frag_picker → core Relation

File in src/protocols/frag_picker	Includes file in src/core
quota / ABEGO_SS_Config.cc	types.hh
quota / ABEGO_SS_Config.hh	types.hh
quota / ABEGO_SS_Map.cc	types.hh
quota / ABEGO_SS_Map.hh	types.hh
quota / ABEGO_SS_Pool.cc	types.hh
quota / ABEGO_SS_Pool.hh	types.hh
scores / ABEGO_SS_Score.cc	fragment / SecondaryStructure.hh
scores / ABEGO_SS_Score.cc	types.hh
scores / ABEGO_SS_Score.hh	types.hh
scores / AdaptiveScoreHistogram.hh	types.hh
scores / AmbigCSScore.hh	types.hh
scores / AtomBasedConstraintsScore.cc	id / NamedAtomID.hh
scores / AtomBasedConstraintsScore.cc	pose / Pose.hh
scores / AtomBasedConstraintsScore.cc	chemical / ResidueType.hh
scores / AtomPairConstraintsScore.cc	scoring / func / Func.hh
scores / AtomPairConstraintsScore.cc	scoring / func / FuncFactory.hh
scores / AtomPairConstraintsScore.hh	scoring / func / Func.fwd.hh
scores / AtomPairConstraintsScore.hh	scoring / func / Func.hh
scores / AtomPairConstraintsScore.hh	scoring / func / FuncFactory.hh
BestTotalScoreSelector.cc	types.hh
BestTotalScoreSelector.hh	types.hh
scores / BFactor.cc	types.hh
scores / BFactor.hh	types.hh
BoundedCollector.hh	types.hh
scores / CachingScoringMethod.hh	types.hh
CandidatesCollector.hh	types.hh
scores / ConstScore.hh	types.hh
Contact.hh	types.hh
ContactCounts.hh	types.hh
CS2ndShift.cc	io / raw_data / DisulfideFile.hh
CS2ndShift.cc	types.hh
CS2ndShift.hh	types.hh
scores / CSScore.hh	types.hh
CSTalosIO.cc	types.hh
CSTalosIO.hh	types.hh
CustomScoreSelector.cc	types.hh
CustomScoreSelector.hh	types.hh
scores / DihedralConstraintsScore.cc	scoring / func / Func.hh
scores / DihedralConstraintsScore.cc	scoring / func / FuncFactory.hh
scores / DihedralConstraintsScore.cc	scoring / func / PeriodicFunc.hh
scores / DihedralConstraintsScore.hh	scoring / func / FuncFactory.hh
scores / DisulfideDistance.cc	io / raw_data / DisulfideFile.hh
scores / DisulfideDistance.hh	types.hh
scores / DisulfideIdentity.cc	types.hh
scores / DisulfideIdentity.hh	types.hh
DiversifyCrmsdByClustering.cc	id / NamedAtomID.hh
DiversifyCrmsdByClustering.cc	pose / Pose.hh
DiversifyCrmsdByClustering.hh	types.hh
DiversifyCrmsdSelector.cc	id / NamedAtomID.hh
DiversifyCrmsdSelector.cc	pose / Pose.hh
DiversifyCrmsdSelector.hh	types.hh
DiversifyDihedralsSelector.hh	types.hh
Faraggi_SA.hh	types.hh
scores / FourAtomsConstraintData.hh	scoring / func / Func.hh
scores / fragment_scoring_utilities.hh	types.hh
scores / FragmentAllAtomCrmsd.cc	pose / annotated_sequence.hh
scores / FragmentAllAtomCrmsd.cc	chemical / ChemicalManager.hh
scores / FragmentAllAtomCrmsd.cc	import_pose / import_pose.hh
scores / FragmentAllAtomCrmsd.cc	id / NamedAtomID.hh
scores / FragmentAllAtomCrmsd.cc	conformation / Residue.hh
scores / FragmentAllAtomCrmsd.hh	pose / Pose.fwd.hh
scores / FragmentAllAtomCrmsd.hh	types.hh
FragmentCandidate.cc	optimization / AtomTreeMinimizer.hh
FragmentCandidate.cc	chemical / ChemicalManager.fwd.hh
FragmentCandidate.cc	conformation / Conformation.hh
FragmentCandidate.cc	scoring / Energies.hh
FragmentCandidate.cc	pose / extra_pose_info_util.hh
FragmentCandidate.cc	optimization / MinimizerOptions.hh
FragmentCandidate.cc	kinematics / MoveMap.hh
FragmentCandidate.cc	pack / task / PackerTask.hh
FragmentCandidate.cc	scoring / rms_util.hh
FragmentCandidate.cc	scoring / ScoreFunction.hh
FragmentCandidate.cc	scoring / ScoreFunctionFactory.hh
FragmentCandidate.cc	io / silent / SilentStructFactory.hh
FragmentCandidate.cc	util / SwitchResidueTypeSet.hh
FragmentCandidate.cc	pack / task / TaskFactory.hh
FragmentCandidate.cc	types.hh
FragmentCandidate.cc	pose / util.hh
FragmentCandidate.cc	fragment / util.hh
FragmentCandidate.cc	chemical / VariantType.hh
FragmentCandidate.hh	fragment / BBTorsionSRFD.hh
FragmentCandidate.hh	fragment / FragData.hh
FragmentCandidate.hh	io / silent / SilentFileData.hh
FragmentCandidate.hh	types.hh
scores / FragmentChunkCrms.cc	pose / annotated_sequence.hh
scores / FragmentChunkCrms.cc	chemical / ChemicalManager.hh
scores / FragmentChunkCrms.cc	import_pose / import_pose.hh
scores / FragmentChunkCrms.cc	sequence / MatrixScoringScheme.hh
scores / FragmentChunkCrms.cc	id / NamedAtomID.hh
scores / FragmentChunkCrms.cc	sequence / NWAligner.hh
scores / FragmentChunkCrms.cc	pose / Pose.hh
scores / FragmentChunkCrms.cc	conformation / Residue.hh
scores / FragmentChunkCrms.cc	sequence / ScoringScheme.fwd.hh
scores / FragmentChunkCrms.cc	sequence / Sequence.hh
scores / FragmentChunkCrms.cc	sequence / SequenceAlignment.hh
scores / FragmentChunkCrms.cc	id / SequenceMapping.hh
scores / FragmentChunkCrms.cc	sequence / SimpleScoringScheme.hh
scores / FragmentChunkCrms.hh	id / AtomID.hh
scores / FragmentChunkCrms.hh	id / AtomID_Map.hh
scores / FragmentChunkCrms.hh	pose / Pose.fwd.hh
scores / FragmentChunkCrms.hh	sequence / Sequence.fwd.hh
scores / FragmentChunkCrms.hh	types.hh
FragmentComparatorBase.hh	types.hh
scores / FragmentCrmsd.cc	import_pose / import_pose.hh
scores / FragmentCrmsd.cc	id / NamedAtomID.hh
scores / FragmentCrmsd.cc	pose / Pose.hh
scores / FragmentCrmsd.cc	conformation / Residue.hh
scores / FragmentCrmsd.hh	pose / Pose.fwd.hh
scores / FragmentCrmsd.hh	types.hh
scores / FragmentCrmsdResDepth.cc	import_pose / import_pose.hh
scores / FragmentCrmsdResDepth.cc	id / NamedAtomID.hh
scores / FragmentCrmsdResDepth.cc	pose / Pose.hh
scores / FragmentCrmsdResDepth.cc	conformation / Residue.hh
scores / FragmentCrmsdResDepth.hh	pose / Pose.fwd.hh
scores / FragmentCrmsdResDepth.hh	types.hh
scores / FragmentDME.cc	import_pose / import_pose.hh
scores / FragmentDME.cc	id / NamedAtomID.hh
scores / FragmentDME.cc	pose / Pose.hh
scores / FragmentDME.cc	conformation / Residue.hh
scores / FragmentDME.hh	pose / Pose.fwd.hh
scores / FragmentDME.hh	types.hh
FragmentPicker.cc	fragment / ConstantLengthFragSet.hh
FragmentPicker.cc	pose / extra_pose_info_util.hh
FragmentPicker.cc	fragment / FragID.hh
FragmentPicker.cc	import_pose / import_pose.hh
FragmentPicker.cc	scoring / rms_util.hh
FragmentPicker.cc	fragment / SecondaryStructure.hh
FragmentPicker.cc	sequence / SequenceAlignment.hh
FragmentPicker.cc	id / SequenceMapping.hh
FragmentPicker.cc	io / silent / SilentFileData.hh
FragmentPicker.cc	io / silent / SilentFileOptions.hh
FragmentPicker.cc	io / silent / SilentStructFactory.hh
FragmentPicker.cc	fragment / util.hh
FragmentPicker.cc	pose / util.hh
FragmentPicker.cc	sequence / util.hh
FragmentPicker.hh	fragment / ConstantLengthFragSet.fwd.hh
FragmentPicker.hh	fragment / SecondaryStructure.hh
FragmentPicker.hh	sequence / SequenceProfile.hh
FragmentPicker.hh	types.hh
FragmentScoreFilter.cc	scoring / dssp / Dssp.hh
FragmentScoreFilter.cc	pose / Pose.hh
FragmentScoreFilter.cc	conformation / Residue.hh
FragmentScoreFilter.cc	pose / ResidueIndexDescription.hh
FragmentScoreFilter.cc	scoring / ScoreFunction.hh
FragmentScoreFilter.cc	scoring / ScoreFunctionFactory.hh
FragmentScoreFilter.cc	pose / selection.hh
FragmentScoreFilter.cc	pack / task / TaskFactory.hh
FragmentScoreFilter.cc	sequence / util.hh
FragmentScoreFilter.hh	pose / Pose.fwd.hh
FragmentScoreFilter.hh	pose / ResidueIndexDescription.fwd.hh
scores / FragmentScoreMap.hh	types.hh
scores / FragmentScoringMethod.hh	types.hh
FragmentSelectingRule.hh	types.hh
GrabAllCollector.hh	types.hh
scores / GunnCost.cc	id / AtomID.hh
scores / GunnCost.cc	pose / Pose.hh
scores / GunnCost.cc	chemical / ResidueType.hh
scores / GunnCost.cc	scoring / ScoreFunction.fwd.hh
scores / GunnCost.cc	types.hh
scores / GunnCost.hh	pose / Pose.fwd.hh
scores / GunnCost.hh	types.hh
scores / GunnCostScore.cc	import_pose / import_pose.hh
scores / GunnCostScore.hh	pose / Pose.fwd.hh
scores / GunnCostScore.hh	types.hh
scores / HydrophobicityProfileSimilarity.cc	chemical / AA.hh
scores / HydrophobicityProfileSimilarity.cc	types.hh
scores / HydrophobicityProfileSimilarity.hh	sequence / SequenceProfile.hh
scores / HydrophobicityProfileSimilarity.hh	types.hh
scores / HydrophobicitySimilarity.cc	types.hh
scores / HydrophobicitySimilarity.hh	types.hh
scores / InterbondAngleScore.cc	scoring / func / Func.hh
scores / InterbondAngleScore.cc	scoring / func / FuncFactory.hh
scores / InterbondAngleScore.cc	scoring / func / MinMultiHarmonicFunc.hh
scores / InterbondAngleScore.hh	scoring / func / FuncFactory.hh
scores / JCoupling.hh	types.hh
JCouplingIO.cc	types.hh
JCouplingIO.hh	types.hh
LAMBEGO_IO.cc	types.hh
LAMBEGO_IO.hh	types.hh
scores / LAMBEGO_Similarity.cc	types.hh
scores / LAMBEGO_Similarity.hh	types.hh
LazySortedVector1.hh	types.hh
scores / MidPhiOut.hh	types.hh
scores / MidPsiOut.hh	types.hh
nonlocal / NonlocalFrags.cc	conformation / Conformation.hh
nonlocal / NonlocalFrags.cc	scoring / Energies.hh
nonlocal / NonlocalFrags.cc	pose / extra_pose_info_util.hh
nonlocal / NonlocalFrags.cc	kinematics / FoldTree.hh
nonlocal / NonlocalFrags.cc	kinematics / MoveMap.hh
nonlocal / NonlocalFrags.cc	pose / PDBInfo.hh
nonlocal / NonlocalFrags.cc	pose / Pose.hh
nonlocal / NonlocalFrags.cc	conformation / Residue.hh
nonlocal / NonlocalFrags.cc	scoring / rms_util.hh
nonlocal / NonlocalFrags.cc	scoring / ScoreFunction.hh
nonlocal / NonlocalFrags.cc	scoring / ScoreFunctionFactory.hh
nonlocal / NonlocalFrags.cc	pose / subpose_manipulation_util.hh
nonlocal / NonlocalFrags.cc	pose / util.hh
nonlocal / NonlocalFrags.hh	pose / Pose.fwd.hh
nonlocal / NonlocalPair.hh	types.hh
scores / PartialSecondarySimilarity.cc	fragment / SecondaryStructure.hh
scores / PartialSecondarySimilarity.cc	types.hh
scores / PartialSecondarySimilarity.hh	fragment / SecondaryStructure.hh
scores / PartialSecondarySimilarity.hh	types.hh
scores / PCS_FragDistance.hh	types.hh
PdbIdChunkFilter.hh	types.hh
scores / Phi.cc	types.hh
scores / Phi.hh	types.hh
scores / PhiPsiRmsd.cc	import_pose / import_pose.hh
scores / PhiPsiRmsd.cc	pose / Pose.hh
scores / PhiPsiRmsd.hh	types.hh
scores / PhiPsiSquareWell.cc	import_pose / import_pose.hh
scores / PhiPsiSquareWell.cc	pose / Pose.hh
scores / PhiPsiSquareWell.hh	types.hh
PhiPsiTalosIO.cc	types.hh
PhiPsiTalosIO.hh	types.hh
scores / ProfileScore.cc	sequence / ScoringScheme.hh
scores / ProfileScore.cc	sequence / ScoringSchemeFactory.hh
scores / ProfileScore.cc	sequence / SequenceProfile.hh
scores / ProfileScore.cc	types.hh
scores / ProfileScore.hh	sequence / ScoringScheme.hh
scores / ProfileScore.hh	sequence / SequenceProfile.hh
scores / ProfileScore.hh	types.hh
scores / ProfileScoreBlosum62.cc	chemical / AA.hh
scores / ProfileScoreBlosum62.cc	sequence / MatrixScoringScheme.hh
scores / ProfileScoreBlosum62.cc	sequence / SequenceProfile.hh
scores / ProfileScoreBlosum62.cc	types.hh
scores / ProfileScoreBlosum62.hh	types.hh
scores / ProfileScoreDistWeight.cc	sequence / SequenceProfile.hh
scores / ProfileScoreDistWeight.cc	types.hh
scores / ProfileScoreDistWeight.hh	fragment / SecondaryStructure.hh
scores / ProfileScoreDistWeight.hh	sequence / SequenceProfile.hh
scores / ProfileScoreDistWeight.hh	types.hh
scores / ProfileScoreL1.cc	sequence / SequenceProfile.hh
scores / ProfileScoreL1.cc	types.hh
scores / ProfileScoreL1.hh	types.hh
scores / ProfileScoreStructL1.cc	sequence / SequenceProfile.hh
scores / ProfileScoreStructL1.cc	types.hh
scores / ProfileScoreStructL1.hh	sequence / SequenceProfile.hh
scores / ProfileScoreStructL1.hh	types.hh
scores / ProfileScoreSubMatrix.cc	chemical / AA.hh
scores / ProfileScoreSubMatrix.cc	sequence / MatrixScoringScheme.hh
scores / ProfileScoreSubMatrix.cc	sequence / SequenceProfile.hh
scores / ProfileScoreSubMatrix.cc	types.hh
scores / ProfileScoreSubMatrix.hh	types.hh
scores / ProlinePhiScore.cc	types.hh
scores / ProlinePhiScore.hh	types.hh
scores / Psi.cc	types.hh
scores / Psi.hh	types.hh
quota / QuotaCollector.cc	fragment / SecondaryStructure.hh
quota / QuotaCollector.hh	fragment / SecondaryStructure.fwd.hh
quota / QuotaConfig.cc	types.hh
quota / QuotaConfig.hh	types.hh
quota / QuotaPool.hh	types.hh
quota / QuotaSelector.cc	types.hh
quota / QuotaSelector.hh	types.hh
scores / RamaScore.cc	fragment / SecondaryStructure.fwd.hh
scores / RamaScore.cc	types.hh
scores / RamaScore.hh	fragment / SecondaryStructure.fwd.hh
scores / RamaScore.hh	types.hh
scores / RDCScore.cc	pose / annotated_sequence.hh
scores / RDCScore.cc	chemical / ChemicalManager.hh
scores / RDCScore.cc	kinematics / Jump.hh
scores / RDCScore.cc	pose / Pose.hh
scores / RDCScore.cc	scoring / ResidualDipolarCoupling.hh
scores / RDCScore.hh	scoring / ResidualDipolarCoupling.hh
scores / RDCScore.hh	types.hh
scores / ScoreEValuator.cc	sequence / ScoringScheme.hh
scores / ScoreEValuator.cc	sequence / ScoringSchemeFactory.hh
scores / ScoreEValuator.cc	sequence / SequenceProfile.hh
scores / ScoreEValuator.cc	types.hh
scores / ScoreEValuator.hh	types.hh
scores / SecondaryIdentity.cc	types.hh
scores / SecondaryIdentity.hh	types.hh
scores / SecondarySimilarity.cc	fragment / SecondaryStructure.hh
scores / SecondarySimilarity.cc	types.hh
scores / SecondarySimilarity.hh	fragment / SecondaryStructure.hh
scores / SecondarySimilarity.hh	types.hh
quota / SecondaryStructurePool.cc	types.hh
quota / SecondaryStructurePool.hh	types.hh
scores / SequenceIdentity.cc	types.hh
scores / SequenceIdentity.hh	types.hh
SidechainContactDistCutoff.cc	chemical / AA.hh
SidechainContactDistCutoff.cc	types.hh
SidechainContactDistCutoff.hh	types.hh
scores / SolventAccessibility.cc	types.hh
scores / SolventAccessibility.hh	types.hh
scores / TalosSSSimilarity.cc	fragment / SecondaryStructure.hh
scores / TalosSSSimilarity.cc	types.hh
scores / TalosSSSimilarity.hh	fragment / SecondaryStructure.hh
scores / TalosSSSimilarity.hh	types.hh
TorsionBinIO.cc	types.hh
TorsionBinIO.hh	types.hh
scores / TorsionBinSimilarity.cc	types.hh
scores / TorsionBinSimilarity.hh	types.hh
VallChunk.cc	pose / Pose.hh
VallChunk.cc	sequence / SequenceProfile.hh
VallChunk.hh	pose / Pose.fwd.hh
VallChunk.hh	sequence / SequenceProfile.fwd.hh
VallProvider.cc	pose / annotated_sequence.hh
VallProvider.cc	chemical / ChemicalManager.hh
VallProvider.cc	pose / Pose.hh
VallProvider.cc	sequence / SequenceProfile.hh
VallProvider.cc	types.hh
VallProvider.hh	pose / Pose.hh
VallProvider.hh	sequence / SequenceProfile.hh
VallProvider.hh	types.hh
VallResidue.cc	chemical / AA.hh
VallResidue.cc	fragment / BBTorsionSRFD.hh
VallResidue.hh	chemical / AA.hh
VallResidue.hh	fragment / BBTorsionSRFD.fwd.hh
VallResidue.hh	types.hh