energy_methods → conformation Relation

File in src/core/energy_methods	Includes file in src/core/conformation
AACompositionEnergy.cc	Residue.hh
AACompositionEnergy.hh	Residue.fwd.hh
AARepeatEnergy.cc	Residue.hh
AARepeatEnergy.hh	Residue.fwd.hh
AbegoEnergy.cc	Conformation.hh
AbegoEnergy.cc	Residue.hh
ArgCationPiEnergy.cc	Conformation.hh
ArgCationPiEnergy.cc	Residue.hh
AromaticBackboneRestraintEnergy.cc	Residue.hh
AspartimidePenaltyEnergy.cc	Conformation.hh
AspartimidePenaltyEnergy.cc	Residue.hh
AspartimidePenaltyEnergy.cc	ResidueFactory.hh
AspartimidePenaltyEnergy.cc	symmetry / SymmetryInfo.hh
BranchEnergy.cc	Residue.hh
BranchEnergy.cc	symmetry / SymmetricConformation.hh
BranchEnergy.cc	symmetry / SymmetryInfo.hh
Burial_v2Energy.cc	Atom.hh
Burial_v2Energy.cc	Residue.hh
BurialEnergy.cc	Atom.hh
BurialEnergy.cc	Residue.hh
CartesianBondedEnergy.cc	Conformation.hh
CartesianBondedEnergy.cc	Residue.hh
CartesianBondedEnergy.cc	ResidueFactory.hh
CartesianBondedEnergy.cc	symmetry / SymmetryInfo.hh
CenHBEnergy.cc	Residue.hh
CenPairEnergy.cc	Conformation.hh
CenPairEnergy.cc	Residue.hh
CenPairMotifDegreeEnergy.cc	symmetry / SymmetricConformation.hh
CenPairMotifDegreeEnergy.cc	symmetry / SymmetryInfo.fwd.hh
CenPairMotifDegreeEnergy.cc	symmetry / SymmetryInfo.hh
CenPairMotifEnergy.cc	symmetry / SymmetricConformation.hh
CenPairMotifEnergy.cc	symmetry / SymmetryInfo.fwd.hh
CenPairMotifEnergy.cc	symmetry / SymmetryInfo.hh
CenRotEnvEnergy.cc	Residue.hh
CenRotPairEnergy.cc	Residue.hh
CentroidDisulfideEnergy.cc	Residue.hh
ChainbreakEnergy.cc	Residue.hh
ChainbreakEnergy.cc	symmetry / SymmetricConformation.hh
ChainbreakEnergy.cc	symmetry / SymmetryInfo.hh
ChemicalShiftAnisotropyEnergy.cc	Residue.hh
ContactOrderEnergy.cc	Residue.hh
ContextIndependentGeometricSolEnergy.cc	Residue.hh
CovalentLabelingEnergy.cc	Atom.hh
CovalentLabelingEnergy.cc	Residue.hh
CovalentLabelingFAEnergy.cc	Atom.hh
CovalentLabelingFAEnergy.cc	Residue.hh
CustomAtomPairEnergy.cc	Conformation.hh
CustomAtomPairEnergy.cc	Residue.hh
CustomAtomPairEnergy.cc	RotamerSetBase.hh
D2H_SA_Energy.cc	symmetry / SymmetricConformation.hh
D2H_SA_Energy.cc	symmetry / SymmetryInfo.hh
DEEREnergy.cc	Residue.hh
DipolarCouplingEnergy.cc	Residue.hh
DirectReadoutEnergy.cc	Residue.hh
DirectReadoutEnergy.hh	Residue.fwd.hh
DistanceChainbreakEnergy.cc	Residue.hh
DisulfideMatchingEnergy.cc	Residue.hh
DNA_BaseEnergy.cc	Residue.hh
DNA_DihedralEnergy.cc	Conformation.hh
DNA_DihedralEnergy.cc	Residue.functions.hh
DNA_DihedralEnergy.cc	Residue.hh
DNA_DihedralEnergy.cc	symmetry / SymmetryInfo.hh
DNA_EnvPairEnergy.cc	Residue.hh
DNA_ReferenceEnergy.cc	Residue.hh
DumpTrajectoryEnergy.cc	Residue.hh
DumpTrajectoryEnergy.hh	Residue.fwd.hh
ElecDensAllAtomCenEnergy.cc	Atom.hh
ElecDensAllAtomCenEnergy.cc	Residue.hh
ElecDensAllAtomCenEnergy.cc	symmetry / SymmetricConformation.hh
ElecDensAllAtomCenEnergy.cc	symmetry / SymmetryInfo.hh
ElecDensAtomwiseEnergy.cc	Atom.hh
ElecDensAtomwiseEnergy.cc	Residue.hh
ElecDensAtomwiseEnergy.hh	Residue.fwd.hh
ElecDensAtomwiseEnergy.hh	symmetry / SymmetryInfo.fwd.hh
ElecDensCenEnergy.cc	Atom.hh
ElecDensCenEnergy.cc	Residue.hh
ElecDensCenEnergy.cc	symmetry / SymmetricConformation.hh
ElecDensCenEnergy.cc	symmetry / SymmetryInfo.hh
ElecDensEnergy.cc	Atom.hh
ElecDensEnergy.cc	Residue.hh
ElecDensEnergy.cc	symmetry / SymmetricConformation.hh
ElecDensEnergy.cc	symmetry / SymmetryInfo.fwd.hh
ElecDensEnergy.cc	symmetry / SymmetryInfo.hh
EnvEnergy.cc	Conformation.hh
EnvEnergy.cc	Residue.hh
EnvSmoothEnergy.cc	Atom.hh
EnvSmoothEnergy.cc	Residue.hh
EnvSmoothEnergy.cc	symmetry / SymmetricConformation.hh
EnvSmoothEnergy.cc	symmetry / SymmetryInfo.hh
EnvSmoothEnergy.hh	Atom.fwd.hh
ExactOccludedHbondSolEnergy.cc	Atom.hh
ExactOccludedHbondSolEnergy.cc	Residue.hh
FA_ElecEnergyAroAll.cc	Residue.hh
FA_ElecEnergyAroAll.cc	RotamerSetBase.hh
FA_ElecEnergyAroAro.cc	Residue.hh
FA_ElecEnergyAroAro.cc	RotamerSetBase.hh
FA_GrpElecEnergy.cc	Residue.hh
FA_GrpElecEnergy.cc	RotamerSetBase.hh
Fa_MbenvEnergy.cc	Residue.hh
Fa_MbenvEnergy.hh	Atom.fwd.hh
Fa_MbsolvEnergy.cc	Residue.hh
Fa_MbsolvEnergy.hh	Atom.fwd.hh
FACTSEnergy.cc	RotamerSetBase.hh
FACTSEnergy.cc	RotamerSetCacheableDataType.hh
FACTSEnergy.hh	RotamerSetBase.hh
FaMPEnvEnergy.cc	Conformation.hh
FaMPEnvEnergy.cc	membrane / MembraneInfo.hh
FaMPEnvEnergy.cc	Residue.hh
FaMPEnvEnergy.cc	membrane / SpanningTopology.hh
FaMPEnvEnergy.hh	Atom.fwd.hh
FaMPEnvEnergy.hh	Conformation.fwd.hh
FaMPEnvEnergy.hh	membrane / SpanningTopology.fwd.hh
FaMPEnvSmoothEnergy.cc	Atom.hh
FaMPEnvSmoothEnergy.cc	Conformation.hh
FaMPEnvSmoothEnergy.cc	membrane / MembraneInfo.hh
FaMPEnvSmoothEnergy.cc	Residue.hh
FaMPEnvSmoothEnergy.hh	Atom.fwd.hh
FaMPSolvEnergy.cc	Atom.hh
FaMPSolvEnergy.cc	Conformation.hh
FaMPSolvEnergy.cc	membrane / MembraneInfo.hh
FaMPSolvEnergy.cc	Residue.hh
FaMPSolvEnergy.cc	membrane / SpanningTopology.hh
FaMPSolvEnergy.hh	Atom.fwd.hh
FaMPSolvEnergy.hh	Conformation.hh
FaMPSolvEnergy.hh	membrane / SpanningTopology.fwd.hh
FastDensEnergy.cc	Atom.hh
FastDensEnergy.cc	Residue.hh
FastDensEnergy.cc	symmetry / SymmetricConformation.hh
FastDensEnergy.cc	symmetry / SymmetryInfo.fwd.hh
FastDensEnergy.cc	symmetry / SymmetryInfo.hh
FastSAXSEnergy.cc	Residue.hh
FiberDiffractionEnergy.cc	Residue.hh
FiberDiffractionEnergy.cc	symmetry / SymmetricConformation.hh
FiberDiffractionEnergy.cc	symmetry / SymmetryInfo.hh
FiberDiffractionEnergyDens.cc	Residue.hh
FiberDiffractionEnergyDens.cc	symmetry / SymmetricConformation.hh
FiberDiffractionEnergyDens.cc	symmetry / SymmetryInfo.hh
FreeDOF_Energy.cc	Residue.hh
FreeDOF_Energy.hh	Residue.fwd.hh
FullatomDisulfideEnergy.cc	Conformation.hh
FullatomDisulfideEnergy.cc	Residue.hh
GaussianOverlapEnergy.cc	Residue.hh
GenBornEnergy.cc	RotamerSetBase.hh
GenBornEnergy.cc	RotamerSetCacheableDataType.hh
GenericBondedEnergy.cc	Residue.hh
GenericBondedEnergy.cc	symmetry / SymmetryInfo.hh
GenericBondedEnergy.hh	Residue.fwd.hh
GoapEnergy.cc	Residue.hh
HackAroEnergy.cc	Residue.hh
HRF_MSLabelingEnergy.cc	Atom.hh
HRF_MSLabelingEnergy.cc	Residue.hh
HRFDynamicsEnergy.cc	Atom.hh
HRFDynamicsEnergy.cc	Residue.hh
HybridVDW_Energy.cc	Residue.hh
HydroxylTorsionEnergy.cc	Residue.hh
HydroxylTorsionEnergy.hh	Residue.fwd.hh
LinearBranchEnergy.cc	Conformation.hh
LinearBranchEnergy.cc	Residue.hh
LinearBranchEnergy.hh	Residue.fwd.hh
LinearChainbreakEnergy.cc	Conformation.hh
LinearChainbreakEnergy.cc	Residue.hh
LinearChainbreakEnergy.hh	Residue.fwd.hh
LK_hack.cc	Residue.hh
LK_hack.hh	Atom.fwd.hh
LK_PolarNonPolarEnergy.cc	Residue.hh
LK_PolarNonPolarEnergy.hh	Atom.fwd.hh
LoopCloseEnergy.cc	Residue.hh
LoopCloseEnergy.hh	Residue.fwd.hh
MembraneCbetaEnergy.cc	Residue.hh
MembraneCenPairEnergy.cc	Residue.hh
MembraneCenPairEnergy.cc	symmetry / SymmetricConformation.hh
MembraneCenPairEnergy.cc	symmetry / SymmetryInfo.hh
MembraneEnvEnergy.cc	Residue.hh
MembraneEnvSmoothEnergy.cc	Atom.hh
MembraneEnvSmoothEnergy.cc	Residue.hh
MembraneEnvSmoothEnergy.hh	Atom.fwd.hh
MembraneLipo.cc	symmetry / SymmetricConformation.hh
MembraneLipo.cc	symmetry / SymmetryInfo.hh
MgEnergy.cc	Residue.hh
MgEnergy.hh	Residue.fwd.hh
MHCEpitopeEnergy.cc	Residue.hh
MHCEpitopeEnergy.cc	symmetry / SymmetricConformation.hh
MHCEpitopeEnergy.cc	symmetry / SymmetryInfo.hh
MHCEpitopeEnergy.hh	Residue.fwd.hh
MotifDockEnergy.cc	Residue.hh
MPCBetaEnergy.cc	Conformation.hh
MPCBetaEnergy.cc	membrane / MembraneInfo.hh
MPCBetaEnergy.cc	Residue.hh
MPCBetaEnergy.cc	membrane / SpanningTopology.hh
MPCBetaEnergy.hh	Conformation.fwd.hh
MPEnvEnergy.cc	Conformation.hh
MPEnvEnergy.cc	membrane / MembraneInfo.hh
MPEnvEnergy.cc	Residue.hh
MPEnvEnergy.cc	membrane / SpanningTopology.hh
MPEnvEnergy.hh	Conformation.fwd.hh
MPEnvEnergy.hh	Residue.fwd.hh
MPEnvEnergy.hh	membrane / SpanningTopology.fwd.hh
MPHelicalityEnergy.cc	Atom.hh
MPHelicalityEnergy.cc	Conformation.hh
MPHelicalityEnergy.cc	membrane / MembraneInfo.hh
MPHelicalityEnergy.cc	Residue.hh
MPHelicalityEnergy.cc	membrane / SpanningTopology.hh
MPHelicalityEnergy.hh	Atom.fwd.hh
MPPairEnergy.cc	Conformation.hh
MPPairEnergy.cc	membrane / MembraneInfo.hh
MPPairEnergy.cc	Residue.hh
MPPairEnergy.cc	membrane / SpanningTopology.hh
MPPairEnergy.cc	symmetry / SymmetricConformation.hh
MPPairEnergy.cc	symmetry / SymmetryInfo.hh
MPResidueLipophilicityEnergy.cc	Atom.hh
MPResidueLipophilicityEnergy.cc	Conformation.hh
MPResidueLipophilicityEnergy.cc	membrane / MembraneInfo.hh
MPResidueLipophilicityEnergy.cc	Residue.hh
MPResidueLipophilicityEnergy.cc	membrane / SpanningTopology.hh
MPResidueLipophilicityEnergy.hh	Atom.fwd.hh
MPSpanAngleEnergy.cc	membrane / Exceptions.hh
MPSpanAngleEnergy.cc	membrane / MembraneInfo.hh
MPSpanAngleEnergy.cc	membrane / Span.hh
MPSpanAngleEnergy.cc	membrane / SpanningTopology.hh
MPSpanAngleEnergy.hh	membrane / Span.hh
MPSpanInsertionEnergy.cc	membrane / Exceptions.hh
MPSpanInsertionEnergy.cc	membrane / MembraneInfo.hh
MPSpanInsertionEnergy.cc	membrane / Span.hh
MPSpanInsertionEnergy.cc	membrane / SpanningTopology.hh
MPSpanInsertionEnergy.hh	membrane / Span.hh
MultipoleElecEnergy.cc	RotamerSetBase.hh
MultipoleElecEnergy.cc	RotamerSetCacheableDataType.hh
NetChargeEnergy.cc	Residue.hh
NetChargeEnergy.hh	Residue.fwd.hh
non_scorefxn_exact_model.cc	Atom.hh
non_scorefxn_exact_model.cc	Residue.hh
NPDHBondEnergy.cc	Conformation.hh
NPDHBondEnergy.cc	membrane / MembraneInfo.hh
NPDHBondEnergy.cc	Residue.hh
NPDHBondEnergy.cc	RotamerSetBase.hh
OccludedHbondSolEnergy.cc	Residue.hh
OccludedHbondSolEnergy_onebody.cc	Residue.hh
OmegaTetherEnergy.cc	Residue.hh
P_AA_Energy.hh	Residue.fwd.hh
P_AA_pp_Energy.cc	Residue.functions.hh
P_AA_pp_Energy.cc	Residue.hh
P_AA_pp_Energy.hh	Residue.fwd.hh
P_AA_ss_Energy.cc	Residue.hh
P_AA_ss_Energy.hh	Residue.fwd.hh
PairEnergy.cc	Residue.hh
PairEnergy.cc	RotamerSetBase.hh
PeptideBondEnergy.cc	Residue.hh
pHEnergy.cc	Residue.hh
PointWaterEnergy.cc	RotamerSetBase.hh
PoissonBoltzmannEnergy.cc	Residue.hh
ProClosureEnergy.cc	Residue.hh
ProQ_Energy.cc	symmetry / SymmetricConformation.hh
ProQ_Energy.cc	symmetry / SymmetryInfo.hh
ProQ_Energy.hh	Residue.hh
RamachandranEnergy.cc	Residue.functions.hh
RamachandranEnergy.cc	Residue.hh
RamachandranEnergy2B.cc	Residue.hh
RamaPreProEnergy.cc	Conformation.hh
RamaPreProEnergy.cc	Residue.hh
RamaPreProEnergy.cc	ResidueFactory.hh
RamaPreProEnergy.cc	symmetry / SymmetryInfo.hh
ReferenceEnergy.cc	Residue.hh
ReferenceEnergyNoncanonical.cc	Residue.hh
ResidualDipolarCouplingEnergy.cc	Residue.hh
ResidualDipolarCouplingEnergy_Rohl.cc	Residue.hh
RG_Energy_Fast.cc	Atom.hh
RG_Energy_Fast.cc	Residue.hh
RG_Energy_Fast.cc	symmetry / SymmetricConformation.hh
RG_Energy_Fast.cc	symmetry / SymmetryInfo.fwd.hh
RG_Energy_Fast.cc	symmetry / SymmetryInfo.hh
RG_Energy_RNA.cc	Atom.hh
RG_Energy_RNA.cc	Residue.hh
RG_LocalEnergy.cc	Atom.hh
RG_LocalEnergy.cc	Residue.hh
RingClosureEnergy.cc	Residue.hh
RNA_BulgeEnergy.cc	Residue.hh
RNA_ChemicalMappingEnergy.cc	Residue.hh
RNA_ChemicalShiftEnergy.cc	Atom.hh
RNA_ChemicalShiftEnergy.cc	Residue.hh
RNA_CoarseDistEnergy.cc	Residue.hh
RNA_CoarseDistEnergy.cc	RotamerSetBase.hh
RNA_CoarseDistEnergy.hh	Residue.fwd.hh
RNA_CoarseDistEnergy.hh	RotamerSetBase.fwd.hh
RNA_DataBackboneEnergy.cc	Residue.hh
RNA_FA_ElecEnergy.cc	Residue.hh
RNA_FA_ElecEnergy.cc	RotamerSetBase.hh
RNA_FullAtomStackingEnergy.cc	Residue.hh
RNA_FullAtomVDW_BasePhosphate.cc	Residue.hh
RNA_JR_SuiteEnergy.cc	Residue.hh
RNA_JR_SuiteEnergy.hh	Atom.fwd.hh
RNA_LJ_BaseEnergy.cc	Residue.hh
RNA_LJ_BaseEnergy.hh	Atom.fwd.hh
RNA_MgPointEnergy.cc	Residue.hh
RNA_MgPointEnergy.hh	Residue.fwd.hh
RNA_PairwiseLowResolutionEnergy.cc	Residue.hh
RNA_StubCoordinateEnergy.cc	Residue.hh
RNA_SugarCloseEnergy.cc	Residue.hh
RNA_SuiteEnergy.cc	Conformation.hh
RNA_SuiteEnergy.cc	Residue.hh
RNA_SuiteEnergy.cc	symmetry / SymmetryInfo.hh
RNA_TorsionEnergy.cc	Residue.hh
RNA_VDW_Energy.cc	Residue.hh
RNP_LowResEnergy.cc	Residue.hh
RNP_LowResPairDistEnergy.cc	Residue.hh
RNP_LowResStackEnergy.cc	Residue.hh
SASAEnergy.cc	RotamerSetBase.hh
SASAEnergy.cc	RotamerSetCacheableDataType.hh
SAXSEnergy.cc	Residue.hh
SAXSEnergyFA.hh	RotamerSetBase.fwd.hh
SequenceDependentRefEnergy.cc	Residue.hh
SmoothCenPairEnergy.cc	Residue.hh
SmoothEnvEnergy.cc	Residue.hh
SmoothEnvEnergy.cc	symmetry / SymmetricConformation.hh
SmoothEnvEnergy.cc	symmetry / SymmetryInfo.fwd.hh
SmoothEnvEnergy.cc	symmetry / SymmetryInfo.hh
SplitUnfoldedTwoBodyEnergy.cc	Residue.hh
SplitUnfoldedTwoBodyEnergyCreator.cc	Residue.hh
SSElementMotifContactEnergy.cc	symmetry / SymmetricConformation.hh
SSElementMotifContactEnergy.cc	symmetry / SymmetryInfo.fwd.hh
SSElementMotifContactEnergy.cc	symmetry / SymmetryInfo.hh
StackElecEnergy.cc	Residue.hh
SuckerEnergy.cc	Residue.hh
SugarBackboneEnergy.cc	carbohydrates / GlycanTreeSet.hh
SugarBackboneEnergy.cc	Residue.hh
SugarBackboneEnergy.cc	carbohydrates / util.hh
SugarBackboneEnergy.cc	util.hh
SugarBackboneEnergy.hh	Residue.fwd.hh
SymmetricLigandEnergy.cc	Residue.hh
TNA_SuiteEnergy.cc	Conformation.hh
TNA_SuiteEnergy.cc	Residue.hh
TNA_SuiteEnergy.cc	symmetry / SymmetryInfo.hh
UnfoldedStateEnergy.cc	Residue.hh
VdWTinkerEnergy.cc	RotamerSetBase.hh
VdWTinkerEnergy.cc	RotamerSetCacheableDataType.hh
WaterAdductHBondEnergy.hh	Residue.fwd.hh
WaterAdductIntraEnergy.cc	Residue.hh
WaterSpecificEnergy.cc	Residue.hh
XtalMLEnergy.cc	Residue.hh
YHHPlanarityEnergy.cc	Residue.hh
YHHPlanarityEnergy.hh	Residue.fwd.hh