membrane → core Relation

File in src/protocols/membrane	Includes file in src/core
AddMembraneMover.cc	chemical / ChemicalManager.hh
AddMembraneMover.cc	conformation / Conformation.hh
AddMembraneMover.cc	kinematics / FoldTree.hh
AddMembraneMover.cc	conformation / membrane / ImplicitLipidInfo.hh
AddMembraneMover.cc	conformation / membrane / MembraneInfo.hh
AddMembraneMover.cc	conformation / membrane / MembraneParams.hh
AddMembraneMover.cc	pose / PDBInfo.hh
AddMembraneMover.cc	pose / PDBPoseMap.hh
AddMembraneMover.cc	pose / Pose.hh
AddMembraneMover.cc	conformation / Residue.hh
AddMembraneMover.cc	conformation / ResidueFactory.hh
AddMembraneMover.cc	pose / ResidueIndexDescription.hh
AddMembraneMover.cc	chemical / ResidueProperty.hh
AddMembraneMover.cc	chemical / ResidueTypeSet.hh
AddMembraneMover.cc	scoring / ScoreFunction.hh
AddMembraneMover.cc	scoring / ScoreFunctionFactory.hh
AddMembraneMover.cc	pose / selection.hh
AddMembraneMover.cc	conformation / membrane / Span.hh
AddMembraneMover.cc	conformation / membrane / SpanningTopology.hh
AddMembraneMover.cc	types.hh
AddMembraneMover.cc	pose / util.hh
AddMembraneMover.hh	pose / Pose.fwd.hh
AddMembraneMover.hh	pose / ResidueIndexDescription.fwd.hh
AddMembraneMover.hh	conformation / membrane / Span.hh
AddMembraneMover.hh	conformation / membrane / SpanningTopology.fwd.hh
AddMembraneMover.hh	types.hh
AddMembraneSpanConstraint.cc	conformation / Conformation.hh
AddMembraneSpanConstraint.cc	scoring / constraints / Constraint.hh
AddMembraneSpanConstraint.cc	scoring / constraints / ConstraintSet.hh
AddMembraneSpanConstraint.cc	scoring / func / LinearPenaltyFunction.hh
AddMembraneSpanConstraint.cc	conformation / membrane / MembraneInfo.hh
AddMembraneSpanConstraint.cc	scoring / constraints / MembraneSpanConstraint.hh
AddMembraneSpanConstraint.cc	pose / Pose.hh
AddMembraneSpanConstraint.cc	pose / util.hh
AddMembraneSpanConstraint.hh	pose / Pose.fwd.hh
AddMembraneSpanConstraint.hh	types.hh
AddMembraneSpanTermZConstraint.cc	conformation / Conformation.hh
AddMembraneSpanTermZConstraint.cc	scoring / constraints / Constraint.hh
AddMembraneSpanTermZConstraint.cc	scoring / constraints / ConstraintSet.hh
AddMembraneSpanTermZConstraint.cc	scoring / func / LinearPenaltyFunction.hh
AddMembraneSpanTermZConstraint.cc	conformation / membrane / MembraneInfo.hh
AddMembraneSpanTermZConstraint.cc	scoring / constraints / MembraneSpanTermZConstraint.hh
AddMembraneSpanTermZConstraint.cc	pose / Pose.hh
AddMembraneSpanTermZConstraint.cc	pose / util.hh
AddMembraneSpanTermZConstraint.hh	pose / Pose.fwd.hh
AddMembraneSpanTermZConstraint.hh	types.hh
AddMPLigandMover.cc	pose / chains_util.hh
AddMPLigandMover.cc	conformation / Conformation.hh
AddMPLigandMover.cc	kinematics / FoldTree.hh
AddMPLigandMover.cc	conformation / membrane / MembraneInfo.hh
AddMPLigandMover.cc	pose / Pose.hh
AddMPLigandMover.cc	types.hh
AddMPLigandMover.cc	pose / util.hh
AddMPLigandMover.hh	pose / Pose.hh
AddMPLigandMover.hh	types.hh
AqueousPoreFinder.cc	chemical / AA.hh
AqueousPoreFinder.cc	conformation / membrane / AqueousPoreParameters.hh
AqueousPoreFinder.cc	conformation / Conformation.hh
AqueousPoreFinder.cc	conformation / membrane / ImplicitLipidInfo.hh
AqueousPoreFinder.cc	conformation / membrane / MembraneInfo.hh
AqueousPoreFinder.cc	pose / PDBInfo.hh
AqueousPoreFinder.cc	pose / Pose.hh
AqueousPoreFinder.cc	conformation / membrane / SpanningTopology.hh
AqueousPoreFinder.cc	pose / util.hh
AqueousPoreFinder.hh	conformation / membrane / AqueousPoreParameters.hh
AqueousPoreFinder.hh	pose / Pose.fwd.hh
AqueousPoreFinder.hh	types.hh
geometry / Embedding.cc	conformation / membrane / Exceptions.hh
geometry / Embedding.cc	pose / Pose.hh
geometry / Embedding.cc	conformation / Residue.hh
geometry / Embedding.cc	conformation / membrane / Span.hh
geometry / Embedding.cc	conformation / membrane / SpanningTopology.hh
geometry / Embedding.cc	types.hh
geometry / Embedding.hh	pose / Pose.fwd.hh
geometry / Embedding.hh	conformation / membrane / Span.hh
geometry / Embedding.hh	conformation / membrane / SpanningTopology.hh
geometry / Embedding.hh	types.hh
geometry / EmbeddingDef.cc	conformation / membrane / Exceptions.hh
geometry / EmbeddingDef.cc	conformation / Residue.hh
geometry / EmbeddingDef.cc	types.hh
geometry / EmbeddingDef.hh	pose / Pose.hh
geometry / EmbeddingDef.hh	types.hh
scoring / FaWaterToBilayerEnergy.cc	conformation / Atom.hh
scoring / FaWaterToBilayerEnergy.cc	id / AtomID.hh
scoring / FaWaterToBilayerEnergy.cc	conformation / Conformation.hh
scoring / FaWaterToBilayerEnergy.cc	scoring / methods / ContextDependentOneBodyEnergy.hh
scoring / FaWaterToBilayerEnergy.cc	scoring / EnergyMap.hh
scoring / FaWaterToBilayerEnergy.cc	scoring / methods / EnergyMethodOptions.hh
scoring / FaWaterToBilayerEnergy.cc	conformation / membrane / ImplicitLipidInfo.hh
scoring / FaWaterToBilayerEnergy.cc	conformation / membrane / MembraneInfo.hh
scoring / FaWaterToBilayerEnergy.cc	pose / Pose.hh
scoring / FaWaterToBilayerEnergy.cc	conformation / Residue.hh
scoring / FaWaterToBilayerEnergy.cc	scoring / ScoreFunction.hh
scoring / FaWaterToBilayerEnergy.cc	scoring / ScoringManager.hh
scoring / FaWaterToBilayerEnergy.cc	pose / util.hh
scoring / FaWaterToBilayerEnergy.hh	conformation / Atom.fwd.hh
scoring / FaWaterToBilayerEnergy.hh	conformation / Conformation.fwd.hh
scoring / FaWaterToBilayerEnergy.hh	scoring / methods / ContextDependentOneBodyEnergy.hh
scoring / FaWaterToBilayerEnergy.hh	pose / Pose.fwd.hh
scoring / FaWaterToBilayerEnergy.hh	scoring / ScoreFunction.fwd.hh
scoring / FaWaterToBilayerEnergyCreator.hh	scoring / methods / EnergyMethod.fwd.hh
scoring / FaWaterToBilayerEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
scoring / FaWaterToBilayerEnergyCreator.hh	scoring / methods / EnergyMethodOptions.fwd.hh
FlipMover.cc	conformation / Conformation.hh
FlipMover.cc	kinematics / FoldTree.hh
FlipMover.cc	conformation / membrane / MembraneInfo.hh
FlipMover.cc	pose / Pose.hh
FlipMover.cc	types.hh
FlipMover.cc	pose / util.hh
FlipMover.hh	pose / Pose.fwd.hh
FlipMover.hh	types.hh
benchmark / MakeCanonicalHelix.cc	pose / Pose.hh
benchmark / MakeCanonicalHelix.cc	types.hh
benchmark / MakeCanonicalHelix.cc	pose / util.hh
benchmark / MakeCanonicalHelix.hh	pose / Pose.hh
MembranePositionFromTopologyMover.cc	conformation / Conformation.hh
MembranePositionFromTopologyMover.cc	conformation / membrane / MembraneInfo.hh
MembranePositionFromTopologyMover.cc	pose / Pose.hh
MembranePositionFromTopologyMover.cc	conformation / Residue.hh
MembranePositionFromTopologyMover.cc	conformation / membrane / Span.hh
MembranePositionFromTopologyMover.cc	conformation / membrane / SpanningTopology.hh
MembranePositionFromTopologyMover.cc	types.hh
MembranePositionFromTopologyMover.hh	pose / Pose.fwd.hh
MembranePositionFromTopologyMover.hh	conformation / membrane / Span.hh
MembranePositionFromTopologyMover.hh	types.hh
scoring / MEnvAtomParams.hh	types.hh
MPLipidAccessibility.cc	id / AtomID.hh
MPLipidAccessibility.cc	id / AtomID_Map.hh
MPLipidAccessibility.cc	conformation / Conformation.hh
MPLipidAccessibility.cc	membrane / hull.hh
MPLipidAccessibility.cc	conformation / membrane / ImplicitLipidInfo.hh
MPLipidAccessibility.cc	conformation / membrane / MembraneInfo.hh
MPLipidAccessibility.cc	pose / PDBInfo.hh
MPLipidAccessibility.cc	pose / Pose.hh
MPLipidAccessibility.cc	conformation / membrane / Span.hh
MPLipidAccessibility.cc	conformation / membrane / SpanningTopology.hh
MPLipidAccessibility.cc	types.hh
MPLipidAccessibility.cc	pose / util.hh
MPLipidAccessibility.hh	pose / Pose.fwd.hh
MPQuickRelaxMover.cc	optimization / AtomTreeMinimizer.hh
MPQuickRelaxMover.cc	scoring / constraints / ConstraintIO.hh
MPQuickRelaxMover.cc	scoring / constraints / ConstraintSet.hh
MPQuickRelaxMover.cc	scoring / Energies.hh
MPQuickRelaxMover.cc	scoring / EnergyMap.hh
MPQuickRelaxMover.cc	import_pose / import_pose.hh
MPQuickRelaxMover.cc	optimization / MinimizerOptions.hh
MPQuickRelaxMover.cc	kinematics / MoveMap.hh
MPQuickRelaxMover.cc	pack / pack_rotamers.hh
MPQuickRelaxMover.cc	pose / Pose.hh
MPQuickRelaxMover.cc	scoring / rms_util.hh
MPQuickRelaxMover.cc	scoring / ScoreFunction.hh
MPQuickRelaxMover.cc	scoring / ScoreFunctionFactory.hh
MPQuickRelaxMover.cc	scoring / ScoreType.hh
MPQuickRelaxMover.cc	pack / task / TaskFactory.hh
MPQuickRelaxMover.cc	types.hh
MPQuickRelaxMover.cc	pose / util.hh
MPQuickRelaxMover.hh	kinematics / MoveMap.fwd.hh
MPQuickRelaxMover.hh	pose / Pose.fwd.hh
MPQuickRelaxMover.hh	scoring / ScoreFunction.fwd.hh
MPQuickRelaxMover.hh	types.hh
OptimizeMembranePositionMover.cc	conformation / Conformation.hh
OptimizeMembranePositionMover.cc	kinematics / FoldTree.hh
OptimizeMembranePositionMover.cc	conformation / membrane / MembraneInfo.hh
OptimizeMembranePositionMover.cc	pose / Pose.hh
OptimizeMembranePositionMover.cc	scoring / ScoreFunctionFactory.hh
OptimizeMembranePositionMover.cc	types.hh
OptimizeMembranePositionMover.cc	pose / util.hh
OptimizeMembranePositionMover.hh	kinematics / FoldTree.hh
OptimizeMembranePositionMover.hh	pose / Pose.fwd.hh
OptimizeMembranePositionMover.hh	scoring / ScoreFunction.hh
OptimizeMembranePositionMover.hh	types.hh
OptimizeProteinEmbeddingMover.cc	conformation / Conformation.hh
OptimizeProteinEmbeddingMover.cc	kinematics / FoldTree.hh
OptimizeProteinEmbeddingMover.cc	conformation / membrane / MembraneInfo.hh
OptimizeProteinEmbeddingMover.cc	pose / Pose.hh
OptimizeProteinEmbeddingMover.cc	types.hh
OptimizeProteinEmbeddingMover.cc	pose / util.hh
OptimizeProteinEmbeddingMover.hh	pose / Pose.fwd.hh
OptimizeProteinEmbeddingMover.hh	types.hh
RandomMembranePositionMover.cc	conformation / Conformation.hh
RandomMembranePositionMover.cc	conformation / membrane / MembraneInfo.hh
RandomMembranePositionMover.cc	pose / Pose.hh
RandomMembranePositionMover.cc	types.hh
RandomMembranePositionMover.hh	pose / Pose.fwd.hh
RandomMembranePositionMover.hh	types.hh
benchmark / SampleTiltAngles.cc	conformation / Conformation.hh
benchmark / SampleTiltAngles.cc	conformation / membrane / MembraneInfo.hh
benchmark / SampleTiltAngles.cc	pose / Pose.hh
benchmark / SampleTiltAngles.cc	scoring / ScoreFunction.hh
benchmark / SampleTiltAngles.cc	scoring / ScoreFunctionFactory.hh
benchmark / SampleTiltAngles.cc	types.hh
benchmark / SampleTiltAngles.cc	pose / util.hh
benchmark / SampleTiltAngles.hh	pose / Pose.hh
benchmark / SampleTiltAngles.hh	scoring / ScoreFunction.fwd.hh
SetMembranePositionMover.cc	conformation / Conformation.hh
SetMembranePositionMover.cc	kinematics / Jump.hh
SetMembranePositionMover.cc	conformation / membrane / MembraneInfo.hh
SetMembranePositionMover.cc	pose / Pose.hh
SetMembranePositionMover.cc	kinematics / Stub.hh
SetMembranePositionMover.cc	types.hh
SetMembranePositionMover.hh	pose / Pose.fwd.hh
SetMembranePositionMover.hh	types.hh
SpinAroundPartnerMover.cc	conformation / Conformation.hh
SpinAroundPartnerMover.cc	conformation / membrane / MembraneInfo.hh
SpinAroundPartnerMover.cc	pose / Pose.hh
SpinAroundPartnerMover.cc	types.hh
SpinAroundPartnerMover.cc	pose / util.hh
SpinAroundPartnerMover.hh	pose / Pose.fwd.hh
SpinAroundPartnerMover.hh	types.hh
symmetry / SymmetricAddMembraneMover.cc	chemical / ChemicalManager.hh
symmetry / SymmetricAddMembraneMover.cc	conformation / Conformation.hh
symmetry / SymmetricAddMembraneMover.cc	kinematics / FoldTree.hh
symmetry / SymmetricAddMembraneMover.cc	conformation / membrane / MembraneInfo.hh
symmetry / SymmetricAddMembraneMover.cc	conformation / membrane / MembraneParams.hh
symmetry / SymmetricAddMembraneMover.cc	pose / PDBInfo.hh
symmetry / SymmetricAddMembraneMover.cc	pose / Pose.hh
symmetry / SymmetricAddMembraneMover.cc	conformation / Residue.hh
symmetry / SymmetricAddMembraneMover.cc	conformation / ResidueFactory.hh
symmetry / SymmetricAddMembraneMover.cc	chemical / ResidueTypeSet.hh
symmetry / SymmetricAddMembraneMover.cc	conformation / membrane / Span.hh
symmetry / SymmetricAddMembraneMover.cc	conformation / membrane / SpanningTopology.hh
symmetry / SymmetricAddMembraneMover.cc	conformation / symmetry / SymmData.hh
symmetry / SymmetricAddMembraneMover.cc	conformation / symmetry / SymmetricConformation.hh
symmetry / SymmetricAddMembraneMover.cc	conformation / symmetry / SymmetryInfo.hh
symmetry / SymmetricAddMembraneMover.cc	types.hh
symmetry / SymmetricAddMembraneMover.cc	pose / symmetry / util.hh
symmetry / SymmetricAddMembraneMover.cc	conformation / symmetry / util.hh
symmetry / SymmetricAddMembraneMover.hh	pose / Pose.hh
symmetry / SymmetricAddMembraneMover.hh	types.hh
TiltMover.cc	conformation / Conformation.hh
TiltMover.cc	conformation / membrane / MembraneInfo.hh
TiltMover.cc	pose / Pose.hh
TiltMover.cc	conformation / membrane / SpanningTopology.hh
TiltMover.cc	types.hh
TiltMover.cc	pose / util.hh
TiltMover.hh	pose / Pose.fwd.hh
TiltMover.hh	types.hh
TransformIntoMembraneMover.cc	conformation / Conformation.hh
TransformIntoMembraneMover.cc	kinematics / FoldTree.hh
TransformIntoMembraneMover.cc	conformation / membrane / MembraneInfo.hh
TransformIntoMembraneMover.cc	pose / Pose.hh
TransformIntoMembraneMover.cc	types.hh
TransformIntoMembraneMover.hh	pose / Pose.fwd.hh
TransformIntoMembraneMover.hh	types.hh
TranslationRotationMover.cc	conformation / Conformation.hh
TranslationRotationMover.cc	kinematics / FoldTree.hh
TranslationRotationMover.cc	kinematics / Jump.hh
TranslationRotationMover.cc	conformation / membrane / MembraneInfo.hh
TranslationRotationMover.cc	pose / Pose.hh
TranslationRotationMover.cc	conformation / Residue.hh
TranslationRotationMover.cc	conformation / membrane / Span.hh
TranslationRotationMover.cc	conformation / membrane / SpanningTopology.hh
TranslationRotationMover.cc	kinematics / Stub.hh
TranslationRotationMover.cc	types.hh
TranslationRotationMover.hh	conformation / Conformation.fwd.hh
TranslationRotationMover.hh	kinematics / FoldTree.fwd.hh
TranslationRotationMover.hh	kinematics / Jump.fwd.hh
TranslationRotationMover.hh	conformation / membrane / MembraneInfo.fwd.hh
TranslationRotationMover.hh	pose / Pose.fwd.hh
TranslationRotationMover.hh	conformation / Residue.fwd.hh
TranslationRotationMover.hh	conformation / membrane / Span.fwd.hh
TranslationRotationMover.hh	conformation / membrane / SpanningTopology.fwd.hh
TranslationRotationMover.hh	kinematics / Stub.fwd.hh
TranslationRotationMover.hh	types.hh
util.cc	id / AtomID.hh
util.cc	id / AtomID_Map.hh
util.cc	pose / chains_util.hh
util.cc	chemical / ChemicalManager.hh
symmetry / util.cc	conformation / Conformation.hh
util.cc	conformation / Conformation.hh
util.cc	kinematics / Edge.hh
util.cc	conformation / membrane / Exceptions.hh
util.cc	kinematics / FoldTree.hh
util.cc	conformation / membrane / MembraneInfo.hh
util.cc	id / NamedAtomID.hh
symmetry / util.cc	pose / Pose.hh
util.cc	pose / Pose.hh
util.cc	conformation / Residue.hh
util.cc	conformation / ResidueFactory.hh
util.cc	chemical / ResidueTypeSet.hh
util.cc	scoring / rms_util.hh
util.cc	scoring / rms_util.tmpl.hh
symmetry / util.cc	conformation / membrane / Span.hh
util.cc	conformation / membrane / Span.hh
symmetry / util.cc	conformation / membrane / SpanningTopology.hh
util.cc	conformation / membrane / SpanningTopology.hh
util.cc	pose / subpose_manipulation_util.hh
symmetry / util.cc	conformation / symmetry / SymmetricConformation.hh
symmetry / util.cc	conformation / symmetry / SymmetryInfo.hh
symmetry / util.cc	types.hh
util.cc	types.hh
symmetry / util.cc	pose / symmetry / util.hh
util.cc	pose / util.hh
util.hh	chemical / ChemicalManager.fwd.hh
util.hh	conformation / Conformation.fwd.hh
util.hh	kinematics / FoldTree.fwd.hh
util.hh	conformation / membrane / MembraneInfo.fwd.hh
symmetry / util.hh	pose / Pose.hh
util.hh	pose / Pose.hh
util.hh	conformation / Residue.fwd.hh
util.hh	conformation / ResidueFactory.hh
util.hh	chemical / ResidueTypeSet.fwd.hh
symmetry / util.hh	conformation / membrane / SpanningTopology.hh
util.hh	conformation / membrane / SpanningTopology.hh
symmetry / util.hh	types.hh
util.hh	types.hh
visualize / VisualizeEmbeddingMover.cc	chemical / ChemicalManager.hh
visualize / VisualizeEmbeddingMover.cc	conformation / Conformation.hh
visualize / VisualizeEmbeddingMover.cc	conformation / membrane / MembraneInfo.hh
visualize / VisualizeEmbeddingMover.cc	pose / Pose.hh
visualize / VisualizeEmbeddingMover.cc	conformation / Residue.hh
visualize / VisualizeEmbeddingMover.cc	conformation / ResidueFactory.hh
visualize / VisualizeEmbeddingMover.cc	chemical / ResidueTypeSet.hh
visualize / VisualizeEmbeddingMover.cc	types.hh
visualize / VisualizeEmbeddingMover.hh	pose / Pose.fwd.hh
visualize / VisualizeEmbeddingMover.hh	conformation / Residue.fwd.hh
visualize / VisualizeEmbeddingMover.hh	types.hh
visualize / VisualizeMembraneMover.cc	chemical / ChemicalManager.hh
visualize / VisualizeMembraneMover.cc	conformation / Conformation.hh
visualize / VisualizeMembraneMover.cc	conformation / membrane / MembraneInfo.hh
visualize / VisualizeMembraneMover.cc	pose / Pose.hh
visualize / VisualizeMembraneMover.cc	conformation / Residue.hh
visualize / VisualizeMembraneMover.cc	conformation / ResidueFactory.hh
visualize / VisualizeMembraneMover.cc	chemical / ResidueTypeSet.hh
visualize / VisualizeMembraneMover.cc	types.hh
visualize / VisualizeMembraneMover.hh	pose / Pose.fwd.hh
visualize / VisualizeMembraneMover.hh	conformation / Residue.fwd.hh
visualize / VisualizeMembraneMover.hh	types.hh