rna → core Relation

File in src/protocols/rna	Includes file in src/core
AlignmentEnergy.cc	id / AtomID.hh
AlignmentEnergy.cc	chemical / ChemicalManager.hh
AlignmentEnergy.cc	scoring / constraints / CoordinateConstraint.hh
AlignmentEnergy.cc	scoring / EnergyMap.hh
AlignmentEnergy.cc	scoring / func / FlatHarmonicFunc.hh
AlignmentEnergy.cc	pose / full_model_info / FullModelInfo.hh
AlignmentEnergy.cc	scoring / func / HarmonicFunc.hh
AlignmentEnergy.cc	import_pose / import_pose.hh
AlignmentEnergy.cc	scoring / constraints / MultiConstraint.hh
AlignmentEnergy.cc	pose / Pose.hh
AlignmentEnergy.cc	conformation / Residue.hh
AlignmentEnergy.cc	scoring / rms_util.hh
AlignmentEnergy.cc	scoring / ScoreFunction.hh
AlignmentEnergy.cc	scoring / ScoreType.hh
AlignmentEnergy.cc	types.hh
AlignmentEnergy.cc	pose / full_model_info / util.hh
AlignmentEnergy.cc	scoring / methods / WholeStructureEnergy.hh
AlignmentEnergy.cc	scoring / func / XYZ_Func.hh
AlignmentEnergy.hh	scoring / methods / EnergyMethod.hh
AlignmentEnergy.hh	scoring / methods / EnergyMethodOptions.fwd.hh
AlignmentEnergy.hh	scoring / func / Func.fwd.hh
AlignmentEnergy.hh	pose / Pose.fwd.hh
AlignmentEnergy.hh	scoring / ScoreFunction.fwd.hh
AlignmentEnergy.hh	scoring / ScoreType.hh
AlignmentEnergy.hh	types.hh
AlignmentEnergy.hh	scoring / methods / WholeStructureEnergy.hh
AlignmentEnergyCreator.hh	scoring / methods / EnergyMethod.fwd.hh
AlignmentEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
AlignmentEnergyCreator.hh	scoring / methods / EnergyMethodOptions.fwd.hh
denovo / coarse / CoarseRNA_Fragments.cc	id / AtomID.hh
denovo / coarse / CoarseRNA_Fragments.cc	pose / toolbox / AtomID_Mapper.hh
denovo / coarse / CoarseRNA_Fragments.cc	pose / toolbox / AtomLevelDomainMap.hh
denovo / coarse / CoarseRNA_Fragments.cc	chemical / ChemicalManager.hh
denovo / coarse / CoarseRNA_Fragments.cc	kinematics / FoldTree.hh
denovo / coarse / CoarseRNA_Fragments.cc	import_pose / import_pose.hh
denovo / coarse / CoarseRNA_Fragments.cc	pose / MiniPose.hh
denovo / coarse / CoarseRNA_Fragments.cc	pose / Pose.hh
denovo / coarse / CoarseRNA_Fragments.cc	conformation / Residue.hh
denovo / coarse / CoarseRNA_Fragments.cc	chemical / ResidueTypeSet.hh
denovo / coarse / CoarseRNA_Fragments.cc	fragment / rna / RNA_FragmentHomologyExclusion.hh
denovo / coarse / CoarseRNA_Fragments.cc	pose / rna / secstruct_legacy / RNA_SecStructLegacyInfo.hh
denovo / coarse / CoarseRNA_Fragments.cc	types.hh
denovo / coarse / CoarseRNA_Fragments.cc	pose / copydofs / util.hh
denovo / coarse / CoarseRNA_Fragments.cc	pose / rna / util.hh
denovo / coarse / CoarseRNA_Fragments.cc	pose / util.hh
denovo / coarse / CoarseRNA_Fragments.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
denovo / coarse / CoarseRNA_Fragments.hh	pose / MiniPose.hh
denovo / coarse / CoarseRNA_Fragments.hh	pose / Pose.fwd.hh
denovo / coarse / CoarseRNA_Fragments.hh	fragment / rna / RNA_FragmentHomologyExclusion.fwd.hh
denovo / coarse / CoarseRNA_Fragments.hh	fragment / rna / RNA_Fragments.hh
denovo / coarse / CoarseRNA_Fragments.hh	fragment / rna / TorsionSet.fwd.hh
denovo / coarse / CoarseRNA_Fragments.hh	types.hh
denovo / coarse / CoarseRNA_LoopCloser.cc	kinematics / tree / Atom.hh
denovo / coarse / CoarseRNA_LoopCloser.cc	id / AtomID.hh
denovo / coarse / CoarseRNA_LoopCloser.cc	pose / toolbox / AtomLevelDomainMap.hh
denovo / coarse / CoarseRNA_LoopCloser.cc	kinematics / AtomTree.hh
denovo / coarse / CoarseRNA_LoopCloser.cc	id / DOF_ID.hh
denovo / coarse / CoarseRNA_LoopCloser.cc	kinematics / FoldTree.hh
denovo / coarse / CoarseRNA_LoopCloser.cc	id / NamedAtomID.hh
denovo / coarse / CoarseRNA_LoopCloser.cc	pose / Pose.hh
denovo / coarse / CoarseRNA_LoopCloser.cc	chemical / ResidueType.hh
denovo / coarse / CoarseRNA_LoopCloser.cc	scoring / ScoreFunction.hh
denovo / coarse / CoarseRNA_LoopCloser.cc	id / TorsionID.hh
denovo / coarse / CoarseRNA_LoopCloser.cc	types.hh
denovo / coarse / CoarseRNA_LoopCloser.cc	pose / util.hh
denovo / coarse / CoarseRNA_LoopCloser.cc	chemical / VariantType.hh
denovo / coarse / CoarseRNA_LoopCloser.hh	kinematics / tree / Atom.fwd.hh
denovo / coarse / CoarseRNA_LoopCloser.hh	pose / toolbox / AtomLevelDomainMap.hh
denovo / coarse / CoarseRNA_LoopCloser.hh	id / DOF_ID.hh
denovo / coarse / CoarseRNA_LoopCloser.hh	id / NamedAtomID.hh
denovo / coarse / CoarseRNA_LoopCloser.hh	pose / Pose.fwd.hh
denovo / coarse / CoarseRNA_LoopCloser.hh	scoring / ScoreFunction.hh
denovo / coarse / CoarseRNA_LoopCloser.hh	types.hh
movers / ERRASER2Protocol.cc	chemical / AtomType.hh
movers / ERRASER2Protocol.cc	conformation / Conformation.hh
movers / ERRASER2Protocol.cc	scoring / Energies.hh
movers / ERRASER2Protocol.cc	pose / PDBInfo.hh
movers / ERRASER2Protocol.cc	pose / Pose.hh
movers / ERRASER2Protocol.cc	conformation / Residue.hh
movers / ERRASER2Protocol.cc	select / residue_selector / ResidueSelector.hh
movers / ERRASER2Protocol.cc	chemical / ResidueType.hh
movers / ERRASER2Protocol.cc	pose / rna / RNA_SuiteName.hh
movers / ERRASER2Protocol.cc	scoring / ScoreFunction.hh
movers / ERRASER2Protocol.cc	scoring / ScoreFunctionFactory.hh
movers / ERRASER2Protocol.cc	scoring / ScoreType.hh
movers / ERRASER2Protocol.cc	types.hh
movers / ERRASER2Protocol.cc	select / residue_selector / util.hh
movers / ERRASER2Protocol.hh	pose / Pose.fwd.hh
movers / ERRASER2Protocol.hh	select / residue_selector / ResidueSelector.fwd.hh
movers / ERRASER2Protocol.hh	scoring / ScoreFunction.fwd.hh
movers / ErraserMinimizerMover.cc	chemical / AA.hh
movers / ErraserMinimizerMover.cc	scoring / constraints / AngleConstraint.hh
movers / ErraserMinimizerMover.cc	pose / annotated_sequence.hh
movers / ErraserMinimizerMover.cc	id / AtomID.hh
movers / ErraserMinimizerMover.cc	scoring / constraints / AtomPairConstraint.hh
movers / ErraserMinimizerMover.cc	kinematics / AtomTree.hh
movers / ErraserMinimizerMover.cc	optimization / AtomTreeMinimizer.hh
movers / ErraserMinimizerMover.cc	chemical / AtomType.hh
movers / ErraserMinimizerMover.cc	io / silent / BinarySilentStruct.hh
movers / ErraserMinimizerMover.cc	io / pdb / build_pose_as_is.hh
movers / ErraserMinimizerMover.cc	optimization / CartesianMinimizer.hh
movers / ErraserMinimizerMover.cc	chemical / ChemicalManager.hh
movers / ErraserMinimizerMover.cc	conformation / Conformation.hh
movers / ErraserMinimizerMover.cc	scoring / constraints / Constraint.hh
movers / ErraserMinimizerMover.cc	scoring / constraints / ConstraintIO.hh
movers / ErraserMinimizerMover.cc	scoring / constraints / ConstraintSet.hh
movers / ErraserMinimizerMover.cc	scoring / constraints / CoordinateConstraint.hh
movers / ErraserMinimizerMover.cc	kinematics / FoldTree.hh
movers / ErraserMinimizerMover.cc	pose / full_model_info / FullModelInfo.hh
movers / ErraserMinimizerMover.cc	scoring / func / HarmonicFunc.hh
movers / ErraserMinimizerMover.cc	import_pose / import_pose.hh
movers / ErraserMinimizerMover.cc	kinematics / Jump.hh
movers / ErraserMinimizerMover.cc	optimization / MinimizerOptions.hh
movers / ErraserMinimizerMover.cc	kinematics / MoveMap.hh
movers / ErraserMinimizerMover.cc	id / NamedAtomID.hh
movers / ErraserMinimizerMover.cc	pack / pack_rotamers.hh
movers / ErraserMinimizerMover.cc	pack / task / PackerTask.hh
movers / ErraserMinimizerMover.cc	pose / PDBInfo.hh
movers / ErraserMinimizerMover.cc	pose / Pose.hh
movers / ErraserMinimizerMover.cc	import_pose / pose_stream / PoseInputStream.hh
movers / ErraserMinimizerMover.cc	conformation / Residue.hh
movers / ErraserMinimizerMover.cc	conformation / ResidueFactory.hh
movers / ErraserMinimizerMover.cc	chemical / ResidueTypeFinder.hh
movers / ErraserMinimizerMover.cc	chemical / ResidueTypeSet.hh
movers / ErraserMinimizerMover.cc	scoring / rms_util.tmpl.hh
movers / ErraserMinimizerMover.cc	chemical / rna / RNA_FittedTorsionInfo.hh
movers / ErraserMinimizerMover.cc	pose / rna / RNA_IdealCoord.hh
movers / ErraserMinimizerMover.cc	scoring / rna / RNA_TorsionPotential.hh
movers / ErraserMinimizerMover.cc	pack / rotamer_trials.hh
movers / ErraserMinimizerMover.cc	scoring / ScoreFunction.hh
movers / ErraserMinimizerMover.cc	scoring / ScoreFunctionFactory.hh
movers / ErraserMinimizerMover.cc	scoring / ScoreType.hh
movers / ErraserMinimizerMover.cc	scoring / ScoringManager.hh
movers / ErraserMinimizerMover.cc	sequence / Sequence.hh
movers / ErraserMinimizerMover.cc	io / silent / SilentFileData.hh
movers / ErraserMinimizerMover.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
movers / ErraserMinimizerMover.cc	pack / task / TaskFactory.hh
movers / ErraserMinimizerMover.cc	types.hh
movers / ErraserMinimizerMover.cc	scoring / constraints / util.hh
movers / ErraserMinimizerMover.cc	chemical / rna / util.hh
movers / ErraserMinimizerMover.cc	pose / rna / util.hh
movers / ErraserMinimizerMover.cc	pose / util.hh
movers / ErraserMinimizerMover.cc	sequence / util.hh
movers / ErraserMinimizerMover.cc	chemical / util.hh
movers / ErraserMinimizerMover.cc	chemical / VariantType.hh
movers / ErraserMinimizerMover.hh	id / AtomID.hh
movers / ErraserMinimizerMover.hh	chemical / ChemicalManager.hh
movers / ErraserMinimizerMover.hh	scoring / constraints / ConstraintSet.fwd.hh
movers / ErraserMinimizerMover.hh	kinematics / MoveMap.fwd.hh
movers / ErraserMinimizerMover.hh	pose / Pose.hh
movers / ErraserMinimizerMover.hh	chemical / ResidueType.fwd.hh
movers / ErraserMinimizerMover.hh	chemical / ResidueTypeSet.fwd.hh
movers / ErraserMinimizerMover.hh	scoring / ScoreFunction.fwd.hh
denovo / coarse / MultipleDomainMover.cc	id / AtomID.hh
denovo / coarse / MultipleDomainMover.cc	pose / toolbox / AtomID_Mapper.hh
denovo / coarse / MultipleDomainMover.cc	pose / toolbox / AtomLevelDomainMap.hh
denovo / coarse / MultipleDomainMover.cc	conformation / Conformation.hh
denovo / coarse / MultipleDomainMover.cc	kinematics / FoldTree.hh
denovo / coarse / MultipleDomainMover.cc	kinematics / Jump.hh
denovo / coarse / MultipleDomainMover.cc	id / NamedAtomID.hh
denovo / coarse / MultipleDomainMover.cc	pose / Pose.hh
denovo / coarse / MultipleDomainMover.cc	conformation / Residue.hh
denovo / coarse / MultipleDomainMover.cc	kinematics / Stub.hh
denovo / coarse / MultipleDomainMover.cc	types.hh
denovo / coarse / MultipleDomainMover.hh	pose / toolbox / AtomLevelDomainMap.hh
denovo / coarse / MultipleDomainMover.hh	pose / Pose.fwd.hh
denovo / coarse / MultipleDomainMover.hh	types.hh
movers / RNA_Coarsify.cc	id / AtomID.hh
movers / RNA_Coarsify.cc	chemical / ChemicalManager.hh
movers / RNA_Coarsify.cc	kinematics / FoldTree.hh
movers / RNA_Coarsify.cc	import_pose / import_pose.hh
movers / RNA_Coarsify.cc	pose / Pose.hh
movers / RNA_Coarsify.cc	conformation / Residue.hh
movers / RNA_Coarsify.cc	chemical / ResidueTypeSet.hh
movers / RNA_Coarsify.cc	pose / rna / util.hh
movers / RNA_Coarsify.cc	pose / util.hh
movers / RNA_Coarsify.cc	chemical / rna / util.hh
movers / RNA_Coarsify.hh	pose / Pose.fwd.hh
setup / RNA_CSA_JobDistributor.cc	scoring / Energies.hh
setup / RNA_CSA_JobDistributor.cc	io / silent / EnergyNames.hh
setup / RNA_CSA_JobDistributor.cc	pose / extra_pose_info_util.hh
setup / RNA_CSA_JobDistributor.cc	pose / Pose.hh
setup / RNA_CSA_JobDistributor.cc	io / silent / SilentFileData.hh
setup / RNA_CSA_JobDistributor.cc	io / silent / SilentFileOptions.hh
setup / RNA_CSA_JobDistributor.cc	io / silent / SilentStruct.hh
setup / RNA_CSA_JobDistributor.cc	io / silent / util.hh
setup / RNA_CSA_JobDistributor.hh	io / silent / SilentFileData.fwd.hh
setup / RNA_CSA_JobDistributor.hh	io / silent / SilentStruct.fwd.hh
movers / RNA_Decoarsify.cc	pose / annotated_sequence.hh
movers / RNA_Decoarsify.cc	id / AtomID.hh
movers / RNA_Decoarsify.cc	chemical / ChemicalManager.hh
movers / RNA_Decoarsify.cc	kinematics / FoldTree.hh
movers / RNA_Decoarsify.cc	import_pose / import_pose.hh
movers / RNA_Decoarsify.cc	pose / Pose.hh
movers / RNA_Decoarsify.cc	conformation / Residue.hh
movers / RNA_Decoarsify.cc	chemical / ResidueTypeSet.hh
movers / RNA_Decoarsify.cc	kinematics / Stub.hh
movers / RNA_Decoarsify.cc	pose / rna / util.hh
movers / RNA_Decoarsify.cc	pose / util.hh
movers / RNA_Decoarsify.cc	chemical / rna / util.hh
movers / RNA_Decoarsify.hh	pose / Pose.fwd.hh
denovo / movers / RNA_DeNovoMasterMover.cc	pose / toolbox / AtomLevelDomainMap.hh
denovo / movers / RNA_DeNovoMasterMover.cc	scoring / Energies.hh
denovo / movers / RNA_DeNovoMasterMover.cc	fragment / rna / FullAtomRNA_Fragments.hh
denovo / movers / RNA_DeNovoMasterMover.cc	kinematics / MoveMap.hh
denovo / movers / RNA_DeNovoMasterMover.cc	pose / Pose.hh
denovo / movers / RNA_DeNovoMasterMover.cc	conformation / Residue.hh
denovo / movers / RNA_DeNovoMasterMover.cc	import_pose / RNA_BasePairHandler.hh
denovo / movers / RNA_DeNovoMasterMover.cc	import_pose / libraries / RNA_ChunkLibrary.hh
denovo / movers / RNA_DeNovoMasterMover.cc	import_pose / options / RNA_FragmentMonteCarloOptions.hh
denovo / movers / RNA_DeNovoMasterMover.cc	fragment / rna / RNA_Fragments.hh
denovo / movers / RNA_DeNovoMasterMover.cc	import_pose / libraries / RNA_JumpLibrary.hh
denovo / movers / RNA_DeNovoMasterMover.cc	import_pose / RNA_JumpMover.hh
denovo / movers / RNA_DeNovoMasterMover.cc	import_pose / libraries / RNA_LibraryManager.hh
denovo / movers / RNA_DeNovoMasterMover.cc	scoring / ScoreFunction.hh
denovo / movers / RNA_DeNovoMasterMover.cc	scoring / ScoreFunctionFactory.hh
denovo / movers / RNA_DeNovoMasterMover.cc	pose / rna / util.hh
denovo / movers / RNA_DeNovoMasterMover.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
denovo / movers / RNA_DeNovoMasterMover.hh	kinematics / FoldTree.hh
denovo / movers / RNA_DeNovoMasterMover.hh	pose / Pose.fwd.hh
denovo / movers / RNA_DeNovoMasterMover.hh	import_pose / RNA_BasePairHandler.fwd.hh
denovo / movers / RNA_DeNovoMasterMover.hh	import_pose / libraries / RNA_ChunkLibrary.fwd.hh
denovo / movers / RNA_DeNovoMasterMover.hh	import_pose / options / RNA_FragmentMonteCarloOptions.fwd.hh
denovo / movers / RNA_DeNovoMasterMover.hh	fragment / rna / RNA_Fragments.fwd.hh
denovo / movers / RNA_DeNovoMasterMover.hh	import_pose / RNA_JumpMover.fwd.hh
denovo / movers / RNA_DeNovoMasterMover.hh	scoring / ScoreFunction.fwd.hh
denovo / movers / RNA_DeNovoMasterMover.hh	types.hh
movers / RNA_DeNovoOptimizer.cc	pose / Pose.hh
movers / RNA_DeNovoOptimizer.cc	import_pose / options / RNA_FragmentMonteCarloOptions.hh
movers / RNA_DeNovoOptimizer.cc	scoring / ScoreFunctionFactory.hh
movers / RNA_DeNovoOptimizer.cc	pose / full_model_info / util.hh
movers / RNA_DeNovoOptimizer.hh	import_pose / options / RNA_FragmentMonteCarloOptions.fwd.hh
movers / RNA_DeNovoOptimizer.hh	scoring / ScoreFunction.fwd.hh
denovo / RNA_DeNovoPoseInitializer.cc	pose / annotated_sequence.hh
denovo / RNA_DeNovoPoseInitializer.cc	kinematics / tree / Atom.hh
denovo / RNA_DeNovoPoseInitializer.cc	id / AtomID.hh
denovo / RNA_DeNovoPoseInitializer.cc	pose / toolbox / AtomLevelDomainMap.hh
denovo / RNA_DeNovoPoseInitializer.cc	kinematics / AtomTree.hh
denovo / RNA_DeNovoPoseInitializer.cc	chemical / ChemicalManager.hh
denovo / RNA_DeNovoPoseInitializer.cc	import_pose / libraries / ChunkSet.hh
denovo / RNA_DeNovoPoseInitializer.cc	kinematics / FoldTree.hh
denovo / RNA_DeNovoPoseInitializer.cc	pose / full_model_info / FullModelInfo.hh
denovo / RNA_DeNovoPoseInitializer.cc	pose / full_model_info / FullModelParameters.hh
denovo / RNA_DeNovoPoseInitializer.cc	import_pose / import_pose.hh
denovo / RNA_DeNovoPoseInitializer.cc	pose / MiniPose.hh
denovo / RNA_DeNovoPoseInitializer.cc	id / NamedAtomID.hh
denovo / RNA_DeNovoPoseInitializer.cc	pose / PDBInfo.hh
denovo / RNA_DeNovoPoseInitializer.cc	pose / Pose.hh
denovo / RNA_DeNovoPoseInitializer.cc	conformation / Residue.hh
denovo / RNA_DeNovoPoseInitializer.cc	conformation / ResidueFactory.hh
denovo / RNA_DeNovoPoseInitializer.cc	chemical / ResidueProperties.hh
denovo / RNA_DeNovoPoseInitializer.cc	chemical / ResidueTypeSet.hh
denovo / RNA_DeNovoPoseInitializer.cc	import_pose / RNA_BasePairHandler.hh
denovo / RNA_DeNovoPoseInitializer.cc	import_pose / libraries / RNA_ChunkLibrary.hh
denovo / RNA_DeNovoPoseInitializer.cc	import_pose / RNA_DeNovoParameters.hh
denovo / RNA_DeNovoPoseInitializer.cc	import_pose / RNA_JumpMover.hh
denovo / RNA_DeNovoPoseInitializer.cc	import_pose / libraries / RNA_LibraryManager.hh
denovo / RNA_DeNovoPoseInitializer.cc	scoring / rna / RNA_LowResolutionPotential.hh
denovo / RNA_DeNovoPoseInitializer.cc	scoring / rna / RNA_ScoringInfo.hh
denovo / RNA_DeNovoPoseInitializer.cc	pose / rna / secstruct_legacy / RNA_SecStructLegacyInfo.hh
denovo / RNA_DeNovoPoseInitializer.cc	scoring / ScoreType.hh
denovo / RNA_DeNovoPoseInitializer.cc	id / TorsionID.hh
denovo / RNA_DeNovoPoseInitializer.cc	types.hh
denovo / RNA_DeNovoPoseInitializer.cc	chemical / rna / util.hh
denovo / RNA_DeNovoPoseInitializer.cc	pose / full_model_info / util.hh
denovo / RNA_DeNovoPoseInitializer.cc	pose / rna / util.hh
denovo / RNA_DeNovoPoseInitializer.cc	pose / copydofs / util.hh
denovo / RNA_DeNovoPoseInitializer.cc	pose / variant_util.hh
denovo / RNA_DeNovoPoseInitializer.cc	chemical / VariantType.hh
denovo / RNA_DeNovoPoseInitializer.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
denovo / RNA_DeNovoPoseInitializer.hh	pose / rna / BasePairStep.hh
denovo / RNA_DeNovoPoseInitializer.hh	kinematics / FoldTree.fwd.hh
denovo / RNA_DeNovoPoseInitializer.hh	pose / Pose.fwd.hh
denovo / RNA_DeNovoPoseInitializer.hh	import_pose / libraries / RNA_ChunkLibrary.fwd.hh
denovo / RNA_DeNovoPoseInitializer.hh	import_pose / RNA_DeNovoParameters.hh
denovo / RNA_DeNovoPoseInitializer.hh	import_pose / RNA_JumpMover.fwd.hh
denovo / RNA_DeNovoPoseInitializer.hh	types.hh
denovo / RNA_DeNovoProtocol.cc	id / AtomID.hh
denovo / RNA_DeNovoProtocol.cc	id / AtomID_Map.hh
denovo / RNA_DeNovoProtocol.cc	io / silent / BinarySilentStruct.hh
denovo / RNA_DeNovoProtocol.cc	scoring / constraints / ConstraintSet.hh
denovo / RNA_DeNovoProtocol.cc	id / DOF_ID.hh
denovo / RNA_DeNovoProtocol.cc	scoring / Energies.hh
denovo / RNA_DeNovoProtocol.cc	scoring / EnergyMap.hh
denovo / RNA_DeNovoProtocol.cc	pose / extra_pose_info_util.hh
denovo / RNA_DeNovoProtocol.cc	fragment / rna / FullAtomRNA_Fragments.hh
denovo / RNA_DeNovoProtocol.cc	kinematics / MoveMap.hh
denovo / RNA_DeNovoProtocol.cc	io / pdb / pdb_writer.hh
denovo / RNA_DeNovoProtocol.cc	pose / Pose.hh
denovo / RNA_DeNovoProtocol.cc	conformation / Residue.hh
denovo / RNA_DeNovoProtocol.cc	scoring / rms_util.hh
denovo / RNA_DeNovoProtocol.cc	pose / rna / RNA_BaseDoubletClasses.hh
denovo / RNA_DeNovoProtocol.cc	pose / rna / RNA_BasePairClassifier.hh
denovo / RNA_DeNovoProtocol.cc	import_pose / RNA_BasePairHandler.hh
denovo / RNA_DeNovoProtocol.cc	scoring / rna / chemical_shift / RNA_ChemicalShiftPotential.hh
denovo / RNA_DeNovoProtocol.cc	import_pose / libraries / RNA_ChunkLibrary.hh
denovo / RNA_DeNovoProtocol.cc	import_pose / RNA_DeNovoParameters.hh
denovo / RNA_DeNovoProtocol.cc	import_pose / options / RNA_DeNovoProtocolOptions.hh
denovo / RNA_DeNovoProtocol.cc	scoring / rna / RNA_ScoringInfo.hh
denovo / RNA_DeNovoProtocol.cc	io / silent / RNA_SilentStruct.hh
denovo / RNA_DeNovoProtocol.cc	io / silent / ScoreFileSilentStruct.hh
denovo / RNA_DeNovoProtocol.cc	scoring / ScoreFunction.hh
denovo / RNA_DeNovoProtocol.cc	scoring / ScoreFunctionFactory.hh
denovo / RNA_DeNovoProtocol.cc	scoring / ScoreType.hh
denovo / RNA_DeNovoProtocol.cc	scoring / ScoringManager.hh
denovo / RNA_DeNovoProtocol.cc	io / silent / SilentFileData.hh
denovo / RNA_DeNovoProtocol.cc	io / silent / SilentFileOptions.hh
denovo / RNA_DeNovoProtocol.cc	util / SwitchResidueTypeSet.hh
denovo / RNA_DeNovoProtocol.cc	types.hh
denovo / RNA_DeNovoProtocol.cc	io / silent / util.hh
denovo / RNA_DeNovoProtocol.cc	pose / rna / util.hh
denovo / RNA_DeNovoProtocol.cc	chemical / rna / util.hh
denovo / RNA_DeNovoProtocol.hh	id / AtomID.fwd.hh
denovo / RNA_DeNovoProtocol.hh	pose / Pose.fwd.hh
denovo / RNA_DeNovoProtocol.hh	import_pose / options / RNA_DeNovoProtocolOptions.fwd.hh
denovo / RNA_DeNovoProtocol.hh	scoring / ScoreFunction.fwd.hh
denovo / RNA_DeNovoProtocol.hh	io / silent / silent.fwd.hh
denovo / RNA_DeNovoProtocol.hh	types.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	pose / annotated_sequence.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	id / AtomID.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	scoring / constraints / AtomPairConstraint.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	pose / datacache / CacheableDataType.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	chemical / ChemicalManager.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	scoring / constraints / ConstraintIO.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	scoring / constraints / ConstraintSet.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	scoring / Energies.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	pose / extra_pose_info_util.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	scoring / func / FadeFunc.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	pose / full_model_info / FullModelInfo.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	pose / full_model_info / FullModelParameters.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	import_pose / import_pose.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	pose / rna / leontis_westhof_util.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	id / NamedAtomID.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	pose / PDBInfo.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	pose / Pose.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	chemical / ResidueType.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	chemical / ResidueTypeSet.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	pose / rna / RNA_BasePairClassifier.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	import_pose / RNA_BasePairHandler.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	scoring / rna / chemical_shift / RNA_ChemicalShiftPotential.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	import_pose / libraries / RNA_ChunkLibrary.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	io / rna / RNA_DataReader.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	import_pose / RNA_DeNovoParameters.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	import_pose / options / RNA_DeNovoProtocolOptions.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	import_pose / RNA_HelixAssembler.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	scoring / rna / RNA_ScoringInfo.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	pose / rna / RNA_SecStruct.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	scoring / ScoreFunction.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	scoring / ScoreFunctionFactory.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	scoring / ScoringManager.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	id / SequenceMapping.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	pose / subpose_manipulation_util.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	pose / util.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	pose / rna / util.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	scoring / constraints / util.hh
denovo / movers / RNA_DeNovoProtocolMover.cc	sequence / util.hh
denovo / movers / RNA_DeNovoProtocolMover.hh	pose / rna / BasePair.hh
denovo / movers / RNA_DeNovoProtocolMover.hh	kinematics / FoldTree.fwd.hh
denovo / movers / RNA_DeNovoProtocolMover.hh	pose / full_model_info / FullModelParameters.fwd.hh
denovo / movers / RNA_DeNovoProtocolMover.hh	pose / Pose.fwd.hh
denovo / movers / RNA_DeNovoProtocolMover.hh	chemical / ResidueTypeSet.fwd.hh
denovo / movers / RNA_DeNovoProtocolMover.hh	import_pose / RNA_DeNovoParameters.fwd.hh
denovo / movers / RNA_DeNovoProtocolMover.hh	import_pose / options / RNA_DeNovoProtocolOptions.fwd.hh
denovo / movers / RNA_DeNovoProtocolMover.hh	pose / rna / RNA_SecStruct.fwd.hh
denovo / movers / RNA_DeNovoProtocolMover.hh	scoring / ScoreFunction.fwd.hh
denovo / movers / RNA_DeNovoProtocolMover.hh	types.hh
denovo / RNA_FragmentMonteCarlo.cc	pose / toolbox / AtomLevelDomainMap.hh
denovo / RNA_FragmentMonteCarlo.cc	import_pose / libraries / BasePairStepLibrary.hh
denovo / RNA_FragmentMonteCarlo.cc	chemical / ChemicalManager.hh
denovo / RNA_FragmentMonteCarlo.cc	import_pose / libraries / ChunkSet.hh
denovo / RNA_FragmentMonteCarlo.cc	scoring / constraints / ConstraintSet.hh
denovo / RNA_FragmentMonteCarlo.cc	scoring / constraints / CoordinateConstraint.hh
denovo / RNA_FragmentMonteCarlo.cc	pose / extra_pose_info_util.hh
denovo / RNA_FragmentMonteCarlo.cc	import_pose / import_pose.hh
denovo / RNA_FragmentMonteCarlo.cc	kinematics / Jump.hh
denovo / RNA_FragmentMonteCarlo.cc	pose / PDBInfo.hh
denovo / RNA_FragmentMonteCarlo.cc	pose / Pose.hh
denovo / RNA_FragmentMonteCarlo.cc	scoring / rms_util.hh
denovo / RNA_FragmentMonteCarlo.cc	import_pose / RNA_BasePairHandler.hh
denovo / RNA_FragmentMonteCarlo.cc	import_pose / libraries / RNA_ChunkLibrary.hh
denovo / RNA_FragmentMonteCarlo.cc	fragment / rna / RNA_FragmentHomologyExclusion.hh
denovo / RNA_FragmentMonteCarlo.cc	import_pose / options / RNA_FragmentMonteCarloOptions.hh
denovo / RNA_FragmentMonteCarlo.cc	import_pose / RNA_JumpMover.hh
denovo / RNA_FragmentMonteCarlo.cc	import_pose / libraries / RNA_LibraryManager.hh
denovo / RNA_FragmentMonteCarlo.cc	scoring / rna / RNA_ScoringInfo.hh
denovo / RNA_FragmentMonteCarlo.cc	pose / rna / secstruct_legacy / RNA_SecStructLegacyInfo.hh
denovo / RNA_FragmentMonteCarlo.cc	scoring / ScoreFunctionFactory.hh
denovo / RNA_FragmentMonteCarlo.cc	kinematics / ShortestPathInFoldTree.hh
denovo / RNA_FragmentMonteCarlo.cc	util / SwitchResidueTypeSet.hh
denovo / RNA_FragmentMonteCarlo.cc	pose / copydofs / util.hh
denovo / RNA_FragmentMonteCarlo.cc	pose / util.hh
denovo / RNA_FragmentMonteCarlo.cc	pose / rna / util.hh
denovo / RNA_FragmentMonteCarlo.hh	id / AtomID.fwd.hh
denovo / RNA_FragmentMonteCarlo.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
denovo / RNA_FragmentMonteCarlo.hh	scoring / constraints / ConstraintSet.fwd.hh
denovo / RNA_FragmentMonteCarlo.hh	kinematics / FoldTree.hh
denovo / RNA_FragmentMonteCarlo.hh	import_pose / RNA_BasePairHandler.fwd.hh
denovo / RNA_FragmentMonteCarlo.hh	import_pose / libraries / RNA_ChunkLibrary.fwd.hh
denovo / RNA_FragmentMonteCarlo.hh	import_pose / options / RNA_FragmentMonteCarloOptions.fwd.hh
denovo / RNA_FragmentMonteCarlo.hh	scoring / ScoreFunction.fwd.hh
denovo / RNA_FragmentMonteCarlo.hh	types.hh
denovo / output / RNA_FragmentMonteCarloOutputter.cc	kinematics / Jump.hh
denovo / output / RNA_FragmentMonteCarloOutputter.cc	pose / Pose.hh
denovo / output / RNA_FragmentMonteCarloOutputter.cc	import_pose / options / RNA_FragmentMonteCarloOptions.hh
denovo / output / RNA_FragmentMonteCarloOutputter.cc	kinematics / RT.hh
denovo / output / RNA_FragmentMonteCarloOutputter.cc	scoring / ScoreFunction.hh
denovo / output / RNA_FragmentMonteCarloOutputter.cc	kinematics / Stub.hh
denovo / output / RNA_FragmentMonteCarloOutputter.cc	pose / rna / util.hh
denovo / output / RNA_FragmentMonteCarloOutputter.hh	import_pose / options / RNA_FragmentMonteCarloOptions.fwd.hh
denovo / output / RNA_FragmentMonteCarloOutputter.hh	kinematics / RT.fwd.hh
denovo / output / RNA_FragmentMonteCarloOutputter.hh	scoring / ScoreFunction.fwd.hh
denovo / output / RNA_FragmentMonteCarloOutputter.hh	kinematics / Stub.fwd.hh
denovo / output / RNA_FragmentMonteCarloOutputter.hh	pose / rna / StubStubType.fwd.hh
denovo / movers / RNA_FragmentMover.cc	id / AtomID.hh
denovo / movers / RNA_FragmentMover.cc	pose / toolbox / AtomLevelDomainMap.fwd.hh
denovo / movers / RNA_FragmentMover.cc	pose / toolbox / AtomLevelDomainMap.hh
denovo / movers / RNA_FragmentMover.cc	kinematics / FoldTree.hh
denovo / movers / RNA_FragmentMover.cc	pose / full_model_info / FullModelInfo.hh
denovo / movers / RNA_FragmentMover.cc	pose / full_model_info / FullModelParameters.hh
denovo / movers / RNA_FragmentMover.cc	pose / full_model_info / FullModelParameterType.hh
denovo / movers / RNA_FragmentMover.cc	kinematics / Jump.hh
denovo / movers / RNA_FragmentMover.cc	pose / Pose.hh
denovo / movers / RNA_FragmentMover.cc	conformation / Residue.hh
denovo / movers / RNA_FragmentMover.cc	fragment / rna / RNA_Fragments.hh
denovo / movers / RNA_FragmentMover.cc	fragment / rna / RNA_MatchType.hh
denovo / movers / RNA_FragmentMover.cc	types.hh
denovo / movers / RNA_FragmentMover.fwd.hh	types.hh
denovo / movers / RNA_FragmentMover.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
denovo / movers / RNA_FragmentMover.hh	fragment / rna / FullAtomRNA_Fragments.hh
denovo / movers / RNA_FragmentMover.hh	pose / Pose.fwd.hh
denovo / movers / RNA_FragmentMover.hh	fragment / rna / RNA_FragmentHomologyExclusion.hh
denovo / movers / RNA_FragmentMover.hh	fragment / rna / RNA_Fragments.fwd.hh
denovo / movers / RNA_FragmentMover.hh	scoring / ScoreFunction.fwd.hh
denovo / movers / RNA_FragmentMover.hh	types.hh
denovo / movers / RNA_HelixMover.cc	kinematics / Jump.hh
denovo / movers / RNA_HelixMover.cc	pose / Pose.hh
denovo / movers / RNA_HelixMover.cc	conformation / Residue.hh
denovo / movers / RNA_HelixMover.cc	import_pose / RNA_BasePairHandler.hh
denovo / movers / RNA_HelixMover.cc	types.hh
denovo / movers / RNA_HelixMover.cc	pose / rna / util.hh
denovo / movers / RNA_HelixMover.hh	kinematics / FoldTree.hh
denovo / movers / RNA_HelixMover.hh	pose / Pose.fwd.hh
denovo / movers / RNA_HelixMover.hh	import_pose / RNA_BasePairHandler.fwd.hh
denovo / movers / RNA_HelixMover.hh	types.hh
setup / RNA_JobDistributor.hh	types.hh
movers / RNA_LoopCloser.cc	kinematics / tree / Atom.hh
movers / RNA_LoopCloser.cc	id / AtomID.hh
movers / RNA_LoopCloser.cc	id / AtomID_Map.hh
movers / RNA_LoopCloser.cc	pose / toolbox / AtomLevelDomainMap.hh
movers / RNA_LoopCloser.cc	kinematics / AtomTree.hh
movers / RNA_LoopCloser.cc	optimization / AtomTreeMinimizer.hh
movers / RNA_LoopCloser.cc	scoring / methods / chainbreak_util.hh
movers / RNA_LoopCloser.cc	conformation / Conformation.hh
movers / RNA_LoopCloser.cc	scoring / constraints / Constraint.fwd.hh
movers / RNA_LoopCloser.cc	scoring / constraints / ConstraintSet.hh
movers / RNA_LoopCloser.cc	id / DOF_ID.hh
movers / RNA_LoopCloser.cc	kinematics / FoldTree.hh
movers / RNA_LoopCloser.cc	optimization / MinimizerOptions.hh
movers / RNA_LoopCloser.cc	kinematics / MoveMap.hh
movers / RNA_LoopCloser.cc	id / NamedAtomID.hh
movers / RNA_LoopCloser.cc	pose / Pose.hh
movers / RNA_LoopCloser.cc	conformation / Residue.hh
movers / RNA_LoopCloser.cc	import_pose / libraries / RNA_ChunkLibrary.hh
movers / RNA_LoopCloser.cc	scoring / ScoreFunction.fwd.hh
movers / RNA_LoopCloser.cc	scoring / ScoreFunction.hh
movers / RNA_LoopCloser.cc	scoring / ScoreFunctionFactory.hh
movers / RNA_LoopCloser.cc	types.hh
movers / RNA_LoopCloser.cc	pose / util.hh
movers / RNA_LoopCloser.cc	scoring / constraints / util.hh
movers / RNA_LoopCloser.cc	chemical / rna / util.hh
movers / RNA_LoopCloser.cc	chemical / VariantType.hh
movers / RNA_LoopCloser.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
movers / RNA_LoopCloser.hh	pose / Pose.fwd.hh
movers / RNA_LoopCloser.hh	scoring / ScoreFunction.fwd.hh
movers / RNA_LoopCloser.hh	types.hh
denovo / movers / RNA_Minimizer.cc	id / AtomID.hh
denovo / movers / RNA_Minimizer.cc	id / AtomID_Map.hh
denovo / movers / RNA_Minimizer.cc	pose / toolbox / AtomLevelDomainMap.hh
denovo / movers / RNA_Minimizer.cc	optimization / AtomTreeMinimizer.hh
denovo / movers / RNA_Minimizer.cc	optimization / CartesianMinimizer.hh
denovo / movers / RNA_Minimizer.cc	conformation / Conformation.hh
denovo / movers / RNA_Minimizer.cc	scoring / constraints / ConstraintSet.fwd.hh
denovo / movers / RNA_Minimizer.cc	scoring / constraints / ConstraintSet.hh
denovo / movers / RNA_Minimizer.cc	id / DOF_ID.hh
denovo / movers / RNA_Minimizer.cc	kinematics / FoldTree.hh
denovo / movers / RNA_Minimizer.cc	pose / full_model_info / FullModelInfo.hh
denovo / movers / RNA_Minimizer.cc	scoring / func / HarmonicFunc.hh
denovo / movers / RNA_Minimizer.cc	optimization / MinimizerOptions.hh
denovo / movers / RNA_Minimizer.cc	kinematics / MoveMap.hh
denovo / movers / RNA_Minimizer.cc	id / NamedAtomID.hh
denovo / movers / RNA_Minimizer.cc	pack / pack_rotamers.hh
denovo / movers / RNA_Minimizer.cc	pack / task / PackerTask.hh
denovo / movers / RNA_Minimizer.cc	pose / Pose.hh
denovo / movers / RNA_Minimizer.cc	conformation / Residue.hh
denovo / movers / RNA_Minimizer.cc	import_pose / libraries / RNA_ChunkLibrary.hh
denovo / movers / RNA_Minimizer.cc	import_pose / options / RNA_MinimizerOptions.hh
denovo / movers / RNA_Minimizer.cc	pack / rotamer_trials.hh
denovo / movers / RNA_Minimizer.cc	scoring / ScoreFunction.fwd.hh
denovo / movers / RNA_Minimizer.cc	scoring / ScoreFunction.hh
denovo / movers / RNA_Minimizer.cc	scoring / ScoreFunctionFactory.hh
denovo / movers / RNA_Minimizer.cc	scoring / ScoreType.hh
denovo / movers / RNA_Minimizer.cc	pack / task / TaskFactory.hh
denovo / movers / RNA_Minimizer.cc	id / TorsionID.hh
denovo / movers / RNA_Minimizer.cc	types.hh
denovo / movers / RNA_Minimizer.cc	scoring / constraints / util.hh
denovo / movers / RNA_Minimizer.cc	pose / rna / util.hh
denovo / movers / RNA_Minimizer.cc	pose / util.hh
denovo / movers / RNA_Minimizer.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
denovo / movers / RNA_Minimizer.hh	kinematics / MoveMap.fwd.hh
denovo / movers / RNA_Minimizer.hh	pose / Pose.fwd.hh
denovo / movers / RNA_Minimizer.hh	import_pose / options / RNA_MinimizerOptions.hh
denovo / movers / RNA_Minimizer.hh	scoring / ScoreFunction.hh
setup / RNA_MonteCarloJobDistributor.cc	pose / Pose.hh
setup / RNA_MonteCarloJobDistributor.cc	io / silent / util.hh
setup / RNA_MonteCarloJobDistributor.hh	types.hh
denovo / movers / RNA_Relaxer.cc	scoring / constraints / ConstraintSet.hh
denovo / movers / RNA_Relaxer.cc	kinematics / Jump.hh
denovo / movers / RNA_Relaxer.cc	pose / Pose.hh
denovo / movers / RNA_Relaxer.cc	scoring / rms_util.hh
denovo / movers / RNA_Relaxer.cc	scoring / ScoreFunction.fwd.hh
denovo / movers / RNA_Relaxer.cc	scoring / ScoreFunction.hh
denovo / movers / RNA_Relaxer.cc	scoring / ScoreFunctionFactory.hh
denovo / movers / RNA_Relaxer.cc	scoring / ScoreType.hh
denovo / movers / RNA_Relaxer.cc	types.hh
denovo / movers / RNA_Relaxer.hh	pose / Pose.fwd.hh
denovo / movers / RNA_Relaxer.hh	types.hh
movers / RNAIdealizeMover.cc	scoring / constraints / AngleConstraint.hh
movers / RNAIdealizeMover.cc	pose / annotated_sequence.hh
movers / RNAIdealizeMover.cc	kinematics / tree / Atom.hh
movers / RNAIdealizeMover.cc	id / AtomID.hh
movers / RNAIdealizeMover.cc	scoring / constraints / AtomPairConstraint.hh
movers / RNAIdealizeMover.cc	kinematics / AtomTree.hh
movers / RNAIdealizeMover.cc	chemical / ChemicalManager.fwd.hh
movers / RNAIdealizeMover.cc	scoring / func / CircularHarmonicFunc.hh
movers / RNAIdealizeMover.cc	conformation / Conformation.hh
movers / RNAIdealizeMover.cc	scoring / constraints / ConstraintSet.hh
movers / RNAIdealizeMover.cc	scoring / constraints / CoordinateConstraint.hh
movers / RNAIdealizeMover.cc	scoring / constraints / DihedralConstraint.hh
movers / RNAIdealizeMover.cc	scoring / func / FlatHarmonicFunc.hh
movers / RNAIdealizeMover.cc	kinematics / FoldTree.hh
movers / RNAIdealizeMover.cc	scoring / func / HarmonicFunc.hh
movers / RNAIdealizeMover.cc	kinematics / MoveMap.hh
movers / RNAIdealizeMover.cc	pose / Pose.hh
movers / RNAIdealizeMover.cc	conformation / Residue.hh
movers / RNAIdealizeMover.cc	conformation / ResidueFactory.hh
movers / RNAIdealizeMover.cc	chemical / ResidueType.hh
movers / RNAIdealizeMover.cc	scoring / rms_util.hh
movers / RNAIdealizeMover.cc	pose / rna / RNA_SuiteName.hh
movers / RNAIdealizeMover.cc	scoring / ScoreFunction.hh
movers / RNAIdealizeMover.cc	scoring / ScoreFunctionFactory.hh
movers / RNAIdealizeMover.cc	chemical / rna / util.hh
movers / RNAIdealizeMover.cc	pose / util.hh
movers / RNAIdealizeMover.hh	id / AtomID.fwd.hh
movers / RNAIdealizeMover.hh	pose / Pose.hh
movers / RNAThreadAndMinimizeMover.cc	pose / annotated_sequence.hh
movers / RNAThreadAndMinimizeMover.cc	kinematics / tree / Atom.hh
movers / RNAThreadAndMinimizeMover.cc	id / AtomID.hh
movers / RNAThreadAndMinimizeMover.cc	id / AtomID_Map.hh
movers / RNAThreadAndMinimizeMover.cc	kinematics / AtomTree.hh
movers / RNAThreadAndMinimizeMover.cc	chemical / ChemicalManager.hh
movers / RNAThreadAndMinimizeMover.cc	scoring / constraints / ConstraintSet.hh
movers / RNAThreadAndMinimizeMover.cc	scoring / constraints / CoordinateConstraint.hh
movers / RNAThreadAndMinimizeMover.cc	pose / extra_pose_info_util.hh
movers / RNAThreadAndMinimizeMover.cc	kinematics / FoldTree.hh
movers / RNAThreadAndMinimizeMover.cc	scoring / func / HarmonicFunc.hh
movers / RNAThreadAndMinimizeMover.cc	kinematics / Jump.hh
movers / RNAThreadAndMinimizeMover.cc	kinematics / MoveMap.hh
movers / RNAThreadAndMinimizeMover.cc	io / NomenclatureManager.hh
movers / RNAThreadAndMinimizeMover.cc	pose / PDBInfo.hh
movers / RNAThreadAndMinimizeMover.cc	pose / Pose.hh
movers / RNAThreadAndMinimizeMover.cc	conformation / ResidueFactory.hh
movers / RNAThreadAndMinimizeMover.cc	chemical / ResidueType.hh
movers / RNAThreadAndMinimizeMover.cc	chemical / ResidueTypeSet.hh
movers / RNAThreadAndMinimizeMover.cc	scoring / rms_util.hh
movers / RNAThreadAndMinimizeMover.cc	scoring / ScoreFunction.hh
movers / RNAThreadAndMinimizeMover.cc	scoring / ScoreFunctionFactory.hh
movers / RNAThreadAndMinimizeMover.cc	sequence / Sequence.hh
movers / RNAThreadAndMinimizeMover.cc	sequence / util.hh
movers / RNAThreadAndMinimizeMover.cc	pose / rna / util.hh
movers / RNAThreadAndMinimizeMover.cc	pose / util.hh
movers / RNAThreadAndMinimizeMover.hh	chemical / ChemicalManager.fwd.hh
movers / RNAThreadAndMinimizeMover.hh	kinematics / MoveMap.fwd.hh
movers / RNAThreadAndMinimizeMover.hh	pose / Pose.fwd.hh
movers / RNAThreadAndMinimizeMover.hh	chemical / ResidueType.fwd.hh
movers / RNAThreadAndMinimizeMover.hh	chemical / ResidueTypeSet.fwd.hh
movers / RNAThreadAndMinimizeMover.hh	scoring / ScoreFunction.fwd.hh
movers / RNAThreadAndMinimizeMover.hh	sequence / Sequence.fwd.hh
denovo / movers / RNP_HighResMover.cc	scoring / constraints / ConstraintSet.hh
denovo / movers / RNP_HighResMover.cc	scoring / Energies.hh
denovo / movers / RNP_HighResMover.cc	kinematics / Jump.hh
denovo / movers / RNP_HighResMover.cc	kinematics / MoveMap.hh
denovo / movers / RNP_HighResMover.cc	pack / pack_rotamers.hh
denovo / movers / RNP_HighResMover.cc	pack / task / PackerTask.hh
denovo / movers / RNP_HighResMover.cc	pose / Pose.hh
denovo / movers / RNP_HighResMover.cc	conformation / Residue.hh
denovo / movers / RNP_HighResMover.cc	scoring / rms_util.hh
denovo / movers / RNP_HighResMover.cc	import_pose / options / RNA_FragmentMonteCarloOptions.fwd.hh
denovo / movers / RNP_HighResMover.cc	pack / rotamer_trials.hh
denovo / movers / RNP_HighResMover.cc	scoring / ScoreFunction.fwd.hh
denovo / movers / RNP_HighResMover.cc	scoring / ScoreFunction.hh
denovo / movers / RNP_HighResMover.cc	scoring / ScoreFunctionFactory.hh
denovo / movers / RNP_HighResMover.cc	scoring / ScoreType.hh
denovo / movers / RNP_HighResMover.cc	pack / task / TaskFactory.hh
denovo / movers / RNP_HighResMover.cc	types.hh
denovo / movers / RNP_HighResMover.hh	kinematics / FoldTree.hh
denovo / movers / RNP_HighResMover.hh	pose / Pose.fwd.hh
denovo / movers / RNP_HighResMover.hh	import_pose / options / RNA_FragmentMonteCarloOptions.hh
denovo / movers / RNP_HighResMover.hh	types.hh
denovo / util.cc	pose / annotated_sequence.hh
denovo / util.cc	kinematics / tree / Atom.hh
denovo / util.cc	id / AtomID.hh
denovo / util.cc	pose / toolbox / AtomLevelDomainMap.hh
denovo / util.cc	scoring / constraints / AtomPairConstraint.hh
denovo / util.cc	kinematics / AtomTree.hh
denovo / util.cc	pose / rna / BasePairStep.hh
denovo / util.cc	io / silent / BinarySilentStruct.hh
denovo / util.cc	chemical / ChemicalManager.hh
denovo / util.cc	scoring / constraints / ConstraintSet.fwd.hh
denovo / util.cc	scoring / methods / EnergyMethodOptions.hh
denovo / util.cc	scoring / func / FadeFunc.hh
denovo / util.cc	kinematics / FoldTree.hh
denovo / util.cc	scoring / func / HarmonicFunc.hh
denovo / util.cc	scoring / hbonds / HBondOptions.hh
denovo / util.cc	scoring / hbonds / hbonds.hh
denovo / util.cc	scoring / hbonds / HBondSet.hh
denovo / util.cc	import_pose / import_pose.hh
denovo / util.cc	kinematics / MoveMap.hh
denovo / util.cc	id / NamedAtomID.hh
denovo / util.cc	pose / PDBInfo.hh
denovo / util.cc	pose / Pose.hh
denovo / util.cc	conformation / Residue.hh
denovo / util.cc	conformation / ResidueFactory.hh
denovo / util.cc	import_pose / libraries / RNA_ChunkLibrary.hh
denovo / util.cc	chemical / rna / RNA_Info.hh
denovo / util.cc	fragment / rna / RNA_MatchType.hh
denovo / util.cc	scoring / rna / RNA_ScoringInfo.hh
denovo / util.cc	pose / rna / secstruct_legacy / RNA_SecStructLegacyInfo.hh
denovo / util.cc	scoring / ScoreFunction.hh
denovo / util.cc	scoring / ScoreFunctionFactory.hh
denovo / util.cc	io / silent / SilentFileData.hh
denovo / util.cc	io / silent / SilentFileOptions.hh
denovo / util.cc	id / TorsionID.hh
denovo / util.cc	types.hh
denovo / util.cc	chemical / rna / util.hh
denovo / util.cc	pose / rna / util.hh
denovo / util.cc	pose / variant_util.hh
denovo / util.cc	chemical / VariantType.hh
denovo / util.hh	id / AtomID.fwd.hh
denovo / util.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
denovo / util.hh	pose / rna / BasePair.hh
denovo / util.hh	pose / rna / BasePairStep.fwd.hh
denovo / util.hh	kinematics / FoldTree.fwd.hh
denovo / util.hh	kinematics / MoveMap.fwd.hh
util.hh	pose / Pose.fwd.hh
denovo / util.hh	pose / Pose.fwd.hh
denovo / util.hh	conformation / Residue.fwd.hh
denovo / util.hh	pose / rna / RNA_BaseDoubletClasses.hh
denovo / util.hh	scoring / ScoreFunction.fwd.hh
util.hh	types.hh
denovo / util.hh	types.hh