protein_interface_design → core Relation

File in src/protocols/protein_interface_design	Includes file in src/core
movers / AddChainBreak.cc	kinematics / FoldTree.hh
movers / AddChainBreak.cc	pose / Pose.hh
movers / AddChainBreak.cc	pose / selection.hh
movers / AddChainBreak.cc	pose / variant_util.hh
movers / AddChainBreak.cc	chemical / VariantType.hh
movers / AddChainBreak.hh	pose / Pose.fwd.hh
movers / AddChainBreak.hh	types.hh
movers / AddSidechainConstraintsToHotspots.cc	conformation / Conformation.hh
movers / AddSidechainConstraintsToHotspots.cc	scoring / constraints / Constraint.hh
movers / AddSidechainConstraintsToHotspots.cc	kinematics / FoldTree.hh
movers / AddSidechainConstraintsToHotspots.cc	pose / Pose.hh
movers / AddSidechainConstraintsToHotspots.cc	conformation / Residue.hh
movers / AddSidechainConstraintsToHotspots.cc	select / residue_selector / ResidueSelector.hh
movers / AddSidechainConstraintsToHotspots.cc	pose / selection.hh
movers / AddSidechainConstraintsToHotspots.cc	select / util.hh
movers / AddSidechainConstraintsToHotspots.hh	pose / Pose.fwd.hh
movers / AddSidechainConstraintsToHotspots.hh	select / residue_selector / ResidueSelector.fwd.hh
movers / AddSidechainConstraintsToHotspots.hh	types.hh
filters / AtomicContactCountFilter.cc	chemical / AtomType.hh
filters / AtomicContactCountFilter.cc	conformation / Conformation.hh
filters / AtomicContactCountFilter.cc	scoring / dssp / Dssp.hh
filters / AtomicContactCountFilter.cc	kinematics / FoldTree.hh
filters / AtomicContactCountFilter.cc	pack / make_symmetric_task.hh
filters / AtomicContactCountFilter.cc	pose / Pose.hh
filters / AtomicContactCountFilter.cc	conformation / Residue.hh
filters / AtomicContactCountFilter.cc	scoring / ScoreFunction.hh
filters / AtomicContactCountFilter.cc	scoring / ScoreType.hh
filters / AtomicContactCountFilter.cc	conformation / symmetry / SymmetryInfo.hh
filters / AtomicContactCountFilter.cc	pack / task / TaskFactory.hh
filters / AtomicContactCountFilter.cc	pack / task / operation / TaskOperation.hh
filters / AtomicContactCountFilter.cc	types.hh
filters / AtomicContactCountFilter.cc	pose / symmetry / util.hh
filters / AtomicContactCountFilter.hh	pose / Pose.fwd.hh
filters / AtomicContactCountFilter.hh	scoring / ScoreFunction.hh
filters / AtomicContactCountFilter.hh	scoring / ScoreType.hh
filters / AtomicContactCountFilter.hh	pack / task / TaskFactory.fwd.hh
filters / AtomicContactCountFilter.hh	types.hh
filters / AverageDegreeFilter.cc	conformation / Conformation.hh
filters / AverageDegreeFilter.cc	pack / task / PackerTask.hh
filters / AverageDegreeFilter.cc	pose / Pose.hh
filters / AverageDegreeFilter.cc	conformation / Residue.hh
filters / AverageDegreeFilter.cc	pack / task / TaskFactory.hh
filters / AverageDegreeFilter.hh	pose / Pose.fwd.hh
filters / AverageDegreeFilter.hh	pack / task / TaskFactory.fwd.hh
movers / BackrubDDMover.cc	conformation / Conformation.hh
movers / BackrubDDMover.cc	kinematics / Edge.hh
movers / BackrubDDMover.cc	scoring / methods / EnergyMethodOptions.hh
movers / BackrubDDMover.cc	kinematics / FoldTree.hh
movers / BackrubDDMover.cc	kinematics / MoveMap.hh
movers / BackrubDDMover.cc	pack / task / operation / NoRepackDisulfides.hh
movers / BackrubDDMover.cc	pack / task / operation / OperateOnCertainResidues.hh
movers / BackrubDDMover.cc	pack / task / PackerTask.hh
movers / BackrubDDMover.cc	pose / Pose.hh
movers / BackrubDDMover.cc	select / residue_selector / ResidueIndexSelector.hh
movers / BackrubDDMover.cc	select / residue_selector / ResidueSelector.hh
movers / BackrubDDMover.cc	select / residue_selector / ResidueSpanSelector.hh
movers / BackrubDDMover.cc	pack / task / operation / ResLvlTaskOperations.hh
movers / BackrubDDMover.cc	scoring / ScoreFunction.hh
movers / BackrubDDMover.cc	pose / selection.hh
movers / BackrubDDMover.cc	pack / task / TaskFactory.hh
movers / BackrubDDMover.cc	pack / task / operation / TaskOperations.hh
movers / BackrubDDMover.cc	types.hh
movers / BackrubDDMover.cc	select / util.hh
movers / BackrubDDMover.cc	select / residue_selector / util.hh
movers / BackrubDDMover.hh	pose / Pose.fwd.hh
movers / BackrubDDMover.hh	select / residue_selector / ResidueSelector.fwd.hh
movers / BackrubDDMover.hh	types.hh
movers / BestHotspotCstMover.cc	id / AtomID.hh
movers / BestHotspotCstMover.cc	pack / task / PackerTask.hh
movers / BestHotspotCstMover.cc	pose / PDBInfo.hh
movers / BestHotspotCstMover.cc	pose / PDBPoseMap.hh
movers / BestHotspotCstMover.cc	pose / Pose.hh
movers / BestHotspotCstMover.cc	conformation / Residue.hh
movers / BestHotspotCstMover.cc	scoring / ScoreFunction.hh
movers / BestHotspotCstMover.cc	scoring / ScoreFunctionFactory.hh
movers / BestHotspotCstMover.cc	pack / task / TaskFactory.hh
movers / BestHotspotCstMover.hh	pose / Pose.fwd.hh
movers / BestHotspotCstMover.hh	types.hh
filters / BindingStrainFilter.cc	conformation / Conformation.hh
filters / BindingStrainFilter.cc	pack / pack_rotamers.hh
filters / BindingStrainFilter.cc	pack / task / PackerTask.hh
filters / BindingStrainFilter.cc	pose / Pose.hh
filters / BindingStrainFilter.cc	scoring / ScoreFunction.hh
filters / BindingStrainFilter.cc	scoring / ScoreType.hh
filters / BindingStrainFilter.cc	pack / task / TaskFactory.hh
filters / BindingStrainFilter.cc	pose / symmetry / util.hh
filters / BindingStrainFilter.hh	pose / Pose.fwd.hh
filters / BindingStrainFilter.hh	scoring / ScoreFunction.fwd.hh
filters / BindingStrainFilter.hh	pack / task / TaskFactory.fwd.hh
filters / BoltzmannFilter.hh	pose / Pose.fwd.hh
movers / BuildAlaPose.cc	kinematics / Jump.hh
movers / BuildAlaPose.cc	pack / pack_rotamers.hh
movers / BuildAlaPose.cc	pack / task / PackerTask.hh
movers / BuildAlaPose.cc	conformation / Residue.hh
movers / BuildAlaPose.cc	scoring / ScoreFunction.hh
movers / BuildAlaPose.cc	scoring / ScoreFunctionFactory.hh
movers / BuildAlaPose.cc	pack / task / TaskFactory.hh
movers / BuildAlaPose.cc	id / types.hh
movers / BuildAlaPose.hh	pose / Pose.fwd.hh
movers / BuildAlaPose.hh	types.hh
filters / ClashWithTargetFilter.cc	id / AtomID.hh
filters / ClashWithTargetFilter.cc	id / AtomID_Map.hh
filters / ClashWithTargetFilter.cc	pose / datacache / cacheable_observers.hh
filters / ClashWithTargetFilter.cc	conformation / Conformation.hh
filters / ClashWithTargetFilter.cc	import_pose / import_pose.hh
filters / ClashWithTargetFilter.cc	id / NamedAtomID.hh
filters / ClashWithTargetFilter.cc	pose / PDBInfo.hh
filters / ClashWithTargetFilter.cc	pose / Pose.hh
filters / ClashWithTargetFilter.cc	scoring / ScoreFunction.hh
filters / ClashWithTargetFilter.cc	scoring / ScoreFunctionFactory.hh
filters / ClashWithTargetFilter.cc	pose / selection.hh
filters / ClashWithTargetFilter.cc	types.hh
filters / ClashWithTargetFilter.cc	pose / util.hh
filters / ClashWithTargetFilter.hh	pose / Pose.hh
filters / ClashWithTargetFilter.hh	types.hh
design_utils.cc	chemical / AA.hh
design_utils.cc	optimization / AtomTreeMinimizer.hh
design_utils.cc	conformation / Conformation.hh
design_utils.cc	scoring / Energies.hh
design_utils.cc	scoring / methods / EnergyMethodOptions.hh
design_utils.cc	kinematics / FoldTree.hh
design_utils.cc	scoring / hbonds / HBondDatabase.hh
design_utils.cc	scoring / hbonds / HBondOptions.hh
design_utils.cc	scoring / hbonds / hbonds.hh
design_utils.cc	scoring / hbonds / HBondSet.hh
design_utils.cc	optimization / MinimizerOptions.hh
design_utils.cc	kinematics / MoveMap.hh
design_utils.cc	scoring / constraints / NonResidueTypeConstraint.hh
design_utils.cc	pack / pack_rotamers.hh
design_utils.cc	pack / task / PackerTask.hh
design_utils.cc	pose / Pose.hh
design_utils.cc	scoring / constraints / ResidueTypeConstraint.hh
design_utils.cc	scoring / ScoreFunction.hh
design_utils.cc	scoring / ScoreFunctionFactory.hh
design_utils.cc	optimization / symmetry / SymAtomTreeMinimizer.hh
design_utils.cc	pack / task / TaskFactory.hh
design_utils.cc	types.hh
design_utils.cc	pose / symmetry / util.hh
design_utils.hh	pose / Pose.fwd.hh
design_utils.hh	scoring / ScoreFunction.hh
design_utils.hh	types.hh
filters / DesignableResiduesFilter.cc	pack / task / PackerTask.hh
filters / DesignableResiduesFilter.cc	pose / PDBInfo.hh
filters / DesignableResiduesFilter.cc	pose / Pose.hh
filters / DesignableResiduesFilter.cc	conformation / Residue.hh
filters / DesignableResiduesFilter.cc	conformation / symmetry / SymmetryInfo.hh
filters / DesignableResiduesFilter.cc	pack / task / TaskFactory.hh
filters / DesignableResiduesFilter.cc	pose / symmetry / util.hh
filters / DesignableResiduesFilter.cc	conformation / symmetry / util.hh
filters / DesignableResiduesFilter.hh	pose / Pose.fwd.hh
filters / DesignableResiduesFilter.hh	pack / task / TaskFactory.fwd.hh
movers / DesignMinimizeHbonds.cc	kinematics / FoldTree.hh
movers / DesignMinimizeHbonds.cc	pack / pack_rotamers.hh
movers / DesignMinimizeHbonds.cc	pack / task / PackerTask.hh
movers / DesignMinimizeHbonds.cc	pose / Pose.hh
movers / DesignMinimizeHbonds.cc	conformation / Residue.hh
movers / DesignMinimizeHbonds.cc	select / residue_selector / ResidueIndexSelector.hh
movers / DesignMinimizeHbonds.cc	pack / task / TaskFactory.hh
movers / DesignMinimizeHbonds.hh	pose / Pose.fwd.hh
movers / DesignMinimizeHbonds.hh	types.hh
filters / DisulfideFilter.cc	scoring / disulfides / CentroidDisulfidePotential.hh
filters / DisulfideFilter.cc	select / residue_selector / ResidueIndexSelector.hh
filters / DisulfideFilter.cc	select / residue_selector / ResidueSelector.hh
filters / DisulfideFilter.cc	pose / selection.hh
filters / DisulfideFilter.cc	types.hh
filters / DisulfideFilter.cc	select / util.hh
filters / DisulfideFilter.hh	scoring / disulfides / CentroidDisulfidePotential.fwd.hh
filters / DisulfideFilter.hh	pose / Pose.fwd.hh
filters / DisulfideFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
filters / DisulfideFilter.hh	types.hh
movers / DisulfideMover.cc	scoring / disulfides / CentroidDisulfidePotential.hh
movers / DisulfideMover.cc	chemical / ChemicalManager.hh
movers / DisulfideMover.cc	conformation / Conformation.hh
movers / DisulfideMover.cc	util / disulfide_util.hh
movers / DisulfideMover.cc	scoring / Energies.hh
movers / DisulfideMover.cc	kinematics / MoveMap.hh
movers / DisulfideMover.cc	pack / task / PackerTask.hh
movers / DisulfideMover.cc	pose / Pose.hh
movers / DisulfideMover.cc	conformation / Residue.hh
movers / DisulfideMover.cc	select / residue_selector / ResidueIndexSelector.hh
movers / DisulfideMover.cc	select / residue_selector / ResidueSelector.hh
movers / DisulfideMover.cc	chemical / ResidueTypeSet.hh
movers / DisulfideMover.cc	scoring / ScoreFunction.hh
movers / DisulfideMover.cc	pose / selection.hh
movers / DisulfideMover.cc	pack / task / TaskFactory.hh
movers / DisulfideMover.cc	types.hh
movers / DisulfideMover.cc	select / util.hh
movers / DisulfideMover.hh	scoring / disulfides / CentroidDisulfidePotential.fwd.hh
movers / DisulfideMover.hh	pose / Pose.fwd.hh
movers / DisulfideMover.hh	types.hh
movers / DockAndRetrieveSidechains.cc	chemical / ChemicalManager.fwd.hh
movers / DockAndRetrieveSidechains.cc	kinematics / FoldTree.hh
movers / DockAndRetrieveSidechains.cc	scoring / ScoreFunction.hh
movers / DockAndRetrieveSidechains.cc	pack / task / TaskFactory.hh
movers / DockAndRetrieveSidechains.hh	pose / Pose.fwd.hh
movers / DockAndRetrieveSidechains.hh	types.hh
movers / DockWithHotspotMover.cc	id / AtomID.hh
movers / DockWithHotspotMover.cc	scoring / constraints / ConstraintSet.hh
movers / DockWithHotspotMover.cc	scoring / Energies.hh
movers / DockWithHotspotMover.cc	kinematics / MoveMap.hh
movers / DockWithHotspotMover.cc	pose / Pose.hh
movers / DockWithHotspotMover.cc	conformation / Residue.hh
movers / DockWithHotspotMover.cc	scoring / ScoreFunction.hh
movers / DockWithHotspotMover.cc	scoring / ScoreFunctionFactory.hh
movers / DockWithHotspotMover.cc	pose / selection.hh
movers / DockWithHotspotMover.cc	util / SwitchResidueTypeSet.hh
movers / DockWithHotspotMover.cc	types.hh
movers / DockWithHotspotMover.hh	pose / Pose.fwd.hh
movers / DockWithHotspotMover.hh	types.hh
movers / FavorNativeResiduePreCycle.hh	pose / Pose.fwd.hh
movers / FavorNativeResiduePreCycle.hh	types.hh
movers / FavorNonNativeResiduePreCycle.hh	pose / Pose.fwd.hh
movers / FavorNonNativeResiduePreCycle.hh	types.hh
filters / FilterScan.cc	chemical / AA.hh
filters / FilterScan.cc	conformation / Conformation.hh
filters / FilterScan.cc	pack / pack_rotamers.hh
filters / FilterScan.cc	pack / task / PackerTask.hh
filters / FilterScan.cc	pose / PDBInfo.hh
filters / FilterScan.cc	pose / Pose.hh
filters / FilterScan.cc	conformation / Residue.hh
filters / FilterScan.cc	chemical / ResidueType.fwd.hh
filters / FilterScan.cc	chemical / ResidueType.hh
filters / FilterScan.cc	scoring / ScoreFunction.hh
filters / FilterScan.cc	conformation / symmetry / SymmetricConformation.hh
filters / FilterScan.cc	conformation / symmetry / SymmetryInfo.hh
filters / FilterScan.cc	pack / task / TaskFactory.hh
filters / FilterScan.cc	pose / symmetry / util.hh
filters / FilterScan.hh	chemical / AA.hh
filters / FilterScan.hh	pose / Pose.fwd.hh
filters / FilterScan.hh	scoring / ScoreFunction.fwd.hh
filters / FilterScan.hh	pack / task / TaskFactory.fwd.hh
filters / FNatFilter.cc	conformation / Conformation.hh
filters / FNatFilter.cc	import_pose / import_pose.hh
filters / FNatFilter.cc	pose / PDBInfo.hh
filters / FNatFilter.cc	pose / Pose.hh
filters / FNatFilter.cc	pose / ref_pose.hh
filters / FNatFilter.cc	scoring / ScoreFunction.hh
filters / FNatFilter.cc	scoring / ScoreFunctionFactory.hh
filters / FNatFilter.cc	types.hh
filters / FNatFilter.hh	pose / Pose.fwd.hh
filters / FNatFilter.hh	scoring / ScoreFunction.hh
filters / FNatFilter.hh	types.hh
filters / HbondsToAtomFilter.cc	chemical / AtomType.hh
filters / HbondsToAtomFilter.cc	chemical / ChemicalManager.fwd.hh
filters / HbondsToAtomFilter.cc	conformation / Conformation.hh
filters / HbondsToAtomFilter.cc	scoring / Energies.hh
filters / HbondsToAtomFilter.cc	kinematics / FoldTree.hh
filters / HbondsToAtomFilter.cc	pack / pack_rotamers.hh
filters / HbondsToAtomFilter.cc	pack / task / PackerTask.hh
filters / HbondsToAtomFilter.cc	pose / PDBInfo.hh
filters / HbondsToAtomFilter.cc	pose / Pose.hh
filters / HbondsToAtomFilter.cc	scoring / ScoreFunction.hh
filters / HbondsToAtomFilter.cc	scoring / ScoreFunctionFactory.hh
filters / HbondsToAtomFilter.cc	scoring / ScoreType.hh
filters / HbondsToAtomFilter.cc	scoring / ScoreTypeManager.hh
filters / HbondsToAtomFilter.cc	pose / selection.hh
filters / HbondsToAtomFilter.cc	util / SwitchResidueTypeSet.hh
filters / HbondsToAtomFilter.cc	conformation / symmetry / SymmetricConformation.hh
filters / HbondsToAtomFilter.cc	conformation / symmetry / SymmetryInfo.hh
filters / HbondsToAtomFilter.cc	pack / task / TaskFactory.hh
filters / HbondsToAtomFilter.cc	types.hh
filters / HbondsToAtomFilter.cc	pose / symmetry / util.hh
filters / HbondsToAtomFilter.hh	pose / Pose.fwd.hh
filters / HbondsToAtomFilter.hh	scoring / ScoreFunction.hh
filters / HbondsToAtomFilter.hh	scoring / ScoreType.hh
filters / HbondsToAtomFilter.hh	types.hh
filters / HbondsToResidueFilter.cc	chemical / AtomType.hh
filters / HbondsToResidueFilter.cc	chemical / ChemicalManager.fwd.hh
filters / HbondsToResidueFilter.cc	conformation / Conformation.hh
filters / HbondsToResidueFilter.cc	scoring / Energies.hh
filters / HbondsToResidueFilter.cc	kinematics / FoldTree.hh
filters / HbondsToResidueFilter.cc	pack / pack_rotamers.hh
filters / HbondsToResidueFilter.cc	pack / task / PackerTask.hh
filters / HbondsToResidueFilter.cc	pose / PDBInfo.hh
filters / HbondsToResidueFilter.cc	pose / Pose.hh
filters / HbondsToResidueFilter.cc	select / residue_selector / ResidueSelector.hh
filters / HbondsToResidueFilter.cc	scoring / ScoreFunction.hh
filters / HbondsToResidueFilter.cc	scoring / ScoreFunctionFactory.hh
filters / HbondsToResidueFilter.cc	scoring / ScoreType.hh
filters / HbondsToResidueFilter.cc	scoring / ScoreTypeManager.hh
filters / HbondsToResidueFilter.cc	pose / selection.hh
filters / HbondsToResidueFilter.cc	util / SwitchResidueTypeSet.hh
filters / HbondsToResidueFilter.cc	conformation / symmetry / SymmetricConformation.hh
filters / HbondsToResidueFilter.cc	conformation / symmetry / SymmetryInfo.hh
filters / HbondsToResidueFilter.cc	pack / task / TaskFactory.hh
filters / HbondsToResidueFilter.cc	types.hh
filters / HbondsToResidueFilter.cc	select / residue_selector / util.hh
filters / HbondsToResidueFilter.cc	pose / symmetry / util.hh
filters / HbondsToResidueFilter.hh	pose / Pose.fwd.hh
filters / HbondsToResidueFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
filters / HbondsToResidueFilter.hh	scoring / ScoreFunction.hh
filters / HbondsToResidueFilter.hh	scoring / ScoreType.hh
filters / HbondsToResidueFilter.hh	types.hh
movers / HotspotDisjointedFoldTreeMover.cc	conformation / Conformation.fwd.hh
movers / HotspotDisjointedFoldTreeMover.cc	conformation / Conformation.hh
movers / HotspotDisjointedFoldTreeMover.cc	kinematics / FoldTree.hh
movers / HotspotDisjointedFoldTreeMover.cc	kinematics / Jump.hh
movers / HotspotDisjointedFoldTreeMover.cc	pose / Pose.hh
movers / HotspotDisjointedFoldTreeMover.cc	conformation / Residue.hh
movers / HotspotDisjointedFoldTreeMover.cc	select / residue_selector / ResidueSelector.hh
movers / HotspotDisjointedFoldTreeMover.cc	scoring / ScoreFunction.hh
movers / HotspotDisjointedFoldTreeMover.cc	pose / selection.hh
movers / HotspotDisjointedFoldTreeMover.cc	kinematics / Stub.hh
movers / HotspotDisjointedFoldTreeMover.cc	pack / task / TaskFactory.hh
movers / HotspotDisjointedFoldTreeMover.cc	select / util.hh
movers / HotspotDisjointedFoldTreeMover.hh	kinematics / FoldTree.fwd.hh
movers / HotspotDisjointedFoldTreeMover.hh	pose / Pose.fwd.hh
movers / HotspotDisjointedFoldTreeMover.hh	select / residue_selector / ResidueSelector.fwd.hh
movers / HotspotDisjointedFoldTreeMover.hh	scoring / ScoreFunction.fwd.hh
movers / HotspotDisjointedFoldTreeMover.hh	types.hh
movers / HotspotHasherMover.cc	scoring / ScoreFunction.hh
movers / HotspotHasherMover.cc	pose / selection.hh
movers / HotspotHasherMover.hh	pose / Pose.fwd.hh
movers / HotspotHasherMover.hh	scoring / ScoreFunction.fwd.hh
movers / HotspotHasherMover.hh	types.hh
filters / InterfaceHolesFilter.cc	scoring / Energies.hh
filters / InterfaceHolesFilter.cc	pose / Pose.hh
filters / InterfaceHolesFilter.cc	scoring / ScoreFunction.hh
filters / InterfaceHolesFilter.cc	types.hh
filters / InterfaceHolesFilter.hh	pose / Pose.fwd.hh
filters / InterfaceHolesFilter.hh	types.hh
movers / InterfaceRecapitulationMover.cc	pack / task / PackerTask.hh
movers / InterfaceRecapitulationMover.cc	pose / Pose.hh
movers / InterfaceRecapitulationMover.cc	pose / ref_pose.hh
movers / InterfaceRecapitulationMover.cc	scoring / ScoreFunction.hh
movers / InterfaceRecapitulationMover.cc	scoring / ScoreFunctionFactory.hh
movers / InterfaceRecapitulationMover.cc	scoring / ScoreType.hh
movers / InterfaceRecapitulationMover.cc	types.hh
movers / InterfaceRecapitulationMover.hh	pose / Pose.fwd.hh
filters / IRmsdFilter.cc	conformation / Conformation.hh
filters / IRmsdFilter.cc	import_pose / import_pose.hh
filters / IRmsdFilter.cc	pose / PDBInfo.hh
filters / IRmsdFilter.cc	pose / Pose.hh
filters / IRmsdFilter.cc	pose / ref_pose.hh
filters / IRmsdFilter.cc	scoring / ScoreFunction.hh
filters / IRmsdFilter.cc	scoring / ScoreFunctionFactory.hh
filters / IRmsdFilter.cc	types.hh
filters / IRmsdFilter.hh	pose / Pose.fwd.hh
filters / IRmsdFilter.hh	scoring / ScoreFunction.hh
filters / IRmsdFilter.hh	types.hh
movers / LoopFinder.cc	conformation / Conformation.fwd.hh
movers / LoopFinder.cc	pack / task / PackerTask.hh
movers / LoopFinder.cc	pose / Pose.hh
movers / LoopFinder.cc	conformation / Residue.hh
movers / LoopFinder.cc	scoring / ScoreFunction.hh
movers / LoopFinder.cc	pose / selection.hh
movers / LoopFinder.cc	pack / task / TaskFactory.hh
movers / LoopFinder.hh	pose / Pose.fwd.hh
movers / LoopFinder.hh	types.hh
movers / LoopLengthChange.cc	conformation / Conformation.hh
movers / LoopLengthChange.cc	kinematics / FoldTree.hh
movers / LoopLengthChange.cc	pose / PDBInfo.hh
movers / LoopLengthChange.cc	pose / Pose.hh
movers / LoopLengthChange.cc	conformation / Residue.hh
movers / LoopLengthChange.cc	conformation / ResidueFactory.hh
movers / LoopLengthChange.cc	pose / ResidueIndexDescription.hh
movers / LoopLengthChange.cc	chemical / ResidueType.hh
movers / LoopLengthChange.cc	chemical / ResidueTypeSet.hh
movers / LoopLengthChange.cc	pose / selection.hh
movers / LoopLengthChange.cc	pose / util.hh
movers / LoopLengthChange.hh	pose / Pose.fwd.hh
movers / LoopLengthChange.hh	pose / ResidueIndexDescription.fwd.hh
movers / LoopLengthChange.hh	types.hh
movers / LoopMoverFromCommandLine.cc	chemical / ChemicalManager.fwd.hh
movers / LoopMoverFromCommandLine.cc	conformation / Conformation.hh
movers / LoopMoverFromCommandLine.cc	scoring / dssp / Dssp.hh
movers / LoopMoverFromCommandLine.cc	kinematics / FoldTree.hh
movers / LoopMoverFromCommandLine.cc	fragment / FragSet.hh
movers / LoopMoverFromCommandLine.cc	kinematics / MoveMap.hh
movers / LoopMoverFromCommandLine.cc	pack / task / operation / NoRepackDisulfides.hh
movers / LoopMoverFromCommandLine.cc	pack / task / PackerTask.hh
movers / LoopMoverFromCommandLine.cc	pose / Pose.hh
movers / LoopMoverFromCommandLine.cc	scoring / ScoreFunction.hh
movers / LoopMoverFromCommandLine.cc	util / SwitchResidueTypeSet.hh
movers / LoopMoverFromCommandLine.cc	pack / task / TaskFactory.hh
movers / LoopMoverFromCommandLine.cc	pack / task / operation / TaskOperations.hh
movers / LoopMoverFromCommandLine.hh	pose / Pose.fwd.hh
movers / LoopMoverFromCommandLine.hh	types.hh
movers / LoopOver.cc	pose / Pose.hh
movers / LoopOver.hh	pose / Pose.fwd.hh
movers / LoopOver.hh	types.hh
movers / LoopRemodel.cc	chemical / ChemicalManager.fwd.hh
movers / LoopRemodel.cc	fragment / ConstantLengthFragSet.hh
movers / LoopRemodel.cc	scoring / dssp / Dssp.hh
movers / LoopRemodel.cc	kinematics / FoldTree.hh
movers / LoopRemodel.cc	fragment / picking_old / FragmentLibraryManager.hh
movers / LoopRemodel.cc	fragment / FragSet.hh
movers / LoopRemodel.cc	fragment / Frame.hh
movers / LoopRemodel.cc	fragment / FrameIterator.hh
movers / LoopRemodel.cc	fragment / FrameIteratorWorker_.hh
movers / LoopRemodel.cc	kinematics / Jump.hh
movers / LoopRemodel.cc	kinematics / MoveMap.hh
movers / LoopRemodel.cc	pack / task / operation / NoRepackDisulfides.hh
movers / LoopRemodel.cc	pack / task / operation / OperateOnCertainResidues.hh
movers / LoopRemodel.cc	pack / task / PackerTask.hh
movers / LoopRemodel.cc	pose / Pose.hh
movers / LoopRemodel.cc	chemical / ResidueType.hh
movers / LoopRemodel.cc	pack / task / operation / ResLvlTaskOperations.hh
movers / LoopRemodel.cc	scoring / ScoreFunction.hh
movers / LoopRemodel.cc	pose / selection.hh
movers / LoopRemodel.cc	util / SwitchResidueTypeSet.hh
movers / LoopRemodel.cc	pack / task / TaskFactory.hh
movers / LoopRemodel.cc	pack / task / operation / TaskOperations.hh
movers / LoopRemodel.cc	fragment / picking_old / vall / util.hh
movers / LoopRemodel.hh	fragment / FragSet.fwd.hh
movers / LoopRemodel.hh	pose / Pose.fwd.hh
movers / LoopRemodel.hh	types.hh
filters / LRmsdFilter.cc	conformation / Conformation.hh
filters / LRmsdFilter.cc	import_pose / import_pose.hh
filters / LRmsdFilter.cc	pose / PDBInfo.hh
filters / LRmsdFilter.cc	pose / Pose.hh
filters / LRmsdFilter.cc	pose / ref_pose.hh
filters / LRmsdFilter.cc	types.hh
filters / LRmsdFilter.hh	pose / Pose.fwd.hh
filters / LRmsdFilter.hh	types.hh
movers / MapHotspot.cc	chemical / AA.hh
movers / MapHotspot.cc	conformation / Conformation.hh
movers / MapHotspot.cc	kinematics / Edge.hh
movers / MapHotspot.cc	kinematics / FoldTree.hh
movers / MapHotspot.cc	pack / task / PackerTask.hh
movers / MapHotspot.cc	pose / Pose.hh
movers / MapHotspot.cc	conformation / ResidueFactory.hh
movers / MapHotspot.cc	chemical / ResidueType.hh
movers / MapHotspot.cc	chemical / ResidueTypeSet.hh
movers / MapHotspot.cc	pack / rotamer_set / RotamerSet.hh
movers / MapHotspot.cc	pack / rotamer_set / RotamerSetFactory.hh
movers / MapHotspot.cc	scoring / ScoreFunction.fwd.hh
movers / MapHotspot.cc	scoring / ScoreFunctionFactory.hh
movers / MapHotspot.cc	pack / task / TaskFactory.hh
movers / MapHotspot.cc	pack / task / operation / TaskOperations.hh
movers / MapHotspot.cc	pose / variant_util.hh
movers / MapHotspot.cc	chemical / VariantType.hh
movers / MapHotspot.hh	pose / Pose.fwd.hh
movers / MapHotspot.hh	pack / rotamer_set / RotamerSet.fwd.hh
movers / MapHotspot.hh	scoring / ScoreFunction.hh
movers / MapHotspot.hh	types.hh
ParserJobInputter.hh	pose / Pose.fwd.hh
movers / PatchdockTransform.cc	pose / Pose.hh
movers / PatchdockTransform.hh	pose / Pose.fwd.hh
movers / PeptideStapleDesignMover.cc	pose / selection.hh
movers / PeptideStapleDesignMover.hh	pose / Pose.fwd.hh
movers / PeptideStapleDesignMover.hh	types.hh
movers / PlacementAuctionMover.cc	chemical / AA.hh
movers / PlacementAuctionMover.cc	id / AtomID.hh
movers / PlacementAuctionMover.cc	scoring / constraints / BackboneStubConstraint.hh
movers / PlacementAuctionMover.cc	scoring / constraints / BackboneStubLinearConstraint.hh
movers / PlacementAuctionMover.cc	conformation / Conformation.hh
movers / PlacementAuctionMover.cc	pack / task / PackerTask.hh
movers / PlacementAuctionMover.cc	pose / Pose.hh
movers / PlacementAuctionMover.cc	pose / ref_pose.hh
movers / PlacementAuctionMover.cc	scoring / ScoreFunction.hh
movers / PlacementAuctionMover.cc	scoring / ScoreFunctionFactory.hh
movers / PlacementAuctionMover.cc	scoring / ScoreType.hh
movers / PlacementAuctionMover.cc	pack / task / TaskFactory.hh
movers / PlacementAuctionMover.cc	types.hh
movers / PlacementAuctionMover.hh	types.hh
movers / PlacementMinimizationMover.cc	chemical / AA.hh
movers / PlacementMinimizationMover.cc	id / AtomID.hh
movers / PlacementMinimizationMover.cc	conformation / Conformation.hh
movers / PlacementMinimizationMover.cc	scoring / constraints / Constraint.hh
movers / PlacementMinimizationMover.cc	kinematics / FoldTree.hh
movers / PlacementMinimizationMover.cc	pack / task / PackerTask.hh
movers / PlacementMinimizationMover.cc	pose / Pose.hh
movers / PlacementMinimizationMover.cc	pose / ref_pose.hh
movers / PlacementMinimizationMover.cc	scoring / ScoreFunction.hh
movers / PlacementMinimizationMover.cc	scoring / ScoreType.hh
movers / PlacementMinimizationMover.cc	pack / task / TaskFactory.hh
movers / PlacementMinimizationMover.cc	types.hh
movers / PlacementMinimizationMover.hh	pose / Pose.fwd.hh
movers / PlacementMinimizationMover.hh	types.hh
movers / PlaceOnLoop.cc	chemical / AA.hh
movers / PlaceOnLoop.cc	id / AtomID.hh
movers / PlaceOnLoop.cc	conformation / Conformation.hh
movers / PlaceOnLoop.cc	scoring / constraints / Constraint.hh
movers / PlaceOnLoop.cc	kinematics / FoldTree.hh
movers / PlaceOnLoop.cc	kinematics / Jump.hh
movers / PlaceOnLoop.cc	pack / pack_rotamers.hh
movers / PlaceOnLoop.cc	pack / task / PackerTask.hh
movers / PlaceOnLoop.cc	pose / Pose.hh
movers / PlaceOnLoop.cc	conformation / Residue.hh
movers / PlaceOnLoop.cc	conformation / ResidueFactory.hh
movers / PlaceOnLoop.cc	chemical / ResidueTypeSet.hh
movers / PlaceOnLoop.cc	scoring / ScoreFunction.hh
movers / PlaceOnLoop.cc	pack / task / TaskFactory.hh
movers / PlaceOnLoop.cc	pose / util.hh
movers / PlaceOnLoop.hh	pose / Pose.fwd.hh
movers / PlaceOnLoop.hh	scoring / ScoreFunction.fwd.hh
movers / PlaceOnLoop.hh	types.hh
movers / PlaceSimultaneouslyMover.cc	chemical / AA.hh
movers / PlaceSimultaneouslyMover.cc	id / AtomID.hh
movers / PlaceSimultaneouslyMover.cc	conformation / Conformation.hh
movers / PlaceSimultaneouslyMover.cc	scoring / constraints / ConstraintSet.hh
movers / PlaceSimultaneouslyMover.cc	scoring / Energies.hh
movers / PlaceSimultaneouslyMover.cc	pack / pack_rotamers.hh
movers / PlaceSimultaneouslyMover.cc	pack / task / PackerTask.hh
movers / PlaceSimultaneouslyMover.cc	pose / Pose.hh
movers / PlaceSimultaneouslyMover.cc	pose / ref_pose.hh
movers / PlaceSimultaneouslyMover.cc	pack / task / ResfileReader.hh
movers / PlaceSimultaneouslyMover.cc	chemical / ResidueType.hh
movers / PlaceSimultaneouslyMover.cc	scoring / ScoreFunction.hh
movers / PlaceSimultaneouslyMover.cc	scoring / ScoreFunctionFactory.hh
movers / PlaceSimultaneouslyMover.cc	scoring / ScoreType.hh
movers / PlaceSimultaneouslyMover.cc	pack / task / TaskFactory.hh
movers / PlaceSimultaneouslyMover.cc	pack / task / operation / TaskOperations.hh
movers / PlaceSimultaneouslyMover.cc	types.hh
movers / PlaceSimultaneouslyMover.cc	pose / variant_util.hh
movers / PlaceSimultaneouslyMover.hh	pack / task / PackerTask.fwd.hh
movers / PlaceSimultaneouslyMover.hh	pose / Pose.hh
movers / PlaceSimultaneouslyMover.hh	types.hh
movers / PlaceStubMover.cc	chemical / AA.hh
movers / PlaceStubMover.cc	scoring / constraints / AmbiguousConstraint.hh
movers / PlaceStubMover.cc	id / AtomID.hh
movers / PlaceStubMover.cc	chemical / AtomType.hh
movers / PlaceStubMover.cc	scoring / constraints / BackboneStubConstraint.hh
movers / PlaceStubMover.cc	conformation / Conformation.hh
movers / PlaceStubMover.cc	scoring / constraints / ConstraintSet.hh
movers / PlaceStubMover.cc	kinematics / FoldTree.hh
movers / PlaceStubMover.cc	scoring / func / HarmonicFunc.hh
movers / PlaceStubMover.cc	pack / pack_rotamers.hh
movers / PlaceStubMover.cc	pack / task / PackerTask.hh
movers / PlaceStubMover.cc	pose / Pose.hh
movers / PlaceStubMover.cc	pose / ref_pose.hh
movers / PlaceStubMover.cc	pack / task / ResfileReader.hh
movers / PlaceStubMover.cc	select / residue_selector / ResidueSelector.hh
movers / PlaceStubMover.cc	chemical / ResidueType.hh
movers / PlaceStubMover.cc	scoring / ScoreFunction.hh
movers / PlaceStubMover.cc	scoring / ScoreFunctionFactory.hh
movers / PlaceStubMover.cc	scoring / ScoreType.hh
movers / PlaceStubMover.cc	pose / selection.hh
movers / PlaceStubMover.cc	pack / task / TaskFactory.hh
movers / PlaceStubMover.cc	pack / task / operation / TaskOperations.hh
movers / PlaceStubMover.cc	types.hh
movers / PlaceStubMover.cc	pose / variant_util.hh
movers / PlaceStubMover.hh	kinematics / FoldTree.fwd.hh
movers / PlaceStubMover.hh	scoring / func / Func.fwd.hh
movers / PlaceStubMover.hh	scoring / func / HarmonicFunc.fwd.hh
movers / PlaceStubMover.hh	pack / task / PackerTask.fwd.hh
movers / PlaceStubMover.hh	pose / Pose.fwd.hh
movers / PlaceStubMover.hh	select / residue_selector / ResidueSelector.fwd.hh
movers / PlaceStubMover.hh	scoring / ScoreFunction.fwd.hh
movers / PlaceStubMover.hh	types.hh
movers / PlaceUtils.cc	chemical / AA.hh
movers / PlaceUtils.cc	id / AtomID.hh
movers / PlaceUtils.cc	conformation / Conformation.hh
movers / PlaceUtils.cc	scoring / constraints / CoordinateConstraint.hh
movers / PlaceUtils.cc	scoring / func / HarmonicFunc.hh
movers / PlaceUtils.cc	pack / pack_rotamers.hh
movers / PlaceUtils.cc	pack / task / PackerTask.hh
movers / PlaceUtils.cc	pose / Pose.hh
movers / PlaceUtils.cc	pack / task / ResfileReader.hh
movers / PlaceUtils.cc	conformation / Residue.hh
movers / PlaceUtils.cc	chemical / ResidueType.hh
movers / PlaceUtils.cc	scoring / ScoreFunction.hh
movers / PlaceUtils.cc	scoring / ScoreFunctionFactory.hh
movers / PlaceUtils.cc	scoring / ScoreType.hh
movers / PlaceUtils.cc	pack / task / TaskFactory.hh
movers / PlaceUtils.cc	types.hh
movers / PlaceUtils.hh	id / AtomID.hh
movers / PlaceUtils.hh	scoring / constraints / Constraint.fwd.hh
movers / PlaceUtils.hh	scoring / func / HarmonicFunc.fwd.hh
movers / PlaceUtils.hh	scoring / func / HarmonicFunc.hh
movers / PlaceUtils.hh	pose / Pose.fwd.hh
movers / PlaceUtils.hh	conformation / Residue.fwd.hh
movers / PlaceUtils.hh	scoring / ScoreFunction.fwd.hh
movers / PlaceUtils.hh	pack / task / TaskFactory.fwd.hh
movers / PlaceUtils.hh	types.hh
movers / PrepackMover.cc	conformation / Conformation.hh
movers / PrepackMover.cc	kinematics / MoveMap.hh
movers / PrepackMover.cc	select / movemap / MoveMapFactory.hh
movers / PrepackMover.cc	pack / task / operation / NoRepackDisulfides.hh
movers / PrepackMover.cc	pack / task / PackerTask.hh
movers / PrepackMover.cc	pose / Pose.hh
movers / PrepackMover.cc	pack / dunbrack / RotamerConstraint.hh
movers / PrepackMover.cc	scoring / ScoreFunction.hh
movers / PrepackMover.cc	pack / task / TaskFactory.hh
movers / PrepackMover.cc	pack / task / operation / TaskOperations.hh
movers / PrepackMover.cc	pack / rotamer_set / UnboundRotamersOperation.hh
movers / PrepackMover.hh	kinematics / MoveMap.fwd.hh
movers / PrepackMover.hh	select / movemap / MoveMapFactory.fwd.hh
movers / PrepackMover.hh	pose / Pose.fwd.hh
movers / PrepackMover.hh	scoring / ScoreFunction.fwd.hh
movers / PrepackMover.hh	types.hh
movers / ProteinInterfaceMultiStateDesignMover.cc	import_pose / import_pose.hh
movers / ProteinInterfaceMultiStateDesignMover.cc	pack / pack_rotamers.hh
movers / ProteinInterfaceMultiStateDesignMover.cc	pack / task / PackerTask.hh
movers / ProteinInterfaceMultiStateDesignMover.cc	pose / PDBInfo.hh
movers / ProteinInterfaceMultiStateDesignMover.cc	pose / Pose.hh
movers / ProteinInterfaceMultiStateDesignMover.cc	conformation / Residue.hh
movers / ProteinInterfaceMultiStateDesignMover.cc	pack / rotamer_trials.hh
movers / ProteinInterfaceMultiStateDesignMover.cc	scoring / ScoreFunction.hh
movers / ProteinInterfaceMultiStateDesignMover.cc	pack / task / TaskFactory.hh
movers / ProteinInterfaceMultiStateDesignMover.cc	pack / task / operation / TaskOperations.hh
movers / ProteinInterfaceMultiStateDesignMover.hh	pack / task / PackerTask.fwd.hh
movers / ProteinInterfaceMultiStateDesignMover.hh	pose / Pose.fwd.hh
movers / ProteinInterfaceMultiStateDesignMover.hh	scoring / ScoreFunction.fwd.hh
movers / ProteinInterfaceMultiStateDesignMover.hh	pack / task / TaskFactory.fwd.hh
movers / RandomMutation.cc	kinematics / Jump.hh
movers / RandomMutation.cc	pack / task / PackerTask.hh
movers / RandomMutation.cc	pose / Pose.hh
movers / RandomMutation.cc	conformation / Residue.hh
movers / RandomMutation.cc	chemical / ResidueType.hh
movers / RandomMutation.cc	scoring / ScoreFunction.hh
movers / RandomMutation.cc	pack / task / TaskFactory.hh
movers / RandomMutation.cc	pose / symmetry / util.hh
movers / RandomMutation.hh	pack / task / PackerTask.fwd.hh
movers / RandomMutation.hh	pose / Pose.fwd.hh
movers / RandomMutation.hh	scoring / ScoreFunction.fwd.hh
movers / RandomMutation.hh	pack / task / TaskFactory.fwd.hh
movers / RandomMutation.hh	types.hh
read_patchdock.cc	chemical / ChemicalManager.hh
read_patchdock.cc	conformation / Conformation.hh
read_patchdock.cc	kinematics / FoldTree.hh
read_patchdock.cc	import_pose / import_pose.hh
read_patchdock.cc	pose / Pose.hh
read_patchdock.hh	pose / Pose.fwd.hh
read_patchdock.hh	types.hh
filters / RelativeSegmentFilter.cc	import_pose / import_pose.hh
filters / RelativeSegmentFilter.cc	pose / Pose.hh
filters / RelativeSegmentFilter.cc	types.hh
filters / RelativeSegmentFilter.hh	pose / Pose.fwd.hh
filters / RelativeSegmentFilter.hh	types.hh
movers / RepackMinimize.cc	pack / pack_rotamers.hh
movers / RepackMinimize.cc	pack / task / PackerTask.hh
movers / RepackMinimize.cc	pose / Pose.hh
movers / RepackMinimize.cc	select / residue_selector / ResidueIndexSelector.hh
movers / RepackMinimize.cc	pack / task / TaskFactory.hh
movers / RepackMinimize.hh	pose / Pose.fwd.hh
movers / RepackMinimize.hh	types.hh
ReportPSSMDifference.cc	chemical / AA.hh
ReportPSSMDifference.cc	pack / task / PackerTask.hh
ReportPSSMDifference.cc	pose / Pose.hh
ReportPSSMDifference.cc	conformation / Residue.hh
ReportPSSMDifference.cc	types.hh
ReportPSSMDifference.hh	chemical / AA.hh
ReportPSSMDifference.hh	pack / task / PackerTask.fwd.hh
ReportPSSMDifference.hh	pose / Pose.fwd.hh
ReportPSSMDifference.hh	types.hh
filters / RmsdFilter.cc	id / AtomID.hh
filters / RmsdFilter.cc	id / AtomID_Map.hh
filters / RmsdFilter.cc	pose / datacache / cacheable_observers.hh
filters / RmsdFilter.cc	select / residue_selector / ChainSelector.hh
filters / RmsdFilter.cc	conformation / Conformation.hh
filters / RmsdFilter.cc	import_pose / import_pose.hh
filters / RmsdFilter.cc	id / NamedAtomID.hh
filters / RmsdFilter.cc	pose / PDBInfo.hh
filters / RmsdFilter.cc	pose / Pose.hh
filters / RmsdFilter.cc	pose / ref_pose.hh
filters / RmsdFilter.cc	conformation / Residue.hh
filters / RmsdFilter.cc	select / residue_selector / ResidueIndexSelector.hh
filters / RmsdFilter.cc	select / residue_selector / ResidueSelector.hh
filters / RmsdFilter.cc	select / residue_selector / ResidueSpanSelector.hh
filters / RmsdFilter.cc	scoring / rms_util.hh
filters / RmsdFilter.cc	scoring / rms_util.tmpl.hh
filters / RmsdFilter.cc	pose / selection.hh
filters / RmsdFilter.cc	select / residue_selector / TrueResidueSelector.hh
filters / RmsdFilter.cc	types.hh
filters / RmsdFilter.cc	select / residue_selector / util.hh
filters / RmsdFilter.hh	pose / Pose.hh
filters / RmsdFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
filters / RmsdFilter.hh	types.hh
filters / RmsdSimpleFilter.cc	id / AtomID.hh
filters / RmsdSimpleFilter.cc	id / AtomID_Map.hh
filters / RmsdSimpleFilter.cc	pose / datacache / cacheable_observers.hh
filters / RmsdSimpleFilter.cc	conformation / Conformation.hh
filters / RmsdSimpleFilter.cc	import_pose / import_pose.hh
filters / RmsdSimpleFilter.cc	id / NamedAtomID.hh
filters / RmsdSimpleFilter.cc	pose / PDBInfo.hh
filters / RmsdSimpleFilter.cc	pose / Pose.hh
filters / RmsdSimpleFilter.cc	pose / ref_pose.hh
filters / RmsdSimpleFilter.cc	scoring / rms_util.hh
filters / RmsdSimpleFilter.cc	scoring / rms_util.tmpl.hh
filters / RmsdSimpleFilter.cc	pose / selection.hh
filters / RmsdSimpleFilter.cc	types.hh
filters / RmsdSimpleFilter.hh	pose / Pose.hh
filters / RmsdSimpleFilter.hh	types.hh
movers / SaveAndRetrieveSidechains.cc	kinematics / Jump.hh
movers / SaveAndRetrieveSidechains.cc	pack / task / PackerTask.hh
movers / SaveAndRetrieveSidechains.cc	pose / Pose.hh
movers / SaveAndRetrieveSidechains.cc	pose / ref_pose.hh
movers / SaveAndRetrieveSidechains.cc	conformation / Residue.hh
movers / SaveAndRetrieveSidechains.cc	chemical / ResidueProperties.hh
movers / SaveAndRetrieveSidechains.cc	scoring / ScoreFunction.hh
movers / SaveAndRetrieveSidechains.cc	conformation / symmetry / SymmetricConformation.hh
movers / SaveAndRetrieveSidechains.cc	conformation / symmetry / SymmetryInfo.hh
movers / SaveAndRetrieveSidechains.cc	pack / task / TaskFactory.hh
movers / SaveAndRetrieveSidechains.cc	pose / symmetry / util.hh
movers / SaveAndRetrieveSidechains.cc	conformation / symmetry / util.hh
movers / SaveAndRetrieveSidechains.cc	chemical / util.hh
movers / SaveAndRetrieveSidechains.cc	pose / variant_util.hh
movers / SaveAndRetrieveSidechains.hh	pose / Pose.fwd.hh
movers / SaveAndRetrieveSidechains.hh	types.hh
filters / SequenceRecoveryFilter.cc	import_pose / import_pose.hh
filters / SequenceRecoveryFilter.cc	pack / task / PackerTask.hh
filters / SequenceRecoveryFilter.cc	pose / Pose.hh
filters / SequenceRecoveryFilter.cc	pose / ref_pose.hh
filters / SequenceRecoveryFilter.cc	scoring / ScoreFunction.hh
filters / SequenceRecoveryFilter.cc	scoring / ScoreFunctionFactory.hh
filters / SequenceRecoveryFilter.cc	scoring / ScoreType.hh
filters / SequenceRecoveryFilter.cc	pack / task / TaskFactory.hh
filters / SequenceRecoveryFilter.cc	pose / util.hh
filters / SequenceRecoveryFilter.cc	pose / symmetry / util.hh
filters / SequenceRecoveryFilter.hh	pose / Pose.fwd.hh
filters / SequenceRecoveryFilter.hh	scoring / ScoreFunction.fwd.hh
filters / SequenceRecoveryFilter.hh	pack / task / TaskFactory.fwd.hh
movers / SetAtomTree.cc	conformation / Conformation.hh
movers / SetAtomTree.cc	pose / extra_pose_info_util.hh
movers / SetAtomTree.cc	kinematics / FoldTree.hh
movers / SetAtomTree.cc	pose / PDBInfo.hh
movers / SetAtomTree.cc	pose / PDBPoseMap.hh
movers / SetAtomTree.cc	pose / Pose.hh
movers / SetAtomTree.cc	conformation / Residue.hh
movers / SetAtomTree.cc	chemical / ResidueType.hh
movers / SetAtomTree.cc	pose / selection.hh
movers / SetAtomTree.cc	pose / util.hh
movers / SetAtomTree.cc	pose / variant_util.hh
movers / SetAtomTree.cc	chemical / VariantType.hh
movers / SetAtomTree.hh	kinematics / FoldTree.fwd.hh
movers / SetAtomTree.hh	pose / Pose.fwd.hh
movers / SetAtomTree.hh	types.hh
movers / SetTemperatureFactor.cc	kinematics / Jump.hh
movers / SetTemperatureFactor.cc	pose / PDBInfo.hh
movers / SetTemperatureFactor.cc	pose / Pose.hh
movers / SetTemperatureFactor.cc	conformation / Residue.hh
movers / SetTemperatureFactor.hh	pose / Pose.fwd.hh
movers / SetupHotspotConstraintsLoopsMover.cc	chemical / AA.hh
movers / SetupHotspotConstraintsLoopsMover.cc	scoring / constraints / AmbiguousConstraint.hh
movers / SetupHotspotConstraintsLoopsMover.cc	id / AtomID_Map.hh
movers / SetupHotspotConstraintsLoopsMover.cc	scoring / constraints / BackboneStubConstraint.hh
movers / SetupHotspotConstraintsLoopsMover.cc	chemical / ChemicalManager.hh
movers / SetupHotspotConstraintsLoopsMover.cc	conformation / Conformation.hh
movers / SetupHotspotConstraintsLoopsMover.cc	scoring / constraints / Constraint.hh
movers / SetupHotspotConstraintsLoopsMover.cc	scoring / constraints / ConstraintSet.hh
movers / SetupHotspotConstraintsLoopsMover.cc	kinematics / FoldTree.hh
movers / SetupHotspotConstraintsLoopsMover.cc	fragment / FragSet.hh
movers / SetupHotspotConstraintsLoopsMover.cc	scoring / func / HarmonicFunc.hh
movers / SetupHotspotConstraintsLoopsMover.cc	import_pose / import_pose.hh
movers / SetupHotspotConstraintsLoopsMover.cc	kinematics / Jump.hh
movers / SetupHotspotConstraintsLoopsMover.cc	pack / pack_rotamers.hh
movers / SetupHotspotConstraintsLoopsMover.cc	pack / task / PackerTask.fwd.hh
movers / SetupHotspotConstraintsLoopsMover.cc	pack / task / PackerTask.hh
movers / SetupHotspotConstraintsLoopsMover.cc	pose / Pose.hh
movers / SetupHotspotConstraintsLoopsMover.cc	pack / task / ResfileReader.hh
movers / SetupHotspotConstraintsLoopsMover.cc	conformation / Residue.hh
movers / SetupHotspotConstraintsLoopsMover.cc	conformation / ResidueFactory.hh
movers / SetupHotspotConstraintsLoopsMover.cc	chemical / ResidueType.hh
movers / SetupHotspotConstraintsLoopsMover.cc	chemical / ResidueTypeSet.hh
movers / SetupHotspotConstraintsLoopsMover.cc	scoring / ScoreFunction.hh
movers / SetupHotspotConstraintsLoopsMover.cc	scoring / ScoreType.hh
movers / SetupHotspotConstraintsLoopsMover.cc	io / silent / silent.fwd.hh
movers / SetupHotspotConstraintsLoopsMover.cc	io / silent / SilentStructFactory.hh
movers / SetupHotspotConstraintsLoopsMover.cc	pack / task / TaskFactory.hh
movers / SetupHotspotConstraintsLoopsMover.cc	types.hh
movers / SetupHotspotConstraintsLoopsMover.cc	scoring / electron_density / util.hh
movers / SetupHotspotConstraintsLoopsMover.cc	pose / util.hh
movers / SetupHotspotConstraintsLoopsMover.hh	scoring / constraints / Constraint.fwd.hh
movers / SetupHotspotConstraintsLoopsMover.hh	pose / Pose.fwd.hh
movers / SetupHotspotConstraintsLoopsMover.hh	types.hh
movers / SetupHotspotConstraintsMover.cc	scoring / constraints / ConstraintSet.hh
movers / SetupHotspotConstraintsMover.cc	pose / Pose.hh
movers / SetupHotspotConstraintsMover.cc	scoring / ScoreFunction.hh
movers / SetupHotspotConstraintsMover.cc	scoring / ScoreType.hh
movers / SetupHotspotConstraintsMover.cc	types.hh
movers / SetupHotspotConstraintsMover.hh	pose / Pose.fwd.hh
movers / SetupHotspotConstraintsMover.hh	types.hh
movers / ShoveResidueMover.cc	kinematics / FoldTree.hh
movers / ShoveResidueMover.cc	kinematics / Jump.hh
movers / ShoveResidueMover.cc	pack / task / PackerTask.hh
movers / ShoveResidueMover.cc	pose / Pose.hh
movers / ShoveResidueMover.cc	select / residue_selector / ResidueIndexSelector.hh
movers / ShoveResidueMover.cc	select / residue_selector / ResidueSelector.hh
movers / ShoveResidueMover.cc	pack / rotamer_set / RotamerSetFactory.hh
movers / ShoveResidueMover.cc	pose / selection.hh
movers / ShoveResidueMover.cc	pack / task / TaskFactory.hh
movers / ShoveResidueMover.cc	select / util.hh
movers / ShoveResidueMover.cc	pose / variant_util.hh
movers / ShoveResidueMover.hh	pose / Pose.fwd.hh
movers / ShoveResidueMover.hh	select / residue_selector / ResidueSelector.fwd.hh
movers / ShoveResidueMover.hh	types.hh
filters / SpecificResiduesNearInterfaceFilter.cc	conformation / Conformation.hh
filters / SpecificResiduesNearInterfaceFilter.cc	pack / task / PackerTask.hh
filters / SpecificResiduesNearInterfaceFilter.cc	pose / Pose.hh
filters / SpecificResiduesNearInterfaceFilter.cc	pack / task / TaskFactory.hh
filters / SpecificResiduesNearInterfaceFilter.hh	pose / Pose.fwd.hh
filters / SpecificResiduesNearInterfaceFilter.hh	pack / task / TaskFactory.fwd.hh
movers / SpinMover.cc	conformation / Conformation.fwd.hh
movers / SpinMover.cc	conformation / Conformation.hh
movers / SpinMover.cc	kinematics / FoldTree.hh
movers / SpinMover.cc	kinematics / Jump.hh
movers / SpinMover.cc	pose / Pose.hh
movers / SpinMover.cc	conformation / Residue.hh
movers / SpinMover.cc	kinematics / Stub.hh
movers / SpinMover.hh	pose / Pose.fwd.hh
movers / SpinMover.hh	types.hh
filters / SSamountFilter.cc	id / AtomID.hh
filters / SSamountFilter.cc	id / AtomID_Map.hh
filters / SSamountFilter.cc	pose / datacache / cacheable_observers.hh
filters / SSamountFilter.cc	conformation / Conformation.hh
filters / SSamountFilter.cc	scoring / dssp / Dssp.hh
filters / SSamountFilter.cc	import_pose / import_pose.hh
filters / SSamountFilter.cc	id / NamedAtomID.hh
filters / SSamountFilter.cc	pose / PDBInfo.hh
filters / SSamountFilter.cc	pose / Pose.hh
filters / SSamountFilter.cc	scoring / rms_util.hh
filters / SSamountFilter.cc	scoring / rms_util.tmpl.hh
filters / SSamountFilter.cc	pose / selection.hh
filters / SSamountFilter.cc	types.hh
filters / SSamountFilter.hh	pose / Pose.hh
filters / SSamountFilter.hh	types.hh
filters / StubScoreFilter.cc	chemical / AA.hh
filters / StubScoreFilter.cc	scoring / constraints / Constraint.hh
filters / StubScoreFilter.cc	kinematics / Jump.hh
filters / StubScoreFilter.cc	pose / Pose.hh
filters / StubScoreFilter.cc	pose / ref_pose.hh
filters / StubScoreFilter.cc	scoring / ScoreFunction.hh
filters / StubScoreFilter.cc	scoring / ScoreType.hh
filters / StubScoreFilter.cc	types.hh
filters / StubScoreFilter.hh	pose / Pose.fwd.hh
filters / StubScoreLoopsFilter.cc	scoring / constraints / Constraint.hh
filters / StubScoreLoopsFilter.cc	kinematics / Jump.hh
filters / StubScoreLoopsFilter.cc	pose / Pose.hh
filters / StubScoreLoopsFilter.cc	types.hh
filters / StubScoreLoopsFilter.hh	pose / Pose.fwd.hh
movers / SubroutineMover.cc	pose / Pose.hh
movers / SubroutineMover.cc	types.hh
movers / SubroutineMover.hh	pose / Pose.fwd.hh
movers / TaskAwareCsts.cc	id / AtomID.hh
movers / TaskAwareCsts.cc	conformation / Conformation.hh
movers / TaskAwareCsts.cc	scoring / constraints / CoordinateConstraint.hh
movers / TaskAwareCsts.cc	scoring / func / HarmonicFunc.hh
movers / TaskAwareCsts.cc	pose / Pose.hh
movers / TaskAwareCsts.cc	conformation / Residue.hh
movers / TaskAwareCsts.cc	pose / selection.hh
movers / TaskAwareCsts.cc	pack / task / TaskFactory.hh
movers / TaskAwareCsts.cc	pack / task / operation / TaskOperations.hh
movers / TaskAwareCsts.cc	conformation / util.hh
movers / TaskAwareCsts.hh	pose / Pose.fwd.hh
movers / TaskAwareCsts.hh	pack / task / TaskFactory.fwd.hh
movers / TopologyBrokerMover.cc	id / AtomID.hh
movers / TopologyBrokerMover.cc	id / AtomID_Map.hh
movers / TopologyBrokerMover.cc	import_pose / import_pose.hh
movers / TopologyBrokerMover.cc	kinematics / Jump.hh
movers / TopologyBrokerMover.cc	pack / pack_rotamers.hh
movers / TopologyBrokerMover.cc	pack / task / PackerTask.hh
movers / TopologyBrokerMover.cc	pose / PDBInfo.hh
movers / TopologyBrokerMover.cc	pose / Pose.hh
movers / TopologyBrokerMover.cc	conformation / Residue.hh
movers / TopologyBrokerMover.cc	scoring / rms_util.hh
movers / TopologyBrokerMover.cc	scoring / ScoreFunction.hh
movers / TopologyBrokerMover.cc	scoring / ScoreFunctionFactory.hh
movers / TopologyBrokerMover.cc	util / SwitchResidueTypeSet.hh
movers / TopologyBrokerMover.cc	pack / task / TaskFactory.hh
movers / TopologyBrokerMover.cc	id / types.hh
movers / TopologyBrokerMover.cc	pose / util.hh
movers / TopologyBrokerMover.hh	pose / Pose.fwd.hh
movers / TopologyBrokerMover.hh	types.hh
filters / TorsionFilter.cc	pose / PDBInfo.hh
filters / TorsionFilter.cc	pose / Pose.hh
filters / TorsionFilter.cc	conformation / Residue.hh
filters / TorsionFilter.cc	pose / ResidueIndexDescription.hh
filters / TorsionFilter.cc	pose / selection.hh
filters / TorsionFilter.cc	pack / task / TaskFactory.hh
filters / TorsionFilter.hh	pose / Pose.fwd.hh
filters / TorsionFilter.hh	pose / ResidueIndexDescription.fwd.hh
filters / TorsionFilter.hh	pack / task / TaskFactory.fwd.hh
movers / TryRotamers.cc	kinematics / FoldTree.hh
movers / TryRotamers.cc	kinematics / Jump.hh
movers / TryRotamers.cc	pack / task / PackerTask.hh
movers / TryRotamers.cc	pose / Pose.hh
movers / TryRotamers.cc	select / residue_selector / ResidueSelector.hh
movers / TryRotamers.cc	pack / rotamer_set / RotamerSetFactory.hh
movers / TryRotamers.cc	scoring / ScoreFunction.hh
movers / TryRotamers.cc	pose / selection.hh
movers / TryRotamers.cc	pack / task / TaskFactory.hh
movers / TryRotamers.cc	select / util.hh
movers / TryRotamers.cc	pose / variant_util.hh
movers / TryRotamers.hh	pose / Pose.fwd.hh
movers / TryRotamers.hh	select / residue_selector / ResidueSelector.fwd.hh
movers / TryRotamers.hh	pack / rotamer_set / RotamerSet.hh
movers / TryRotamers.hh	scoring / ScoreFunction.fwd.hh
movers / TryRotamers.hh	types.hh
util.cc	scoring / constraints / AmbiguousConstraint.hh
util.cc	chemical / AtomType.hh
util.cc	conformation / Conformation.hh
util.cc	scoring / constraints / ConstraintSet.hh
util.cc	scoring / constraints / CoordinateConstraint.hh
util.cc	scoring / dssp / Dssp.hh
util.cc	scoring / Energies.hh
util.cc	kinematics / FoldTree.hh
util.cc	pose / Pose.hh
util.cc	scoring / ScoreFunction.hh
util.cc	scoring / ScoreFunctionFactory.hh
util.cc	scoring / ScoreType.hh
util.cc	types.hh
util.hh	scoring / constraints / Constraint.fwd.hh
util.hh	kinematics / FoldTree.fwd.hh
util.hh	pose / Pose.fwd.hh
util.hh	types.hh
movers / VLB.cc	import_pose / import_pose.hh
movers / VLB.cc	kinematics / MoveMap.hh
movers / VLB.cc	pose / Pose.hh
movers / VLB.cc	pose / ResidueIndexDescription.hh
movers / VLB.cc	scoring / ScoreFunction.hh
movers / VLB.cc	pose / selection.hh
movers / VLB.cc	types.hh
movers / VLB.hh	pose / Pose.fwd.hh
movers / VLB.hh	pose / ResidueIndexDescription.hh
movers / VLB.hh	scoring / ScoreFunction.fwd.hh