / orbitals / OrbitalsScore.hh
rdf / StandardRDFFunctions.ccchemical / orbitals / OrbitalType.hh
rdf / StandardRDFFunctions.ccpose / Pose.hh
rdf / StandardRDFFunctions.ccconformation / Residue.hh
rdf / StandardRDFFunctions.ccscoring / ScoreFunction.hh
rdf / StandardRDFFunctions.ccscoring / ScoringManager.hh
rdf / StandardRDFFunctions.hhscoring / etable / coulomb / Coulomb.fwd.hh
rdf / StandardRDFFunctions.hhscoring / etable / EtableEnergy.fwd.hh
rdf / StandardRDFFunctions.hhscoring / hbonds / HBondSet.fwd.hh
rdf / StandardRDFFunctions.hhscoring / orbitals / OrbitalsScore.fwd.hh
rdf / StandardRDFFunctions.hhpose / Pose.fwd.hh
StartFrom.ccio / AtomInformation.hh
StartFrom.ccchemical / AtomType.hh
StartFrom.ccio / pdb / build_pose_as_is.hh
StartFrom.ccpose / chains_util.hh
StartFrom.ccio / pdb / pdb_reader.hh
StartFrom.ccio / pose_from_sfr / PoseFromSFRBuilder.hh
StartFrom.ccio / ResidueInformation.hh
StartFrom.cctypes.hh
StartFrom.ccpose / util.hh
StartFrom.hhpose / Pose.fwd.hh
StartFrom.hhtypes.hh
TetherLigand.cckinematics / tree / Atom.hh
TetherLigand.cckinematics / AtomTree.hh
TetherLigand.ccpose / chains_util.hh
TetherLigand.ccconformation / Conformation.hh
TetherLigand.ccscoring / constraints / CoordinateConstraint.hh
TetherLigand.ccscoring / func / HarmonicFunc.hh
TetherLigand.ccpose / Pose.hh
TetherLigand.cctypes.hh
TetherLigand.ccpose / util.hh
TetherLigand.hhscoring / constraints / Constraint.fwd.hh
GALigandDock / TorsionSampler.ccscoring / GenericBondedPotential.fwd.hh
GALigandDock / TorsionSampler.ccscoring / GenericBondedPotential.hh
GALigandDock / TorsionSampler.hhchemical / Bond.fwd.hh
GALigandDock / TorsionSampler.hhchemical / ChemicalManager.hh
GALigandDock / TorsionSampler.hhtypes.hh
Transform.ccpose / chains_util.hh
Transform.ccconformation / Conformation.hh
Transform.ccscoring / constraints / ConstraintIO.hh
Transform.ccscoring / constraints / ConstraintSet.hh
Transform.ccimport_pose / import_pose.hh
Transform.cckinematics / Jump.hh
Transform.ccpack / palette / NoDesignPackerPalette.hh
Transform.ccpack / task / PackerTask.hh
Transform.ccpose / PDBInfo.hh
Transform.ccpose / Pose.hh
Transform.ccchemical / ResidueType.hh
Transform.ccscoring / ScoreFunction.hh
Transform.ccscoring / ScoreFunctionFactory.hh
Transform.ccscoring / ScoreType.hh
Transform.ccpack / task / TaskFactory.hh
Transform.ccconformation / UltraLightResidue.hh
Transform.ccpose / util.hh
Transform.hhkinematics / Jump.fwd.hh
Transform.hhconformation / Residue.fwd.hh
Transform.hhscoring / ScoreFunction.fwd.hh
Transform.hhconformation / UltraLightResidue.fwd.hh
TransformEnsemble.ccpose / chains_util.hh
TransformEnsemble.ccconformation / Conformation.hh
TransformEnsemble.ccimport_pose / import_pose.hh
TransformEnsemble.cckinematics / Jump.hh
TransformEnsemble.ccpack / palette / NoDesignPackerPalette.hh
TransformEnsemble.ccpack / task / PackerTask.hh
TransformEnsemble.ccpose / PDBInfo.hh
TransformEnsemble.ccpose / Pose.hh
TransformEnsemble.ccchemical / ResidueType.hh
TransformEnsemble.ccpack / task / TaskFactory.hh
TransformEnsemble.ccconformation / UltraLightResidue.hh
TransformEnsemble.ccpose / util.hh
TransformEnsemble.hhkinematics / Jump.fwd.hh
TransformEnsemble.hhconformation / Residue.fwd.hh
TransformEnsemble.hhconformation / UltraLightResidue.fwd.hh
Translate.ccpose / chains_util.hh
Translate.ccconformation / Conformation.hh
Translate.ccpose / Pose.hh
Translate.ccconformation / Residue.hh
Translate.cctypes.hh
Translate.ccpose / util.hh
Translate.hhgrid / CartGrid.fwd.hh
UnconstrainedTorsionsMover.hhpose / Pose.fwd.hh
GALigandDock / util.ccchemical / AA.hh
util.ccpose / chains_util.hh
GALigandDock / util.ccscoring / Energies.hh
GALigandDock / util.ccscoring / EnergyGraph.hh
util.ccpose / Pose.hh
GALigandDock / util.ccpose / Pose.hh
GALigandDock / util.ccconformation / Residue.hh
GALigandDock / util.ccscoring / TwelveANeighborGraph.hh
util.cctypes.hh
GALigandDock / util.cctypes.hh
util.ccpose / util.hh
util.hhpose / Pose.fwd.hh
GALigandDock / util.hhpose / Pose.hh
util.hhtypes.hh
GALigandDock / util.hhtypes.hh
WriteLigandMolFile.ccpose / chains_util.hh
WriteLigandMolFile.ccconformation / Conformation.hh
WriteLigandMolFile.ccchemical / sdf / mol_writer.hh
WriteLigandMolFile.ccpose / Pose.hh
WriteLigandMolFile.ccpose / util.hh
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