toolbox → core Relation

File in src/protocols/toolbox	Includes file in src/core
rotamer_set_operations / AddGood2BPairEnergyRotamers.cc	scoring / methods / ContextDependentLRTwoBodyEnergy.hh
rotamer_set_operations / AddGood2BPairEnergyRotamers.cc	scoring / methods / ContextIndependentLRTwoBodyEnergy.hh
rotamer_set_operations / AddGood2BPairEnergyRotamers.cc	scoring / Energies.hh
rotamer_set_operations / AddGood2BPairEnergyRotamers.cc	pack / task / PackerTask.hh
rotamer_set_operations / AddGood2BPairEnergyRotamers.cc	io / pdb / pdb_writer.hh
rotamer_set_operations / AddGood2BPairEnergyRotamers.cc	pose / PDBInfo.hh
rotamer_set_operations / AddGood2BPairEnergyRotamers.cc	conformation / Residue.hh
rotamer_set_operations / AddGood2BPairEnergyRotamers.cc	pack / rotamer_set / RotamerSet.hh
rotamer_set_operations / AddGood2BPairEnergyRotamers.cc	pack / rotamer_set / RotamerSetFactory.hh
rotamer_set_operations / AddGood2BPairEnergyRotamers.cc	scoring / ScoreFunction.hh
rotamer_set_operations / AddGood2BPairEnergyRotamers.cc	pose / util.hh
rotamer_set_operations / AddGood2BPairEnergyRotamers.hh	pack / task / PackerTask.fwd.hh
rotamer_set_operations / AddGood2BPairEnergyRotamers.hh	pose / Pose.fwd.hh
rotamer_set_operations / AddGood2BPairEnergyRotamers.hh	conformation / Residue.fwd.hh
rotamer_set_operations / AddGood2BPairEnergyRotamers.hh	pack / rotamer_set / RotamerSet.fwd.hh
rotamer_set_operations / AddGood2BPairEnergyRotamers.hh	pack / rotamer_set / RotamerSetOperation.hh
rotamer_set_operations / AddGood2BPairEnergyRotamers.hh	scoring / ScoreFunction.fwd.hh
match_enzdes_util / AlignPoseToInvrotTreeMover.cc	id / AtomID.hh
match_enzdes_util / AlignPoseToInvrotTreeMover.cc	id / AtomID_Map.hh
match_enzdes_util / AlignPoseToInvrotTreeMover.cc	kinematics / FoldTree.hh
match_enzdes_util / AlignPoseToInvrotTreeMover.cc	pose / Pose.hh
match_enzdes_util / AlignPoseToInvrotTreeMover.cc	conformation / Residue.hh
match_enzdes_util / AlignPoseToInvrotTreeMover.cc	chemical / ResidueTypeSet.hh
match_enzdes_util / AlignPoseToInvrotTreeMover.cc	scoring / rms_util.hh
match_enzdes_util / AlignPoseToInvrotTreeMover.cc	util / SwitchResidueTypeSet.hh
match_enzdes_util / AlignPoseToInvrotTreeMover.cc	types.hh
match_enzdes_util / AlignPoseToInvrotTreeMover.cc	pose / util.hh
match_enzdes_util / AlignPoseToInvrotTreeMover.hh	chemical / ChemicalManager.fwd.hh
match_enzdes_util / AlignPoseToInvrotTreeMover.hh	pose / Pose.fwd.hh
match_enzdes_util / AlignPoseToInvrotTreeMover.hh	conformation / Residue.fwd.hh
match_enzdes_util / AlignPoseToInvrotTreeMover.hh	types.hh
match_enzdes_util / AllowedSeqposForGeomCst.cc	pose / Pose.hh
match_enzdes_util / AllowedSeqposForGeomCst.cc	conformation / Residue.hh
match_enzdes_util / AllowedSeqposForGeomCst.cc	types.hh
match_enzdes_util / AllowedSeqposForGeomCst.hh	pose / Pose.fwd.hh
match_enzdes_util / AllowedSeqposForGeomCst.hh	types.hh
CalcInterNeighborGroup.cc	conformation / find_neighbors.hh
CalcInterNeighborGroup.cc	conformation / PointGraph.hh
CalcInterNeighborGroup.cc	conformation / PointGraphData.hh
CalcInterNeighborGroup.cc	pose / Pose.hh
CalcInterNeighborGroup.hh	pose / Pose.fwd.hh
CalcInterNeighborGroup.hh	pose / metrics / PoseMetricCalculatorBase.hh
CalcInterNeighborGroup.hh	types.hh
Cluster.hh	types.hh
Cluster.impl.hh	io / silent / SilentStruct.hh
Cluster.impl.hh	types.hh
DecoySetEvaluation.cc	scoring / constraints / BoundConstraint.hh
DecoySetEvaluation.cc	scoring / constraints / ConstraintSet.hh
DecoySetEvaluation.cc	scoring / constraints / LocalCoordinateConstraint.hh
DecoySetEvaluation.cc	scoring / constraints / NamedAtomPairConstraint.hh
DecoySetEvaluation.cc	id / NamedStubID.hh
DecoySetEvaluation.cc	pose / Pose.hh
DecoySetEvaluation.cc	conformation / Residue.hh
DecoySetEvaluation.cc	io / silent / SilentFileData.hh
DecoySetEvaluation.cc	types.hh
DecoySetEvaluation.cc	pose / util.hh
DecoySetEvaluation.hh	scoring / constraints / ConstraintSet.fwd.hh
DecoySetEvaluation.hh	pose / Pose.hh
DecoySetEvaluation.hh	io / silent / SilentFileData.fwd.hh
DecoySetEvaluation.hh	types.hh
DecoySetEvaluation.impl.hh	pose / Pose.hh
DecoySetEvaluation.impl.hh	conformation / Residue.hh
DecoySetEvaluation.impl.hh	types.hh
EnergyLandscapeEvaluator.hh	types.hh
match_enzdes_util / EnzConstraintIO.cc	chemical / ChemicalManager.hh
match_enzdes_util / EnzConstraintIO.cc	scoring / constraints / Constraint.hh
match_enzdes_util / EnzConstraintIO.cc	scoring / constraints / Constraints.hh
match_enzdes_util / EnzConstraintIO.cc	scoring / constraints / ConstraintSet.hh
match_enzdes_util / EnzConstraintIO.cc	pose / PDBInfo.hh
match_enzdes_util / EnzConstraintIO.cc	pose / PDBPoseMap.hh
match_enzdes_util / EnzConstraintIO.cc	pose / Pose.hh
match_enzdes_util / EnzConstraintIO.cc	conformation / Residue.hh
match_enzdes_util / EnzConstraintIO.cc	scoring / ScoreFunction.hh
match_enzdes_util / EnzConstraintIO.hh	pose / Pose.fwd.hh
match_enzdes_util / EnzConstraintIO.hh	chemical / ResidueTypeSet.fwd.hh
match_enzdes_util / EnzConstraintIO.hh	scoring / ScoreFunction.fwd.hh
match_enzdes_util / EnzConstraintIO.hh	id / SequenceMapping.fwd.hh
match_enzdes_util / EnzConstraintIO.hh	types.hh
match_enzdes_util / EnzConstraintParameters.cc	scoring / constraints / AmbiguousConstraint.hh
match_enzdes_util / EnzConstraintParameters.cc	scoring / constraints / AngleConstraint.hh
match_enzdes_util / EnzConstraintParameters.cc	id / AtomID.hh
match_enzdes_util / EnzConstraintParameters.cc	scoring / constraints / AtomPairConstraint.hh
match_enzdes_util / EnzConstraintParameters.cc	scoring / constraints / BoundConstraint.hh
match_enzdes_util / EnzConstraintParameters.cc	scoring / func / CharmmPeriodicFunc.hh
match_enzdes_util / EnzConstraintParameters.cc	chemical / ChemicalManager.hh
match_enzdes_util / EnzConstraintParameters.cc	conformation / Conformation.hh
match_enzdes_util / EnzConstraintParameters.cc	scoring / constraints / Constraint.hh
match_enzdes_util / EnzConstraintParameters.cc	scoring / constraints / Constraints.hh
match_enzdes_util / EnzConstraintParameters.cc	scoring / constraints / ConstraintSet.hh
match_enzdes_util / EnzConstraintParameters.cc	scoring / constraints / DihedralConstraint.hh
match_enzdes_util / EnzConstraintParameters.cc	scoring / Energies.hh
match_enzdes_util / EnzConstraintParameters.cc	scoring / func / Func.hh
match_enzdes_util / EnzConstraintParameters.cc	chemical / GlobalResidueTypeSet.hh
match_enzdes_util / EnzConstraintParameters.cc	scoring / constraints / MultiConstraint.hh
match_enzdes_util / EnzConstraintParameters.cc	chemical / Patch.hh
match_enzdes_util / EnzConstraintParameters.cc	pose / PDBInfo.hh
match_enzdes_util / EnzConstraintParameters.cc	pose / Pose.hh
match_enzdes_util / EnzConstraintParameters.cc	io / Remarks.hh
match_enzdes_util / EnzConstraintParameters.cc	chemical / ResidueProperties.hh
match_enzdes_util / EnzConstraintParameters.cc	chemical / ResidueTypeFinder.hh
match_enzdes_util / EnzConstraintParameters.cc	chemical / ResidueTypeSet.hh
match_enzdes_util / EnzConstraintParameters.cc	scoring / ScoreFunction.hh
match_enzdes_util / EnzConstraintParameters.cc	id / SequenceMapping.hh
match_enzdes_util / EnzConstraintParameters.cc	pack / rotamers / SingleLigandRotamerLibrary.hh
match_enzdes_util / EnzConstraintParameters.cc	types.hh
match_enzdes_util / EnzConstraintParameters.cc	pose / variant_util.hh
match_enzdes_util / EnzConstraintParameters.hh	scoring / constraints / Constraint.fwd.hh
match_enzdes_util / EnzConstraintParameters.hh	scoring / func / Func.fwd.hh
match_enzdes_util / EnzConstraintParameters.hh	pose / Pose.fwd.hh
match_enzdes_util / EnzConstraintParameters.hh	chemical / ResidueTypeSet.fwd.hh
match_enzdes_util / EnzConstraintParameters.hh	scoring / ScoreFunction.fwd.hh
match_enzdes_util / EnzConstraintParameters.hh	id / SequenceMapping.fwd.hh
match_enzdes_util / EnzConstraintParameters.hh	types.hh
match_enzdes_util / EnzCstTemplateRes.cc	chemical / AA.hh
match_enzdes_util / EnzCstTemplateRes.cc	id / AtomID.hh
match_enzdes_util / EnzCstTemplateRes.cc	chemical / AtomType.hh
match_enzdes_util / EnzCstTemplateRes.cc	pose / Pose.hh
match_enzdes_util / EnzCstTemplateRes.cc	conformation / Residue.hh
match_enzdes_util / EnzCstTemplateRes.cc	chemical / ResidueTypeSet.hh
match_enzdes_util / EnzCstTemplateRes.cc	id / SequenceMapping.hh
match_enzdes_util / EnzCstTemplateRes.hh	id / AtomID.fwd.hh
match_enzdes_util / EnzCstTemplateRes.hh	pose / Pose.fwd.hh
match_enzdes_util / EnzCstTemplateRes.hh	conformation / Residue.fwd.hh
match_enzdes_util / EnzCstTemplateRes.hh	chemical / ResidueType.fwd.hh
match_enzdes_util / EnzCstTemplateRes.hh	chemical / ResidueTypeSet.fwd.hh
match_enzdes_util / EnzCstTemplateRes.hh	id / SequenceMapping.fwd.hh
match_enzdes_util / EnzdesCacheableObserver.cc	pose / datacache / CacheableObserverType.hh
match_enzdes_util / EnzdesCacheableObserver.cc	conformation / Conformation.hh
match_enzdes_util / EnzdesCacheableObserver.cc	conformation / signals / LengthEvent.hh
match_enzdes_util / EnzdesCacheableObserver.cc	pose / datacache / ObserverCache.hh
match_enzdes_util / EnzdesCacheableObserver.cc	pack / task / PackerTask.hh
match_enzdes_util / EnzdesCacheableObserver.cc	pose / Pose.hh
match_enzdes_util / EnzdesCacheableObserver.cc	conformation / Residue.hh
match_enzdes_util / EnzdesCacheableObserver.cc	scoring / constraints / ResidueTypeConstraint.hh
match_enzdes_util / EnzdesCacheableObserver.cc	id / SequenceMapping.hh
match_enzdes_util / EnzdesCacheableObserver.cc	sequence / SequenceProfile.hh
match_enzdes_util / EnzdesCacheableObserver.cc	scoring / constraints / SequenceProfileConstraint.hh
match_enzdes_util / EnzdesCacheableObserver.hh	pose / datacache / CacheableObserver.hh
match_enzdes_util / EnzdesCacheableObserver.hh	scoring / constraints / Constraint.fwd.hh
match_enzdes_util / EnzdesCacheableObserver.hh	conformation / signals / LengthEvent.fwd.hh
match_enzdes_util / EnzdesCacheableObserver.hh	pack / task / PackerTask.fwd.hh
match_enzdes_util / EnzdesCacheableObserver.hh	pose / Pose.fwd.hh
match_enzdes_util / EnzdesCacheableObserver.hh	conformation / Residue.fwd.hh
match_enzdes_util / EnzdesCacheableObserver.hh	types.hh
match_enzdes_util / EnzdesCstCache.cc	id / AtomID.hh
match_enzdes_util / EnzdesCstCache.cc	scoring / constraints / Constraint.hh
match_enzdes_util / EnzdesCstCache.cc	pose / Pose.hh
match_enzdes_util / EnzdesCstCache.cc	chemical / ResidueType.hh
match_enzdes_util / EnzdesCstCache.cc	id / SequenceMapping.hh
match_enzdes_util / EnzdesCstCache.hh	scoring / constraints / Constraint.fwd.hh
match_enzdes_util / EnzdesCstCache.hh	pose / Pose.fwd.hh
match_enzdes_util / EnzdesCstCache.hh	id / SequenceMapping.fwd.hh
match_enzdes_util / EnzdesCstCache.hh	types.hh
match_enzdes_util / EnzdesLoopsFile.hh	types.hh
match_enzdes_util / EnzdesSeqRecoveryCache.cc	pose / Pose.hh
match_enzdes_util / EnzdesSeqRecoveryCache.cc	conformation / Residue.hh
match_enzdes_util / EnzdesSeqRecoveryCache.cc	id / SequenceMapping.hh
match_enzdes_util / EnzdesSeqRecoveryCache.cc	types.hh
match_enzdes_util / EnzdesSeqRecoveryCache.hh	pose / Pose.fwd.hh
match_enzdes_util / EnzdesSeqRecoveryCache.hh	id / SequenceMapping.fwd.hh
match_enzdes_util / EnzdesSeqRecoveryCache.hh	types.hh
match_enzdes_util / ExternalGeomSampler.hh	types.hh
IGEdgeReweighters.cc	pack / task / PackerTask.hh
IGEdgeReweighters.cc	pose / PDBInfo.hh
IGEdgeReweighters.cc	pose / Pose.hh
IGEdgeReweighters.cc	conformation / Residue.hh
IGEdgeReweighters.hh	pack / task / IGEdgeReweightContainer.hh
InteratomicVarianceMatrix.cc	types.hh
InteratomicVarianceMatrix.hh	types.hh
match_enzdes_util / InvrotTarget.cc	scoring / constraints / MultiConstraint.hh
match_enzdes_util / InvrotTarget.cc	pose / Pose.hh
match_enzdes_util / InvrotTarget.cc	conformation / Residue.hh
match_enzdes_util / InvrotTree.cc	pack / rotamer_set / bb_independent_rotamers.hh
match_enzdes_util / InvrotTree.cc	scoring / constraints / Constraint.hh
match_enzdes_util / InvrotTree.cc	io / pdb / pdb_writer.hh
match_enzdes_util / InvrotTree.cc	pose / Pose.hh
match_enzdes_util / InvrotTree.cc	conformation / Residue.hh
match_enzdes_util / InvrotTree.cc	conformation / ResidueFactory.hh
match_enzdes_util / InvrotTree.cc	chemical / ResidueType.hh
match_enzdes_util / InvrotTree.hh	scoring / constraints / Constraint.fwd.hh
match_enzdes_util / InvrotTree.hh	pose / Pose.fwd.hh
match_enzdes_util / InvrotTree.hh	types.hh
match_enzdes_util / InvrotTreeNode.cc	scoring / constraints / AmbiguousConstraint.hh
match_enzdes_util / InvrotTreeNode.cc	conformation / Atom.hh
match_enzdes_util / InvrotTreeNode.cc	scoring / constraints / MultiConstraint.hh
match_enzdes_util / InvrotTreeNode.cc	io / pdb / pdb_writer.hh
match_enzdes_util / InvrotTreeNode.cc	pose / Pose.hh
match_enzdes_util / InvrotTreeNode.cc	conformation / Residue.hh
match_enzdes_util / InvrotTreeNode.hh	id / AtomID.fwd.hh
match_enzdes_util / InvrotTreeNodeBase.cc	conformation / Residue.hh
match_enzdes_util / InvrotTreeNodeBase.hh	scoring / constraints / Constraint.fwd.hh
match_enzdes_util / InvrotTreeNodeBase.hh	pose / Pose.fwd.hh
match_enzdes_util / InvrotTreeNodeBase.hh	conformation / Residue.fwd.hh
match_enzdes_util / InvrotTreeNodeBase.hh	types.hh
KCluster.cc	io / silent / SilentFileData.hh
KCluster.cc	io / silent / SilentFileOptions.hh
KCluster.hh	types.hh
match_enzdes_util / LigandConformer.cc	id / AtomID.hh
match_enzdes_util / LigandConformer.cc	chemical / AtomType.hh
match_enzdes_util / LigandConformer.cc	conformation / Residue.hh
match_enzdes_util / LigandConformer.cc	chemical / ResidueConnection.hh
match_enzdes_util / LigandConformer.hh	id / AtomID.fwd.hh
match_enzdes_util / LigandConformer.hh	conformation / Residue.fwd.hh
match_enzdes_util / LigandConformer.hh	chemical / ResidueType.fwd.hh
match_enzdes_util / LigandConformer.hh	types.hh
match_enzdes_util / MatchConstraintFileInfo.cc	pack / rotamer_set / bb_independent_rotamers.hh
match_enzdes_util / MatchConstraintFileInfo.cc	chemical / Patch.hh
match_enzdes_util / MatchConstraintFileInfo.cc	conformation / Residue.hh
match_enzdes_util / MatchConstraintFileInfo.cc	chemical / ResidueTypeSet.hh
match_enzdes_util / MatchConstraintFileInfo.cc	chemical / ResidueTypeSet.srlz.hh
match_enzdes_util / MatchConstraintFileInfo.cc	pose / variant_util.hh
match_enzdes_util / MatchConstraintFileInfo.cc	chemical / VariantType.hh
match_enzdes_util / MatchConstraintFileInfo.hh	pose / Pose.fwd.hh
match_enzdes_util / MatchConstraintFileInfo.hh	conformation / Residue.fwd.hh
match_enzdes_util / MatchConstraintFileInfo.hh	chemical / ResidueType.fwd.hh
match_enzdes_util / MatchConstraintFileInfo.hh	chemical / ResidueTypeSet.fwd.hh
match_enzdes_util / MatchConstraintFileInfo.hh	types.hh
NetworkAlgorithms.cc	pose / Pose.hh
NetworkAlgorithms.cc	conformation / Residue.hh
NetworkAlgorithms.hh	pose / Pose.fwd.hh
NetworkAlgorithms.hh	types.hh
pose_manipulation / pose_manipulation.cc	id / AtomID_Map.hh
pose_manipulation / pose_manipulation.cc	chemical / ChemicalManager.hh
pose_manipulation / pose_manipulation.cc	conformation / Conformation.hh
pose_manipulation / pose_manipulation.cc	scoring / Energies.hh
pose_manipulation / pose_manipulation.cc	kinematics / FoldTree.hh
pose_manipulation / pose_manipulation.cc	kinematics / MoveMap.hh
pose_manipulation / pose_manipulation.cc	pack / task / operation / OperateOnResidueSubset.hh
pose_manipulation / pose_manipulation.cc	pose / Pose.hh
pose_manipulation / pose_manipulation.cc	conformation / Residue.hh
pose_manipulation / pose_manipulation.cc	select / residue_selector / ResidueIndexSelector.hh
pose_manipulation / pose_manipulation.cc	chemical / ResidueProperties.hh
pose_manipulation / pose_manipulation.cc	chemical / ResidueType.hh
pose_manipulation / pose_manipulation.cc	chemical / ResidueTypeSet.hh
pose_manipulation / pose_manipulation.cc	pack / task / operation / ResLvlTaskOperations.hh
pose_manipulation / pose_manipulation.cc	scoring / rms_util.hh
pose_manipulation / pose_manipulation.cc	scoring / ScoreFunction.hh
pose_manipulation / pose_manipulation.cc	pack / task / operation / TaskOperations.hh
pose_manipulation / pose_manipulation.cc	types.hh
pose_manipulation / pose_manipulation.cc	select / util.hh
pose_manipulation / pose_manipulation.cc	pose / util.hh
pose_manipulation / pose_manipulation.cc	kinematics / util.hh
pose_manipulation / pose_manipulation.cc	chemical / util.hh
pose_manipulation / pose_manipulation.cc	pose / util.tmpl.hh
pose_manipulation / pose_manipulation.cc	pose / variant_util.hh
pose_manipulation / pose_manipulation.cc	chemical / VariantType.hh
pose_manipulation / pose_manipulation.hh	pose / Pose.fwd.hh
pose_manipulation / pose_manipulation.hh	select / residue_selector / ResidueSelector.fwd.hh
pose_manipulation / pose_manipulation.hh	chemical / ResidueType.fwd.hh
pose_manipulation / pose_manipulation.hh	chemical / ResidueTypeSet.fwd.hh
pose_manipulation / pose_manipulation.hh	scoring / ScoreFunction.fwd.hh
pose_manipulation / pose_manipulation.hh	types.hh
PyReturnValuePolicyTest.hh	pose / Pose.hh
PyReturnValuePolicyTest.hh	scoring / ScoreFunction.hh
PyReturnValuePolicyTest.hh	scoring / ScoreFunctionFactory.hh
PyReturnValuePolicyTest.hh	types.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.cc	scoring / Energies.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.cc	pack / task / PackerTask.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.cc	pose / Pose.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.cc	conformation / Residue.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.cc	pack / dunbrack / RotamerLibrary.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.cc	pack / rotamer_set / RotamerSet.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.cc	pack / rotamer_set / RotamerSet_.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.cc	pack / rotamers / SingleResidueRotamerLibrary.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.cc	pack / rotamers / SingleResidueRotamerLibraryFactory.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.cc	scoring / TenANeighborGraph.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.hh	pack / rotamer_set / BumpSelector.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.hh	pack / task / PackerTask.fwd.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.hh	pose / Pose.fwd.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.hh	conformation / Residue.fwd.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.hh	pack / rotamer_set / RotamerSet.fwd.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.hh	pack / rotamer_set / RotamerSetOperation.hh
rotamer_set_operations / RigidBodyMoveRotSetOps.hh	scoring / ScoreFunction.fwd.hh
SamplerPlusPlus.hh	pose / Pose.fwd.hh
SamplerPlusPlus.hh	id / TorsionID.fwd.hh
SamplerPlusPlus.hh	types.hh
rotamer_set_operations / SpecialRotamerRotSetOps.cc	conformation / Residue.hh
rotamer_set_operations / SpecialRotamerRotSetOps.cc	pack / rotamer_set / RotamerSet.hh
rotamer_set_operations / SpecialRotamerRotSetOps.cc	pose / variant_util.hh
rotamer_set_operations / SpecialRotamerRotSetOps.cc	chemical / VariantType.hh
rotamer_set_operations / SpecialRotamerRotSetOps.hh	pack / task / PackerTask.fwd.hh
rotamer_set_operations / SpecialRotamerRotSetOps.hh	pose / Pose.fwd.hh
rotamer_set_operations / SpecialRotamerRotSetOps.hh	conformation / Residue.fwd.hh
rotamer_set_operations / SpecialRotamerRotSetOps.hh	pack / rotamer_set / RotamerSet.fwd.hh
rotamer_set_operations / SpecialRotamerRotSetOps.hh	pack / rotamer_set / RotamerSetOperation.hh
rotamer_set_operations / SpecialRotamerRotSetOps.hh	scoring / ScoreFunction.fwd.hh
superimpose.cc	id / AtomID.hh
superimpose.cc	conformation / Conformation.hh
superimpose.cc	kinematics / Jump.hh
superimpose.cc	id / NamedAtomID.hh
superimpose.cc	pose / Pose.hh
superimpose.cc	chemical / ResidueType.hh
superimpose.cc	kinematics / Stub.hh
superimpose.cc	types.hh
superimpose.hh	pose / Pose.fwd.hh
superimpose.hh	types.hh
sample_around / util.cc	chemical / AA.hh
rigid_body / util.cc	id / AtomID.hh
sample_around / util.cc	io / silent / BinarySilentStruct.hh
sample_around / util.cc	chemical / ChemicalManager.hh
sample_around / util.cc	kinematics / FoldTree.hh
rigid_body / util.cc	kinematics / FoldTree.hh
sample_around / util.cc	import_pose / import_pose.hh
sample_around / util.cc	init / init.hh
sample_around / util.cc	kinematics / Jump.hh
sample_around / util.cc	kinematics / MoveMap.hh
sample_around / util.cc	pose / Pose.hh
rigid_body / util.cc	pose / Pose.hh
sample_around / util.cc	conformation / Residue.hh
rigid_body / util.cc	conformation / Residue.hh
sample_around / util.cc	conformation / ResidueFactory.hh
sample_around / util.cc	chemical / ResidueTypeSet.hh
sample_around / util.cc	scoring / rms_util.hh
rigid_body / util.cc	scoring / rna / RNA_CentroidInfo.hh
sample_around / util.cc	scoring / ScoreFunction.hh
sample_around / util.cc	scoring / ScoreFunctionFactory.hh
sample_around / util.cc	scoring / ScoringManager.hh
sample_around / util.cc	io / silent / SilentFileData.hh
sample_around / util.cc	kinematics / Stub.hh
rigid_body / util.cc	kinematics / Stub.hh
sample_around / util.cc	types.hh
sample_around / util.cc	pose / util.hh
sample_around / util.cc	chemical / rna / util.hh
sample_around / util.cc	chemical / util.hh
rigid_body / util.cc	chemical / rna / util.hh
rigid_body / util.hh	id / AtomID.fwd.hh
sample_around / util.hh	pose / Pose.fwd.hh
rigid_body / util.hh	pose / Pose.fwd.hh
rigid_body / util.hh	conformation / Residue.fwd.hh
sample_around / util.hh	scoring / ScoreFunction.fwd.hh
rigid_body / util.hh	kinematics / Stub.fwd.hh
sample_around / util.hh	types.hh
rigid_body / util.hh	types.hh
match_enzdes_util / util_functions.cc	scoring / constraints / AmbiguousConstraint.hh
match_enzdes_util / util_functions.cc	kinematics / tree / Atom.hh
match_enzdes_util / util_functions.cc	id / AtomID.hh
match_enzdes_util / util_functions.cc	kinematics / AtomTree.hh
match_enzdes_util / util_functions.cc	scoring / constraints / BackboneStubConstraint.hh
match_enzdes_util / util_functions.cc	scoring / constraints / BoundConstraint.hh
match_enzdes_util / util_functions.cc	conformation / Conformation.hh
match_enzdes_util / util_functions.cc	scoring / constraints / CoordinateConstraint.hh
match_enzdes_util / util_functions.cc	scoring / constraints / MultiConstraint.hh
match_enzdes_util / util_functions.cc	pose / Pose.hh
match_enzdes_util / util_functions.cc	conformation / Residue.hh
match_enzdes_util / util_functions.cc	chemical / ResidueType.hh
match_enzdes_util / util_functions.cc	types.hh
match_enzdes_util / util_functions.hh	scoring / constraints / AmbiguousConstraint.fwd.hh
match_enzdes_util / util_functions.hh	id / AtomID.fwd.hh
match_enzdes_util / util_functions.hh	scoring / func / Func.fwd.hh
match_enzdes_util / util_functions.hh	pose / Pose.fwd.hh
match_enzdes_util / util_functions.hh	conformation / Residue.fwd.hh
match_enzdes_util / util_functions.hh	chemical / ResidueType.fwd.hh
match_enzdes_util / util_functions.hh	types.hh