modeler → core Relation

File in src/protocols/stepwise/modeler	Includes file in src/core
rna / bulge / BulgeApplyMover.cc	pose / Pose.hh
rna / bulge / BulgeApplyMover.cc	scoring / constraints / util.hh
rna / bulge / BulgeApplyMover.cc	pose / rna / util.hh
rna / bulge / BulgeUnApplyMover.cc	pose / Pose.hh
rna / bulge / BulgeUnApplyMover.cc	scoring / constraints / util.hh
rna / bulge / BulgeUnApplyMover.cc	pose / rna / util.hh
constraint_util.cc	scoring / constraints / Constraint.hh
constraint_util.cc	scoring / constraints / ConstraintIO.hh
constraint_util.cc	scoring / constraints / ConstraintSet.hh
constraint_util.cc	scoring / constraints / CoordinateConstraint.hh
constraint_util.cc	pose / Pose.hh
constraint_util.cc	scoring / ScoreFunction.hh
constraint_util.cc	id / SequenceMapping.hh
constraint_util.cc	pose / util.hh
constraint_util.cc	scoring / constraints / util.hh
constraint_util.hh	scoring / constraints / ConstraintSet.fwd.hh
constraint_util.hh	pose / Pose.fwd.hh
constraint_util.hh	scoring / ScoreFunction.fwd.hh
constraint_util.hh	types.hh
rna / rigid_body / FloatingBaseClasses.hh	types.hh
protein / InputStreamWithResidueInfo.cc	import_pose / pose_stream / ExtendedPoseInputStream.hh
protein / InputStreamWithResidueInfo.cc	import_pose / pose_stream / PDBPoseInputStream.hh
protein / InputStreamWithResidueInfo.cc	pose / Pose.hh
protein / InputStreamWithResidueInfo.cc	import_pose / pose_stream / PoseInputStream.fwd.hh
protein / InputStreamWithResidueInfo.cc	chemical / ResidueType.hh
protein / InputStreamWithResidueInfo.cc	scoring / rms_util.hh
protein / InputStreamWithResidueInfo.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
protein / InputStreamWithResidueInfo.cc	types.hh
protein / InputStreamWithResidueInfo.cc	pose / copydofs / util.hh
protein / InputStreamWithResidueInfo.cc	pose / rna / util.hh
protein / InputStreamWithResidueInfo.cc	pose / variant_util.hh
protein / InputStreamWithResidueInfo.hh	pose / Pose.fwd.hh
protein / InputStreamWithResidueInfo.hh	import_pose / pose_stream / PoseInputStream.fwd.hh
protein / InputStreamWithResidueInfo.hh	chemical / ResidueTypeSet.fwd.hh
protein / InputStreamWithResidueInfo.hh	types.hh
protein / MainChainTorsionSet.cc	io / silent / BinarySilentStruct.hh
protein / MainChainTorsionSet.cc	types.hh
protein / MainChainTorsionSet.hh	types.hh
rna / phosphate / MultiPhosphateSampler.cc	kinematics / FoldTree.hh
rna / phosphate / MultiPhosphateSampler.cc	pose / full_model_info / FullModelInfo.hh
rna / phosphate / MultiPhosphateSampler.cc	pose / Pose.hh
rna / phosphate / MultiPhosphateSampler.cc	conformation / Residue.hh
rna / phosphate / MultiPhosphateSampler.cc	scoring / ScoreFunction.hh
rna / phosphate / MultiPhosphateSampler.cc	id / TorsionID.hh
rna / phosphate / MultiPhosphateSampler.cc	chemical / rna / util.hh
rna / phosphate / MultiPhosphateSampler.hh	pose / Pose.fwd.hh
rna / phosphate / MultiPhosphateSampler.hh	scoring / ScoreFunction.fwd.hh
rna / phosphate / MultiPhosphateSampler.hh	types.hh
rna / o2prime / O2PrimePacker.cc	pack / task / PackerTask.hh
rna / o2prime / O2PrimePacker.cc	pack / rotamer_trials.hh
rna / o2prime / O2PrimePacker.cc	scoring / ScoreFunction.hh
rna / o2prime / O2PrimePacker.cc	pack / task / TaskFactory.hh
rna / o2prime / O2PrimePacker.cc	pack / task / operation / TaskOperations.hh
rna / o2prime / O2PrimePacker.hh	pack / task / PackerTask.fwd.hh
rna / o2prime / O2PrimePacker.hh	pose / Pose.hh
rna / o2prime / O2PrimePacker.hh	scoring / ScoreFunction.fwd.hh
output_util.cc	kinematics / FoldTree.hh
output_util.cc	kinematics / MoveMap.hh
output_util.cc	pose / Pose.hh
output_util.cc	chemical / ResidueType.hh
output_util.hh	kinematics / MoveMap.fwd.hh
output_util.hh	pose / Pose.fwd.hh
output_util.hh	types.hh
rna / phosphate / PhosphateMove.hh	types.hh
rna / phosphate / PhosphateMover.cc	chemical / AtomType.hh
rna / phosphate / PhosphateMover.cc	scoring / Energies.hh
rna / phosphate / PhosphateMover.cc	kinematics / FoldTree.hh
rna / phosphate / PhosphateMover.cc	pose / Pose.hh
rna / phosphate / PhosphateMover.cc	conformation / ResidueFactory.hh
rna / phosphate / PhosphateMover.cc	chemical / ResidueType.hh
rna / phosphate / PhosphateMover.cc	chemical / rna / RNA_Info.hh
rna / phosphate / PhosphateMover.cc	chemical / rna / RNA_SamplerUtil.hh
rna / phosphate / PhosphateMover.cc	scoring / ScoreFunction.hh
rna / phosphate / PhosphateMover.cc	id / TorsionID.hh
rna / phosphate / PhosphateMover.cc	chemical / rna / util.hh
rna / phosphate / PhosphateMover.cc	pose / rna / util.hh
rna / phosphate / PhosphateMover.cc	pose / variant_util.hh
rna / phosphate / PhosphateMover.hh	pose / Pose.fwd.hh
rna / phosphate / PhosphateMover.hh	chemical / rna / RNA_FittedTorsionInfo.hh
rna / phosphate / PhosphateMover.hh	scoring / ScoreFunction.fwd.hh
rna / phosphate / PhosphateMover.hh	types.hh
polar_hydrogens / PolarHydrogenPacker.cc	id / AtomID.hh
polar_hydrogens / PolarHydrogenPacker.cc	scoring / hbonds / HBondDatabase.hh
polar_hydrogens / PolarHydrogenPacker.cc	scoring / hbonds / HBondOptions.hh
polar_hydrogens / PolarHydrogenPacker.cc	scoring / hbonds / hbonds_geom.hh
polar_hydrogens / PolarHydrogenPacker.cc	id / NamedAtomID.hh
polar_hydrogens / PolarHydrogenPacker.cc	pose / PDBInfo.hh
polar_hydrogens / PolarHydrogenPacker.cc	conformation / Residue.hh
polar_hydrogens / PolarHydrogenPacker.cc	conformation / ResidueFactory.hh
polar_hydrogens / PolarHydrogenPacker.cc	chemical / ResidueType.hh
polar_hydrogens / PolarHydrogenPacker.cc	chemical / rna / RNA_Info.hh
polar_hydrogens / PolarHydrogenPacker.cc	kinematics / Stub.hh
polar_hydrogens / PolarHydrogenPacker.cc	scoring / hbonds / types.hh
polar_hydrogens / PolarHydrogenPacker.cc	pose / variant_util.hh
polar_hydrogens / PolarHydrogenPacker.hh	scoring / hbonds / HBEvalTuple.hh
polar_hydrogens / PolarHydrogenPacker.hh	scoring / hbonds / HBondDatabase.fwd.hh
polar_hydrogens / PolarHydrogenPacker.hh	scoring / hbonds / HBondOptions.fwd.hh
polar_hydrogens / PolarHydrogenPacker.hh	kinematics / Stub.fwd.hh
polar_hydrogens / PolarHydrogenPacker.hh	types.hh
precomputed / PrecomputedLibraryMover.cc	conformation / Conformation.hh
precomputed / PrecomputedLibraryMover.cc	kinematics / FoldTree.hh
precomputed / PrecomputedLibraryMover.cc	pose / full_model_info / FullModelInfo.hh
precomputed / PrecomputedLibraryMover.cc	pose / Pose.hh
precomputed / PrecomputedLibraryMover.cc	conformation / Residue.hh
precomputed / PrecomputedLibraryMover.cc	io / silent / SilentFileData.hh
precomputed / PrecomputedLibraryMover.cc	io / silent / SilentFileOptions.hh
precomputed / PrecomputedLibraryMover.cc	io / silent / SilentStruct.hh
precomputed / PrecomputedLibraryMover.cc	pose / full_model_info / util.hh
precomputed / PrecomputedLibraryMover.cc	pose / util.hh
precomputed / PrecomputedLibraryMover.hh	pose / Pose.fwd.hh
precomputed / PrecomputedLibraryMover.hh	io / silent / SilentFileData.fwd.hh
protein / checker / ProteinAtrRepChecker.cc	scoring / Energies.hh
protein / checker / ProteinAtrRepChecker.cc	scoring / methods / EnergyMethodOptions.hh
protein / checker / ProteinAtrRepChecker.cc	scoring / etable / Etable.hh
protein / checker / ProteinAtrRepChecker.cc	scoring / etable / EtableEnergy.hh
protein / checker / ProteinAtrRepChecker.cc	pose / Pose.hh
protein / checker / ProteinAtrRepChecker.cc	scoring / ScoreFunction.hh
protein / checker / ProteinAtrRepChecker.cc	scoring / ScoringManager.hh
protein / checker / ProteinAtrRepChecker.cc	pose / util.hh
protein / checker / ProteinAtrRepChecker.hh	pose / Pose.hh
protein / checker / ProteinAtrRepChecker.hh	scoring / ScoreFunction.fwd.hh
rna / checker / RNA_AtrRepChecker.cc	scoring / Energies.hh
rna / checker / RNA_AtrRepChecker.cc	scoring / methods / EnergyMethodOptions.hh
rna / checker / RNA_AtrRepChecker.cc	scoring / etable / Etable.hh
rna / checker / RNA_AtrRepChecker.cc	scoring / etable / EtableEnergy.hh
rna / checker / RNA_AtrRepChecker.cc	pose / Pose.hh
rna / checker / RNA_AtrRepChecker.cc	scoring / ScoreFunction.hh
rna / checker / RNA_AtrRepChecker.cc	scoring / ScoringManager.hh
rna / checker / RNA_AtrRepChecker.cc	pose / variant_util.hh
rna / checker / RNA_AtrRepChecker.hh	scoring / methods / EnergyMethodOptions.fwd.hh
rna / checker / RNA_AtrRepChecker.hh	pose / Pose.hh
rna / checker / RNA_AtrRepChecker.hh	scoring / ScoreFunction.fwd.hh
rna / checker / RNA_BaseCentroidChecker.cc	kinematics / FoldTree.hh
rna / checker / RNA_BaseCentroidChecker.cc	pose / Pose.hh
rna / checker / RNA_BaseCentroidChecker.cc	conformation / Residue.hh
rna / checker / RNA_BaseCentroidChecker.cc	scoring / rna / RNA_CentroidInfo.hh
rna / checker / RNA_BaseCentroidChecker.cc	kinematics / Stub.hh
rna / checker / RNA_BaseCentroidChecker.cc	id / TorsionID.hh
rna / checker / RNA_BaseCentroidChecker.hh	pose / Pose.fwd.hh
rna / checker / RNA_BaseCentroidChecker.hh	scoring / rna / RNA_CentroidInfo.fwd.hh
rna / checker / RNA_BaseCentroidChecker.hh	kinematics / Stub.hh
rna / checker / RNA_BaseCentroidChecker.hh	types.hh
rna / checker / RNA_BaseCentroidChecker.hh	chemical / rna / util.hh
rna / checker / RNA_ChainClosableGeometryChecker.cc	pose / Pose.hh
rna / checker / RNA_ChainClosableGeometryChecker.cc	conformation / Residue.hh
rna / checker / RNA_ChainClosableGeometryChecker.cc	kinematics / Stub.hh
rna / checker / RNA_ChainClosableGeometryChecker.hh	pose / Pose.fwd.hh
rna / checker / RNA_ChainClosableGeometryChecker.hh	conformation / Residue.fwd.hh
rna / checker / RNA_ChainClosableGeometryChecker.hh	kinematics / Stub.fwd.hh
rna / checker / RNA_ChainClosableGeometryChecker.hh	types.hh
rna / checker / RNA_ChainClosureChecker.cc	scoring / Energies.hh
rna / checker / RNA_ChainClosureChecker.cc	conformation / Residue.hh
rna / checker / RNA_ChainClosureChecker.cc	scoring / ScoreFunction.hh
rna / checker / RNA_ChainClosureChecker.cc	scoring / ScoreType.hh
rna / checker / RNA_ChainClosureChecker.cc	id / TorsionID.hh
rna / checker / RNA_ChainClosureChecker.cc	chemical / VariantType.hh
rna / checker / RNA_ChainClosureChecker.hh	pose / Pose.hh
rna / checker / RNA_ChainClosureChecker.hh	scoring / ScoreFunction.fwd.hh
rna / checker / RNA_VDW_BinChecker.cc	id / AtomID_Map.hh
rna / checker / RNA_VDW_BinChecker.cc	chemical / AtomType.hh
rna / checker / RNA_VDW_BinChecker.cc	chemical / ChemicalManager.hh
rna / checker / RNA_VDW_BinChecker.cc	pose / full_model_info / FullModelInfo.hh
rna / checker / RNA_VDW_BinChecker.cc	import_pose / import_pose.hh
rna / checker / RNA_VDW_BinChecker.cc	kinematics / MoveMap.hh
rna / checker / RNA_VDW_BinChecker.cc	pose / PDBInfo.hh
rna / checker / RNA_VDW_BinChecker.cc	pose / Pose.hh
rna / checker / RNA_VDW_BinChecker.cc	conformation / Residue.hh
rna / checker / RNA_VDW_BinChecker.cc	conformation / ResidueFactory.hh
rna / checker / RNA_VDW_BinChecker.cc	chemical / ResidueTypeSet.hh
rna / checker / RNA_VDW_BinChecker.cc	scoring / rms_util.tmpl.hh
rna / checker / RNA_VDW_BinChecker.cc	types.hh
rna / checker / RNA_VDW_BinChecker.cc	pose / rna / util.hh
rna / checker / RNA_VDW_BinChecker.cc	pose / util.hh
rna / checker / RNA_VDW_BinChecker.cc	chemical / rna / util.hh
rna / checker / RNA_VDW_BinChecker.cc	chemical / util.hh
rna / checker / RNA_VDW_BinChecker.cc	chemical / VariantType.hh
rna / checker / RNA_VDW_BinChecker.cc	pose / rna / VDW_Grid.hh
rna / checker / RNA_VDW_BinChecker.cc	pose / rna / VDW_RepScreenInfo.hh
rna / checker / RNA_VDW_BinChecker.hh	chemical / AA.hh
rna / checker / RNA_VDW_BinChecker.hh	kinematics / FoldTree.fwd.hh
rna / checker / RNA_VDW_BinChecker.hh	pose / Pose.fwd.hh
rna / checker / RNA_VDW_BinChecker.hh	pose / Pose.hh
rna / checker / RNA_VDW_BinChecker.hh	conformation / Residue.hh
rna / checker / RNA_VDW_BinChecker.hh	types.hh
rna / checker / RNA_VDW_BinChecker.hh	pose / rna / VDW_Grid.hh
rna / checker / RNA_VDW_BinChecker.hh	pose / rna / VDW_RepScreenInfo.hh
scoring_util.cc	scoring / methods / EnergyMethodOptions.hh
scoring_util.cc	scoring / etable / EtableOptions.hh
scoring_util.cc	pose / Pose.hh
scoring_util.cc	scoring / ScoreFunction.hh
scoring_util.cc	scoring / ScoreFunctionFactory.hh
scoring_util.hh	pose / Pose.fwd.hh
scoring_util.hh	scoring / ScoreFunction.fwd.hh
packer / SideChainCopier.cc	conformation / Conformation.hh
packer / SideChainCopier.cc	pose / Pose.hh
packer / SideChainCopier.cc	chemical / ResidueType.hh
packer / SideChainCopier.cc	id / TorsionID.hh
packer / SideChainCopier.cc	scoring / constraints / util.hh
packer / SideChainCopier.cc	pose / copydofs / util.hh
options / StepWiseBasicModelerOptions.hh	types.hh
working_parameters / StepWiseBasicWorkingParameters.cc	pose / Pose.hh
working_parameters / StepWiseBasicWorkingParameters.hh	pose / Pose.fwd.hh
working_parameters / StepWiseBasicWorkingParameters.hh	types.hh
align / StepWiseClusterer.cc	pose / extra_pose_info_util.hh
align / StepWiseClusterer.cc	pose / Pose.hh
align / StepWiseClusterer.cc	pose / util.hh
align / StepWiseClusterer.hh	pose / Pose.hh
align / StepWiseClusterer.hh	types.hh
StepWiseConnectionSampler.cc	id / AtomID.hh
StepWiseConnectionSampler.cc	scoring / methods / EnergyMethodOptions.hh
StepWiseConnectionSampler.cc	pose / Pose.hh
StepWiseConnectionSampler.cc	scoring / ScoreFunction.hh
StepWiseConnectionSampler.cc	scoring / ScoreType.hh
StepWiseConnectionSampler.cc	kinematics / Stub.hh
StepWiseConnectionSampler.cc	id / TorsionID.hh
StepWiseConnectionSampler.cc	types.hh
StepWiseConnectionSampler.cc	pose / full_model_info / util.hh
StepWiseConnectionSampler.cc	pose / rna / util.hh
StepWiseConnectionSampler.cc	chemical / rna / util.hh
StepWiseConnectionSampler.cc	pose / variant_util.hh
StepWiseConnectionSampler.hh	pose / Pose.fwd.hh
StepWiseConnectionSampler.hh	conformation / Residue.fwd.hh
StepWiseConnectionSampler.hh	scoring / ScoreFunction.hh
StepWiseConnectionSampler.hh	io / silent / SilentFileData.fwd.hh
StepWiseConnectionSampler.hh	kinematics / Stub.hh
align / StepWiseLegacyClusterer.cc	id / AtomID.hh
align / StepWiseLegacyClusterer.cc	chemical / ChemicalManager.hh
align / StepWiseLegacyClusterer.cc	pose / extra_pose_info_util.hh
align / StepWiseLegacyClusterer.cc	pose / Pose.hh
align / StepWiseLegacyClusterer.cc	import_pose / pose_stream / PoseInputStream.fwd.hh
align / StepWiseLegacyClusterer.cc	import_pose / pose_stream / PoseInputStream.hh
align / StepWiseLegacyClusterer.cc	chemical / ResidueTypeSet.hh
align / StepWiseLegacyClusterer.cc	scoring / rms_util.hh
align / StepWiseLegacyClusterer.cc	io / silent / SilentFileData.hh
align / StepWiseLegacyClusterer.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
align / StepWiseLegacyClusterer.cc	io / silent / SilentStruct.hh
align / StepWiseLegacyClusterer.cc	pose / subpose_manipulation_util.hh
align / StepWiseLegacyClusterer.cc	types.hh
align / StepWiseLegacyClusterer.cc	pose / util.hh
align / StepWiseLegacyClusterer.hh	pose / Pose.hh
align / StepWiseLegacyClusterer.hh	chemical / ResidueTypeSet.fwd.hh
align / StepWiseLegacyClusterer.hh	scoring / ScoreFunction.fwd.hh
align / StepWiseLegacyClusterer.hh	io / silent / SilentFileData.fwd.hh
align / StepWiseLegacyClusterer.hh	import_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
align / StepWiseLegacyClusterer.hh	io / silent / SilentStruct.fwd.hh
align / StepWiseLegacyClusterer.hh	types.hh
align / StepWiseLegacyClustererSilentBased.cc	chemical / ChemicalManager.hh
align / StepWiseLegacyClustererSilentBased.cc	pose / extra_pose_info_util.hh
align / StepWiseLegacyClustererSilentBased.cc	pose / Pose.hh
align / StepWiseLegacyClustererSilentBased.cc	import_pose / pose_stream / PoseInputStream.hh
align / StepWiseLegacyClustererSilentBased.cc	chemical / ResidueTypeSet.hh
align / StepWiseLegacyClustererSilentBased.cc	scoring / rms_util.hh
align / StepWiseLegacyClustererSilentBased.cc	io / silent / SilentFileData.hh
align / StepWiseLegacyClustererSilentBased.cc	io / silent / SilentFileOptions.hh
align / StepWiseLegacyClustererSilentBased.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
align / StepWiseLegacyClustererSilentBased.cc	io / silent / SilentStruct.hh
align / StepWiseLegacyClustererSilentBased.cc	pose / subpose_manipulation_util.hh
align / StepWiseLegacyClustererSilentBased.cc	types.hh
align / StepWiseLegacyClustererSilentBased.cc	pose / util.hh
align / StepWiseLegacyClustererSilentBased.hh	id / AtomID.hh
align / StepWiseLegacyClustererSilentBased.hh	pose / Pose.fwd.hh
align / StepWiseLegacyClustererSilentBased.hh	chemical / ResidueTypeSet.fwd.hh
align / StepWiseLegacyClustererSilentBased.hh	scoring / ScoreFunction.fwd.hh
align / StepWiseLegacyClustererSilentBased.hh	io / silent / SilentFileData.fwd.hh
align / StepWiseLegacyClustererSilentBased.hh	import_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
align / StepWiseLegacyClustererSilentBased.hh	io / silent / SilentStruct.fwd.hh
align / StepWiseLegacyClustererSilentBased.hh	types.hh
packer / StepWiseMasterPacker.cc	scoring / Energies.hh
packer / StepWiseMasterPacker.cc	scoring / methods / EnergyMethodOptions.hh
packer / StepWiseMasterPacker.cc	scoring / ScoreFunction.hh
packer / StepWiseMasterPacker.hh	pose / Pose.fwd.hh
packer / StepWiseMasterPacker.hh	scoring / ScoreFunction.hh
packer / StepWiseMasterPacker.hh	types.hh
StepWiseMinimizer.cc	id / AtomID.hh
StepWiseMinimizer.cc	optimization / AtomTreeMinimizer.hh
StepWiseMinimizer.cc	optimization / CartesianMinimizer.hh
StepWiseMinimizer.cc	scoring / constraints / ConstraintSet.hh
StepWiseMinimizer.cc	scoring / Energies.hh
StepWiseMinimizer.cc	scoring / EnergyGraph.hh
StepWiseMinimizer.cc	scoring / EnergyMap.hh
StepWiseMinimizer.cc	pose / extra_pose_info_util.hh
StepWiseMinimizer.cc	pose / full_model_info / FullModelInfo.hh
StepWiseMinimizer.cc	optimization / MinimizerOptions.hh
StepWiseMinimizer.cc	kinematics / MoveMap.hh
StepWiseMinimizer.cc	pose / Pose.hh
StepWiseMinimizer.cc	scoring / ScoreFunction.hh
StepWiseMinimizer.cc	pose / rna / util.hh
StepWiseMinimizer.cc	pose / util.hh
StepWiseMinimizer.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
StepWiseMinimizer.hh	optimization / AtomTreeMinimizer.fwd.hh
StepWiseMinimizer.hh	optimization / CartesianMinimizer.fwd.hh
StepWiseMinimizer.hh	optimization / MinimizerOptions.fwd.hh
StepWiseMinimizer.hh	kinematics / MoveMap.fwd.hh
StepWiseMinimizer.hh	pose / Pose.hh
StepWiseMinimizer.hh	scoring / ScoreFunction.hh
StepWiseModeler.cc	scoring / constraints / ConstraintIO.hh
StepWiseModeler.cc	scoring / constraints / ConstraintSet.hh
StepWiseModeler.cc	pose / full_model_info / FullModelInfo.hh
StepWiseModeler.cc	pose / Pose.hh
StepWiseModeler.cc	scoring / ScoreFunction.hh
StepWiseModeler.cc	pose / full_model_info / util.hh
StepWiseModeler.cc	pose / variant_util.hh
StepWiseModeler.hh	scoring / constraints / ConstraintSet.fwd.hh
StepWiseModeler.hh	kinematics / MoveMap.fwd.hh
StepWiseModeler.hh	pose / Pose.fwd.hh
StepWiseModeler.hh	scoring / ScoreFunction.fwd.hh
packer / StepWisePacker.cc	scoring / Energies.hh
packer / StepWisePacker.cc	scoring / EnergyGraph.hh
packer / StepWisePacker.cc	pack / pack_rotamers.hh
packer / StepWisePacker.cc	pack / task / PackerTask.hh
packer / StepWisePacker.cc	pose / Pose.hh
packer / StepWisePacker.cc	conformation / Residue.hh
packer / StepWisePacker.cc	pack / rotamer_trials.hh
packer / StepWisePacker.cc	scoring / ScoreFunction.hh
packer / StepWisePacker.cc	scoring / ScoreFunctionFactory.hh
packer / StepWisePacker.cc	io / silent / SilentFileData.fwd.hh
packer / StepWisePacker.cc	io / silent / SilentFileData.hh
packer / StepWisePacker.cc	pack / task / TaskFactory.hh
packer / StepWisePacker.cc	pack / task / operation / TaskOperations.hh
packer / StepWisePacker.cc	types.hh
packer / StepWisePacker.cc	pose / util.hh
packer / StepWisePacker.hh	pack / task / PackerTask.fwd.hh
packer / StepWisePacker.hh	pose / Pose.fwd.hh
packer / StepWisePacker.hh	scoring / ScoreFunction.fwd.hh
packer / StepWisePacker.hh	types.hh
align / StepWisePoseAligner.cc	kinematics / tree / Atom.hh
align / StepWisePoseAligner.cc	kinematics / AtomTree.hh
align / StepWisePoseAligner.cc	scoring / constraints / ConstraintSet.hh
align / StepWisePoseAligner.cc	scoring / constraints / CoordinateConstraint.hh
align / StepWisePoseAligner.cc	scoring / func / FlatHarmonicFunc.hh
align / StepWisePoseAligner.cc	kinematics / FoldTree.hh
align / StepWisePoseAligner.cc	pose / full_model_info / FullModelInfo.hh
align / StepWisePoseAligner.cc	pose / full_model_info / FullModelParameters.hh
align / StepWisePoseAligner.cc	pose / Pose.hh
align / StepWisePoseAligner.cc	conformation / Residue.hh
align / StepWisePoseAligner.cc	chemical / ResidueType.hh
align / StepWisePoseAligner.cc	scoring / rms_util.hh
align / StepWisePoseAligner.cc	pose / rna / util.hh
align / StepWisePoseAligner.cc	pose / full_model_info / util.hh
align / StepWisePoseAligner.cc	conformation / util.hh
align / StepWisePoseAligner.cc	chemical / rna / util.hh
align / StepWisePoseAligner.cc	chemical / VariantType.hh
align / StepWisePoseAligner.hh	id / AtomID.hh
align / StepWisePoseAligner.hh	pose / Pose.fwd.hh
align / StepWisePoseAligner.hh	types.hh
protein / StepWiseProteinBackboneSampler.cc	pose / annotated_sequence.hh
protein / StepWiseProteinBackboneSampler.cc	id / AtomID.hh
protein / StepWiseProteinBackboneSampler.cc	chemical / ChemicalManager.hh
protein / StepWiseProteinBackboneSampler.cc	scoring / dssp / Dssp.hh
protein / StepWiseProteinBackboneSampler.cc	scoring / Energies.hh
protein / StepWiseProteinBackboneSampler.cc	kinematics / Jump.hh
protein / StepWiseProteinBackboneSampler.cc	pose / Pose.hh
protein / StepWiseProteinBackboneSampler.cc	io / silent / ProteinSilentStruct.hh
protein / StepWiseProteinBackboneSampler.cc	scoring / Ramachandran.hh
protein / StepWiseProteinBackboneSampler.cc	scoring / RamaPrePro.hh
protein / StepWiseProteinBackboneSampler.cc	scoring / rms_util.tmpl.hh
protein / StepWiseProteinBackboneSampler.cc	scoring / ScoreFunction.hh
protein / StepWiseProteinBackboneSampler.cc	scoring / ScoreFunctionFactory.hh
protein / StepWiseProteinBackboneSampler.cc	scoring / ScoreType.hh
protein / StepWiseProteinBackboneSampler.cc	scoring / ScoringManager.hh
protein / StepWiseProteinBackboneSampler.cc	io / silent / SilentFileData.fwd.hh
protein / StepWiseProteinBackboneSampler.cc	io / silent / SilentFileData.hh
protein / StepWiseProteinBackboneSampler.cc	util / SwitchResidueTypeSet.hh
protein / StepWiseProteinBackboneSampler.cc	id / TorsionID.hh
protein / StepWiseProteinBackboneSampler.cc	types.hh
protein / StepWiseProteinBackboneSampler.cc	pose / rna / util.hh
protein / StepWiseProteinBackboneSampler.cc	pose / full_model_info / util.hh
protein / StepWiseProteinBackboneSampler.cc	pose / variant_util.hh
protein / StepWiseProteinBackboneSampler.hh	kinematics / FoldTree.fwd.hh
protein / StepWiseProteinBackboneSampler.hh	pose / Pose.fwd.hh
protein / StepWiseProteinBackboneSampler.hh	scoring / Ramachandran.fwd.hh
protein / StepWiseProteinBackboneSampler.hh	scoring / RamaPrePro.fwd.hh
protein / StepWiseProteinBackboneSampler.hh	scoring / ScoreFunction.fwd.hh
protein / StepWiseProteinBackboneSampler.hh	id / TorsionID.fwd.hh
protein / StepWiseProteinBackboneSampler.hh	types.hh
protein / loop_close / StepWiseProteinCCD_Closer.cc	id / AtomID.hh
protein / loop_close / StepWiseProteinCCD_Closer.cc	kinematics / Jump.hh
protein / loop_close / StepWiseProteinCCD_Closer.cc	pose / Pose.hh
protein / loop_close / StepWiseProteinCCD_Closer.cc	conformation / Residue.hh
protein / loop_close / StepWiseProteinCCD_Closer.cc	chemical / ResidueType.hh
protein / loop_close / StepWiseProteinCCD_Closer.cc	id / TorsionID.hh
protein / loop_close / StepWiseProteinCCD_Closer.cc	types.hh
protein / loop_close / StepWiseProteinCCD_Closer.cc	chemical / VariantType.hh
protein / loop_close / StepWiseProteinCCD_Closer.hh	kinematics / MoveMap.hh
protein / loop_close / StepWiseProteinCCD_Closer.hh	pose / Pose.fwd.hh
protein / loop_close / StepWiseProteinCCD_Closer.hh	id / TorsionID.hh
protein / loop_close / StepWiseProteinCCD_MultiPoseCloser.cc	pose / Pose.hh
protein / loop_close / StepWiseProteinCCD_MultiPoseCloser.hh	pose / Pose.fwd.hh
protein / loop_close / StepWiseProteinCCD_MultiPoseCloser.hh	id / TorsionID.fwd.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.cc	kinematics / FoldTree.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.cc	kinematics / Jump.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.cc	pose / Pose.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.cc	scoring / Ramachandran.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.cc	conformation / Residue.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.cc	chemical / ResidueConnection.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.cc	io / silent / SilentFileData.fwd.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.cc	id / TorsionID.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.cc	types.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.cc	pose / rna / util.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.cc	chemical / VariantType.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.hh	pose / Pose.fwd.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.hh	scoring / Ramachandran.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.hh	id / TorsionID.fwd.hh
options / StepWiseProteinModelerOptions.hh	types.hh
rna / StepWiseRNA_Classes.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_Classes.hh	scoring / ScoreFunction.fwd.hh
rna / StepWiseRNA_Classes.hh	io / silent / SilentFileData.fwd.hh
rna / StepWiseRNA_Classes.hh	id / TorsionID.hh
rna / StepWiseRNA_Classes.hh	types.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	scoring / constraints / AtomPairConstraint.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	chemical / AtomType.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	chemical / ChemicalManager.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	scoring / constraints / ConstraintSet.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	pose / extra_pose_info_util.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	kinematics / FoldTree.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	import_pose / import_pose.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	pose / Pose.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	import_pose / pose_stream / PoseInputStream.fwd.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	import_pose / pose_stream / PoseInputStream.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	conformation / Residue.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	chemical / ResidueTypeSet.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	scoring / rms_util.tmpl.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	import_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	id / TorsionID.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	types.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	pose / util.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	chemical / util.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	pose / util.tmpl.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cc	chemical / VariantType.hh
rna / StepWiseRNA_CombineLongLoopFilterer.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_CombineLongLoopFilterer.hh	chemical / ResidueTypeSet.fwd.hh
rna / StepWiseRNA_CombineLongLoopFilterer.hh	import_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
rna / StepWiseRNA_CombineLongLoopFilterer.hh	types.hh
options / StepWiseRNA_ModelerOptions.hh	types.hh
rna / StepWiseRNA_OutputData.cc	scoring / constraints / AngleConstraint.hh
rna / StepWiseRNA_OutputData.cc	scoring / constraints / AtomPairConstraint.hh
rna / StepWiseRNA_OutputData.cc	optimization / AtomTreeMinimizer.hh
rna / StepWiseRNA_OutputData.cc	chemical / AtomType.hh
rna / StepWiseRNA_OutputData.cc	io / silent / BinarySilentStruct.hh
rna / StepWiseRNA_OutputData.cc	chemical / ChemicalManager.hh
rna / StepWiseRNA_OutputData.cc	scoring / constraints / ConstraintSet.fwd.hh
rna / StepWiseRNA_OutputData.cc	scoring / constraints / ConstraintSet.hh
rna / StepWiseRNA_OutputData.cc	kinematics / MoveMap.hh
rna / StepWiseRNA_OutputData.cc	pack / pack_rotamers.hh
rna / StepWiseRNA_OutputData.cc	pack / task / PackerTask.hh
rna / StepWiseRNA_OutputData.cc	pose / Pose.hh
rna / StepWiseRNA_OutputData.cc	conformation / Residue.hh
rna / StepWiseRNA_OutputData.cc	chemical / ResidueTypeSet.hh
rna / StepWiseRNA_OutputData.cc	scoring / rms_util.tmpl.hh
rna / StepWiseRNA_OutputData.cc	pose / rna / RNA_BaseDoubletClasses.hh
rna / StepWiseRNA_OutputData.cc	pose / rna / RNA_BasePairClassifier.hh
rna / StepWiseRNA_OutputData.cc	chemical / rna / RNA_FittedTorsionInfo.hh
rna / StepWiseRNA_OutputData.cc	pack / rotamer_trials.hh
rna / StepWiseRNA_OutputData.cc	scoring / ScoreFunction.hh
rna / StepWiseRNA_OutputData.cc	scoring / ScoreType.hh
rna / StepWiseRNA_OutputData.cc	io / silent / SilentFileData.hh
rna / StepWiseRNA_OutputData.cc	io / silent / SilentFileOptions.hh
rna / StepWiseRNA_OutputData.cc	pack / task / TaskFactory.hh
rna / StepWiseRNA_OutputData.cc	types.hh
rna / StepWiseRNA_OutputData.cc	scoring / constraints / util.hh
rna / StepWiseRNA_OutputData.cc	chemical / util.hh
rna / StepWiseRNA_OutputData.cc	chemical / VariantType.hh
rna / StepWiseRNA_OutputData.hh	chemical / AA.hh
rna / StepWiseRNA_OutputData.hh	io / silent / BinarySilentStruct.hh
rna / StepWiseRNA_OutputData.hh	kinematics / FoldTree.fwd.hh
rna / StepWiseRNA_OutputData.hh	optimization / MinimizerOptions.hh
rna / StepWiseRNA_OutputData.hh	kinematics / MoveMap.hh
rna / StepWiseRNA_OutputData.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_OutputData.hh	conformation / Residue.hh
rna / StepWiseRNA_OutputData.hh	io / silent / RNA_SilentStruct.hh
rna / StepWiseRNA_OutputData.hh	scoring / ScoreFunction.fwd.hh
rna / StepWiseRNA_OutputData.hh	io / silent / SilentFileData.hh
rna / StepWiseRNA_OutputData.hh	types.hh
rna / StepWiseRNA_ResidueInfo.cc	chemical / AtomType.hh
rna / StepWiseRNA_ResidueInfo.cc	conformation / Conformation.hh
rna / StepWiseRNA_ResidueInfo.cc	pose / Pose.fwd.hh
rna / StepWiseRNA_ResidueInfo.cc	pose / Pose.hh
rna / StepWiseRNA_ResidueInfo.cc	conformation / Residue.hh
rna / StepWiseRNA_ResidueInfo.hh	pose / Pose.fwd.hh
rna / StepWiseRNA_ResidueInfo.hh	types.hh
working_parameters / StepWiseWorkingParameters.cc	kinematics / FoldTree.hh
working_parameters / StepWiseWorkingParameters.cc	pose / rna / util.hh
working_parameters / StepWiseWorkingParameters.hh	kinematics / FoldTree.hh
working_parameters / StepWiseWorkingParameters.hh	pose / Pose.fwd.hh
rna / sugar / SugarInstantiateMover.cc	pose / Pose.hh
rna / sugar / SugarInstantiateMover.cc	conformation / Residue.hh
rna / sugar / SugarInstantiateMover.cc	chemical / types.hh
rna / sugar / SugarInstantiateMover.cc	pose / variant_util.hh
rna / sugar / SugarModeling.cc	pose / Pose.hh
rna / sugar / SugarModeling.cc	types.hh
rna / sugar / SugarModeling.cc	chemical / rna / util.hh
rna / sugar / SugarModeling.cc	pose / util.hh
rna / sugar / SugarModeling.hh	pose / Pose.fwd.hh
rna / sugar / SugarModeling.hh	types.hh
rna / sugar / SugarModeling.hh	chemical / rna / util.hh
rna / sugar / SugarVirtualizeMover.cc	pose / Pose.hh
rna / sugar / SugarVirtualizeMover.cc	conformation / Residue.hh
rna / sugar / SugarVirtualizeMover.cc	chemical / types.hh
rna / sugar / SugarVirtualizeMover.cc	pose / variant_util.hh
rna / util.cc	scoring / constraints / AngleConstraint.hh
rna / rigid_body / util.cc	scoring / constraints / AngleConstraint.hh
rna / util.cc	id / AtomID.hh
protein / util.cc	id / AtomID.hh
util.cc	id / AtomID.hh
rna / util.cc	id / AtomID_Map.hh
protein / util.cc	id / AtomID_Map.hh
util.cc	id / AtomID_Map.hh
working_parameters / util.cc	pose / toolbox / AtomLevelDomainMap.hh
rna / util.cc	pose / toolbox / AtomLevelDomainMap.hh
rna / util.cc	scoring / constraints / AtomPairConstraint.hh
rna / rigid_body / util.cc	scoring / constraints / AtomPairConstraint.hh
rna / sugar / util.cc	optimization / AtomTreeMinimizer.hh
rna / util.cc	optimization / AtomTreeMinimizer.hh
rna / util.cc	chemical / AtomType.hh
rna / rigid_body / util.cc	chemical / AtomType.hh
util.cc	pose / datacache / CacheableDataType.hh
util.cc	scoring / methods / chainbreak_util.hh
rna / util.cc	chemical / ChemicalManager.hh
rna / rigid_body / util.cc	chemical / ChemicalManager.hh
rna / util.cc	scoring / func / CircularSplineFunc.hh
movemap / util.cc	conformation / Conformation.hh
util.cc	conformation / Conformation.hh
protein / util.cc	fragment / ConstantLengthFragSet.hh
rna / rigid_body / util.cc	scoring / constraints / ConstraintSet.fwd.hh
rna / util.cc	scoring / constraints / ConstraintSet.hh
rna / rigid_body / util.cc	scoring / constraints / ConstraintSet.hh
util.cc	scoring / constraints / ConstraintSet.hh
rna / util.cc	scoring / constraints / DihedralConstraint.hh
util.cc	kinematics / Edge.hh
packer / util.cc	scoring / Energies.hh
util.cc	scoring / Energies.hh
packer / util.cc	scoring / EnergyGraph.hh
rna / phosphate / util.cc	scoring / methods / EnergyMethodOptions.hh
rna / sugar / util.cc	pose / extra_pose_info_util.hh
util.cc	pose / extra_pose_info_util.hh
rna / util.cc	scoring / func / FadeFunc.hh
working_parameters / util.cc	kinematics / FoldTree.hh
protein / util.cc	fragment / FragData.hh
protein / util.cc	fragment / FragSet.hh
protein / util.cc	fragment / Frame.hh
protein / util.cc	fragment / FrameList.hh
working_parameters / util.cc	pose / full_model_info / FullModelInfo.hh
rna / util.cc	pose / full_model_info / FullModelInfo.hh
protein / util.cc	pose / full_model_info / FullModelInfo.hh
movemap / util.cc	pose / full_model_info / FullModelInfo.hh
util.cc	pose / full_model_info / FullModelInfo.hh
align / util.cc	pose / full_model_info / FullModelInfo.hh
working_parameters / util.cc	pose / full_model_info / FullModelParameters.hh
rna / util.cc	scoring / func / HarmonicFunc.hh
util.cc	scoring / func / HarmonicFunc.hh
rna / util.cc	import_pose / import_pose.hh
util.cc	import_pose / import_pose.hh
util.cc	scoring / loop_graph / LoopGraph.hh
rna / sugar / util.cc	optimization / MinimizerOptions.hh
rna / rigid_body / util.cc	optimization / MinimizerOptions.hh
working_parameters / util.cc	kinematics / MoveMap.hh
rna / sugar / util.cc	kinematics / MoveMap.hh
rna / util.cc	kinematics / MoveMap.hh
movemap / util.cc	kinematics / MoveMap.hh
util.cc	kinematics / MoveMap.hh
protein / util.cc	id / NamedAtomID.hh
rna / phosphate / util.cc	id / NamedAtomID.hh
movemap / util.cc	id / NamedAtomID.hh
rna / util.cc	pack / pack_rotamers.hh
rna / util.cc	pack / task / PackerTask.hh
rna / sugar / util.cc	pose / PDBInfo.hh
util.cc	pose / PDBInfo.hh
working_parameters / util.cc	pose / Pose.hh
rna / sugar / util.cc	pose / Pose.hh
rna / util.cc	pose / Pose.hh
rna / rigid_body / util.cc	pose / Pose.hh
protein / util.cc	pose / Pose.hh
polar_hydrogens / util.cc	pose / Pose.hh
rna / phosphate / util.cc	pose / Pose.hh
packer / util.cc	pose / Pose.hh
movemap / util.cc	pose / Pose.hh
util.cc	pose / Pose.hh
protein / loop_close / util.cc	pose / Pose.hh
align / util.cc	pose / Pose.hh
rna / util.cc	conformation / Residue.hh
rna / rigid_body / util.cc	conformation / Residue.hh
packer / util.cc	conformation / Residue.hh
movemap / util.cc	conformation / Residue.hh
util.cc	conformation / Residue.hh
rna / util.cc	conformation / ResidueFactory.hh
rna / rigid_body / util.cc	conformation / ResidueFactory.hh
rna / phosphate / util.cc	conformation / ResidueFactory.hh
rna / util.cc	chemical / ResidueProperties.hh
rna / util.cc	chemical / ResidueType.hh
polar_hydrogens / util.cc	chemical / ResidueType.hh
packer / util.cc	chemical / ResidueType.hh
movemap / util.cc	chemical / ResidueType.hh
rna / util.cc	chemical / ResidueTypeSet.hh
rna / rigid_body / util.cc	chemical / ResidueTypeSet.hh
rna / phosphate / util.cc	chemical / ResidueTypeSet.hh
util.cc	chemical / ResidueTypeSet.hh
protein / util.cc	scoring / rms_util.hh
align / util.cc	scoring / rms_util.hh
rna / util.cc	scoring / rms_util.tmpl.hh
rna / rigid_body / util.cc	scoring / rms_util.tmpl.hh
rna / util.cc	pose / rna / RNA_BaseDoubletClasses.hh
rna / util.cc	pose / rna / RNA_BasePairClassifier.hh
util.cc	scoring / rna / RNA_CentroidInfo.hh
rna / rigid_body / util.cc	chemical / rna / RNA_FittedTorsionInfo.hh
packer / util.cc	chemical / rna / RNA_Info.hh
util.cc	scoring / rna / RNA_ScoringInfo.hh
util.cc	pose / rna / secstruct_legacy / RNA_SecStructLegacyInfo.hh
rna / rigid_body / util.cc	scoring / rna / RNA_TorsionPotential.hh
rna / util.cc	pack / rotamer_trials.hh
rna / sugar / util.cc	scoring / ScoreFunction.hh
rna / util.cc	scoring / ScoreFunction.hh
rna / rigid_body / util.cc	scoring / ScoreFunction.hh
rna / phosphate / util.cc	scoring / ScoreFunction.hh
packer / util.cc	scoring / ScoreFunction.hh
util.cc	scoring / ScoreFunction.hh
rna / sugar / util.cc	scoring / ScoreFunctionFactory.hh
util.cc	scoring / ScoreFunctionFactory.hh
rna / sugar / util.cc	scoring / ScoreType.hh
rna / util.cc	scoring / ScoreType.hh
rna / util.cc	io / silent / SilentFileData.hh
working_parameters / util.cc	pose / subpose_manipulation_util.hh
rna / util.cc	pack / task / TaskFactory.hh
rna / sugar / util.cc	id / TorsionID.hh
rna / util.cc	id / TorsionID.hh
rna / rigid_body / util.cc	id / TorsionID.hh
rna / phosphate / util.cc	id / TorsionID.hh
protein / loop_close / util.cc	id / TorsionID.hh
rna / util.cc	types.hh
rna / rigid_body / util.cc	types.hh
protein / util.cc	types.hh
util.cc	types.hh
working_parameters / util.cc	pose / util.hh
working_parameters / util.cc	pose / full_model_info / util.hh
rna / sugar / util.cc	pose / copydofs / util.hh
rna / util.cc	scoring / constraints / util.hh
rna / util.cc	chemical / rna / util.hh
rna / util.cc	pose / rna / util.hh
rna / util.cc	pose / full_model_info / util.hh
rna / util.cc	chemical / util.hh
rna / rigid_body / util.cc	scoring / constraints / util.hh
rna / rigid_body / util.cc	chemical / util.hh
rna / rigid_body / util.cc	chemical / rna / util.hh
protein / util.cc	pose / util.hh
protein / util.cc	pose / full_model_info / util.hh
rna / phosphate / util.cc	scoring / constraints / util.hh
rna / phosphate / util.cc	chemical / rna / util.hh
packer / util.cc	pose / util.hh
movemap / util.cc	pose / full_model_info / util.hh
util.cc	pose / full_model_info / util.hh
util.cc	pose / copydofs / util.hh
util.cc	chemical / rna / util.hh
align / util.cc	pose / util.hh
rna / util.cc	pose / util.tmpl.hh
util.cc	pose / util.tmpl.hh
rna / sugar / util.cc	pose / variant_util.hh
rna / util.cc	pose / variant_util.hh
rna / phosphate / util.cc	pose / variant_util.hh
util.cc	pose / variant_util.hh
working_parameters / util.cc	chemical / VariantType.hh
rna / rigid_body / util.cc	chemical / VariantType.hh
rna / phosphate / util.cc	chemical / VariantType.hh
movemap / util.cc	chemical / VariantType.hh
util.cc	chemical / VariantType.hh
rna / util.hh	chemical / AA.hh
protein / util.hh	id / AtomID.fwd.hh
util.hh	id / AtomID.fwd.hh
align / util.hh	id / AtomID.hh
rna / util.hh	id / AtomID_Map.fwd.hh
protein / util.hh	id / AtomID_Map.fwd.hh
util.hh	id / AtomID_Map.fwd.hh
align / util.hh	id / AtomID_Map.hh
working_parameters / util.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
movemap / util.hh	pose / toolbox / AtomLevelDomainMap.hh
rna / util.hh	io / silent / BinarySilentStruct.hh
util.hh	kinematics / Edge.fwd.hh
rna / phosphate / util.hh	scoring / methods / EnergyMethodOptions.fwd.hh
rna / util.hh	kinematics / FoldTree.fwd.hh
util.hh	kinematics / FoldTree.fwd.hh
util.hh	pose / full_model_info / FullModelInfo.fwd.hh
rna / util.hh	optimization / MinimizerOptions.hh
working_parameters / util.hh	kinematics / MoveMap.fwd.hh
rna / util.hh	kinematics / MoveMap.fwd.hh
movemap / util.hh	kinematics / MoveMap.fwd.hh
util.hh	kinematics / MoveMap.fwd.hh
rna / util.hh	pack / task / PackerTask.fwd.hh
working_parameters / util.hh	pose / Pose.fwd.hh
rna / sugar / util.hh	pose / Pose.fwd.hh
rna / util.hh	pose / Pose.fwd.hh
rna / rigid_body / util.hh	pose / Pose.fwd.hh
protein / util.hh	pose / Pose.fwd.hh
polar_hydrogens / util.hh	pose / Pose.fwd.hh
rna / phosphate / util.hh	pose / Pose.fwd.hh
packer / util.hh	pose / Pose.fwd.hh
movemap / util.hh	pose / Pose.fwd.hh
util.hh	pose / Pose.fwd.hh
protein / loop_close / util.hh	pose / Pose.fwd.hh
align / util.hh	pose / Pose.fwd.hh
rna / rigid_body / util.hh	conformation / Residue.fwd.hh
rna / util.hh	conformation / Residue.hh
polar_hydrogens / util.hh	chemical / ResidueType.fwd.hh
rna / util.hh	io / silent / RNA_SilentStruct.hh
util.hh	io / silent / RNA_SilentStruct.hh
rna / sugar / util.hh	scoring / ScoreFunction.fwd.hh
rna / util.hh	scoring / ScoreFunction.fwd.hh
rna / phosphate / util.hh	scoring / ScoreFunction.fwd.hh
packer / util.hh	scoring / ScoreFunction.fwd.hh
util.hh	scoring / ScoreFunction.fwd.hh
rna / util.hh	io / silent / SilentFileData.hh
protein / util.hh	io / silent / SilentFileData.hh
working_parameters / util.hh	types.hh
rna / sugar / util.hh	types.hh
rna / util.hh	types.hh
rna / rigid_body / util.hh	types.hh
protein / util.hh	types.hh
polar_hydrogens / util.hh	types.hh
rna / phosphate / util.hh	types.hh
packer / util.hh	types.hh
movemap / util.hh	types.hh
util.hh	types.hh
align / util.hh	types.hh
util.hh	chemical / VariantType.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.cc	pose / extra_pose_info_util.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.cc	pose / Pose.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.cc	scoring / ScoreFunction.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.cc	scoring / ScoreType.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.cc	chemical / rna / util.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.cc	pose / rna / util.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.cc	pose / variant_util.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.cc	chemical / VariantType.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.hh	pose / Pose.fwd.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.hh	scoring / ScoreFunction.fwd.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.hh	types.hh
rna / sugar / VirtualSugarSampler.cc	optimization / AtomTreeMinimizer.hh
rna / sugar / VirtualSugarSampler.cc	chemical / AtomType.hh
rna / sugar / VirtualSugarSampler.cc	chemical / ChemicalManager.hh
rna / sugar / VirtualSugarSampler.cc	scoring / constraints / ConstraintSet.hh
rna / sugar / VirtualSugarSampler.cc	scoring / Energies.hh
rna / sugar / VirtualSugarSampler.cc	scoring / EnergyMap.hh
rna / sugar / VirtualSugarSampler.cc	scoring / methods / EnergyMethodOptions.hh
rna / sugar / VirtualSugarSampler.cc	pose / extra_pose_info_util.hh
rna / sugar / VirtualSugarSampler.cc	optimization / MinimizerOptions.hh
rna / sugar / VirtualSugarSampler.cc	pose / Pose.hh
rna / sugar / VirtualSugarSampler.cc	conformation / Residue.hh
rna / sugar / VirtualSugarSampler.cc	chemical / ResidueTypeSet.hh
rna / sugar / VirtualSugarSampler.cc	scoring / rna / RNA_TorsionPotential.hh
rna / sugar / VirtualSugarSampler.cc	scoring / ScoreFunction.hh
rna / sugar / VirtualSugarSampler.cc	scoring / ScoreFunctionFactory.hh
rna / sugar / VirtualSugarSampler.cc	types.hh
rna / sugar / VirtualSugarSampler.cc	scoring / constraints / util.hh
rna / sugar / VirtualSugarSampler.cc	pose / full_model_info / util.hh
rna / sugar / VirtualSugarSampler.cc	pose / rna / util.hh
rna / sugar / VirtualSugarSampler.cc	chemical / rna / util.hh
rna / sugar / VirtualSugarSampler.cc	chemical / util.hh
rna / sugar / VirtualSugarSampler.cc	pose / variant_util.hh
rna / sugar / VirtualSugarSampler.cc	chemical / VariantType.hh
rna / sugar / VirtualSugarSampler.hh	scoring / constraints / ConstraintSet.fwd.hh
rna / sugar / VirtualSugarSampler.hh	scoring / constraints / ConstraintSet.hh
rna / sugar / VirtualSugarSampler.hh	kinematics / FoldTree.hh
rna / sugar / VirtualSugarSampler.hh	pose / Pose.fwd.hh
rna / sugar / VirtualSugarSampler.hh	scoring / ScoreFunction.fwd.hh
rna / sugar / VirtualSugarSampler.hh	types.hh
rna / sugar / VirtualSugarSamplerFromStringList.cc	conformation / Conformation.hh
rna / sugar / VirtualSugarSamplerFromStringList.cc	pose / extra_pose_info_util.hh
rna / sugar / VirtualSugarSamplerFromStringList.cc	pose / full_model_info / FullModelInfo.hh
rna / sugar / VirtualSugarSamplerFromStringList.cc	pose / Pose.hh
rna / sugar / VirtualSugarSamplerFromStringList.cc	scoring / ScoreFunction.hh
rna / sugar / VirtualSugarSamplerFromStringList.cc	pose / rna / util.hh
rna / sugar / VirtualSugarSamplerFromStringList.cc	pose / variant_util.hh
rna / sugar / VirtualSugarSamplerFromStringList.hh	pose / Pose.fwd.hh
rna / sugar / VirtualSugarSamplerFromStringList.hh	scoring / ScoreFunction.fwd.hh