sewing → core Relation

File in src/protocols/sewing	Includes file in src/core
hashing / AlignmentFileGeneratorMover.cc	id / AtomID.hh
hashing / AlignmentFileGeneratorMover.cc	chemical / AtomType.hh
hashing / AlignmentFileGeneratorMover.cc	chemical / AtomTypeSet.hh
hashing / AlignmentFileGeneratorMover.cc	select / residue_selector / BondedResidueSelector.hh
hashing / AlignmentFileGeneratorMover.cc	chemical / ChemicalManager.hh
hashing / AlignmentFileGeneratorMover.cc	conformation / Conformation.hh
hashing / AlignmentFileGeneratorMover.cc	scoring / dssp / Dssp.hh
hashing / AlignmentFileGeneratorMover.cc	import_pose / import_pose.hh
hashing / AlignmentFileGeneratorMover.cc	util / metalloproteins_util.hh
hashing / AlignmentFileGeneratorMover.cc	pose / PDBInfo.hh
hashing / AlignmentFileGeneratorMover.cc	pose / Pose.hh
hashing / AlignmentFileGeneratorMover.cc	conformation / Residue.hh
hashing / AlignmentFileGeneratorMover.cc	select / residue_selector / ResidueSelector.hh
hashing / AlignmentFileGeneratorMover.cc	pose / selection.hh
hashing / AlignmentFileGeneratorMover.cc	pose / subpose_manipulation_util.hh
hashing / AlignmentFileGeneratorMover.cc	select / residue_selector / util.hh
hashing / AlignmentFileGeneratorMover.hh	pose / Pose.fwd.hh
hashing / AlignmentFileGeneratorMover.hh	conformation / Residue.fwd.hh
hashing / AlignmentFileGeneratorMover.hh	select / residue_selector / ResidueSelector.fwd.hh
movers / AppendAssemblyMover.cc	import_pose / import_pose.hh
movers / AppendAssemblyMover.cc	pose / Pose.hh
movers / AppendAssemblyMover.cc	select / residue_selector / ResidueSelector.hh
movers / AppendAssemblyMover.cc	pose / selection.hh
movers / AppendAssemblyMover.cc	select / residue_selector / util.hh
movers / AppendAssemblyMover.hh	pose / Pose.fwd.hh
movers / AppendAssemblyMover.hh	select / residue_selector / ResidueSelector.fwd.hh
movers / AssemblyMover.cc	pose / extra_pose_info_util.hh
movers / AssemblyMover.cc	pose / Pose.hh
movers / AssemblyMover.hh	pose / Pose.fwd.hh
movers / AssemblyMover.hh	pose / Pose.hh
requirements / AssemblyRequirement.hh	pose / Pose.fwd.hh
requirements / AssemblyRequirementFactory.hh	pose / Pose.fwd.hh
scoring / AssemblyScorer.hh	pose / Pose.fwd.hh
scoring / AssemblyScorer.hh	types.hh
scoring / AssemblyScorerFactory.hh	pose / Pose.fwd.hh
data_storage / Basis.hh	types.hh
hashing / BasisMapGenerator.cc	pose / PDBInfo.hh
hashing / BasisMapGenerator.cc	pose / Pose.hh
requirements / ClashRequirement.cc	conformation / Atom.hh
requirements / ClashRequirement.hh	conformation / Residue.hh
requirements / ClashRequirement.hh	types.hh
requirements / DsspSpecificLengthRequirement.hh	types.hh
hashing / EdgeMapGenerator.hh	types.hh
hashing / Hasher.cc	conformation / Atom.hh
hashing / Hasher.cc	id / AtomID.hh
hashing / Hasher.hh	conformation / Atom.hh
hashing / Hasher.hh	types.hh
hashing / hasher_data.hh	id / AtomID.hh
hashing / hasher_data.hh	types.hh
scoring / InterModelMotifScorer.cc	chemical / ChemicalManager.hh
scoring / InterModelMotifScorer.cc	scoring / dssp / Dssp.hh
scoring / InterModelMotifScorer.cc	pose / motif / reference_frames.hh
scoring / InterModelMotifScorer.cc	types.hh
scoring / InterModelMotifScorer.cc	scoring / motif / util.hh
scoring / InterModelMotifScorer.hh	scoring / motif / motif_hash_stuff.hh
scoring / InterModelMotifScorer.hh	chemical / ResidueTypeSet.hh
scoring / IntraDesignTerminusMotifScorer.cc	conformation / Atom.hh
scoring / IntraDesignTerminusMotifScorer.cc	id / AtomID.hh
scoring / IntraDesignTerminusMotifScorer.cc	chemical / ChemicalManager.hh
scoring / IntraDesignTerminusMotifScorer.cc	scoring / dssp / Dssp.hh
scoring / IntraDesignTerminusMotifScorer.cc	pose / Pose.hh
scoring / IntraDesignTerminusMotifScorer.cc	pose / motif / reference_frames.hh
scoring / IntraDesignTerminusMotifScorer.cc	types.hh
scoring / IntraDesignTerminusMotifScorer.cc	scoring / motif / util.hh
scoring / IntraDesignTerminusMotifScorer.hh	scoring / motif / motif_hash_stuff.hh
scoring / IntraDesignTerminusMotifScorer.hh	chemical / ResidueTypeSet.hh
requirements / KeepLigandContactsRequirement.cc	conformation / Atom.hh
requirements / KeepLigandContactsRequirement.hh	conformation / Residue.hh
requirements / KeepLigandContactsRequirement.hh	types.hh
requirements / LengthInResiduesRequirement.hh	types.hh
requirements / LigandAssemblyRequirement.hh	pose / Pose.fwd.hh
scoring / LigandAssemblyScorer.hh	pose / Pose.fwd.hh
scoring / LigandAssemblyScorer.hh	types.hh
movers / LigandBindingAssemblyMover.cc	pose / extra_pose_info_util.hh
movers / LigandBindingAssemblyMover.cc	import_pose / import_pose.hh
movers / LigandBindingAssemblyMover.cc	pose / Pose.hh
movers / LigandBindingAssemblyMover.cc	select / residue_selector / ResidueSelector.hh
movers / LigandBindingAssemblyMover.cc	pose / selection.hh
movers / LigandBindingAssemblyMover.cc	select / residue_selector / util.hh
movers / LigandBindingAssemblyMover.hh	pose / Pose.fwd.hh
hashing / LigandBindingResPlacer.cc	chemical / AtomType.hh
hashing / LigandBindingResPlacer.cc	chemical / AtomTypeSet.hh
hashing / LigandBindingResPlacer.cc	chemical / ChemicalManager.hh
hashing / LigandBindingResPlacer.cc	conformation / Residue.hh
hashing / LigandBindingResPlacer.cc	chemical / ResidueType.hh
hashing / LigandBindingResPlacer.cc	chemical / ResidueTypeSet.hh
hashing / LigandBindingResPlacer.cc	kinematics / Stub.hh
hashing / LigandBindingResPlacer.hh	chemical / AtomTypeSet.fwd.hh
hashing / LigandBindingResPlacer.hh	conformation / Residue.fwd.hh
hashing / LigandBindingResPlacer.hh	types.hh
requirements / LigandClashRequirement.cc	conformation / Atom.hh
requirements / LigandClashRequirement.cc	chemical / AtomType.hh
requirements / LigandClashRequirement.cc	chemical / AtomTypeSet.hh
requirements / LigandClashRequirement.cc	chemical / ChemicalManager.hh
requirements / LigandClashRequirement.hh	chemical / AtomTypeSet.fwd.hh
requirements / LigandClashRequirement.hh	conformation / Residue.fwd.hh
requirements / LigandClashRequirement.hh	types.hh
data_storage / LigandResidue.cc	conformation / Atom.hh
data_storage / LigandResidue.hh	conformation / Residue.fwd.hh
data_storage / LigandResidue.hh	select / residue_selector / ResidueSelector.hh
scoring / LigandScorer.cc	scoring / func / AmberPeriodicFunc.hh
scoring / LigandScorer.cc	chemical / AtomType.hh
scoring / LigandScorer.cc	chemical / ChemicalManager.hh
scoring / LigandScorer.cc	scoring / dssp / Dssp.hh
scoring / LigandScorer.cc	scoring / func / Func.hh
scoring / LigandScorer.cc	types.hh
scoring / LigandScorer.hh	chemical / AtomTypeSet.hh
scoring / LigandScorer.hh	scoring / func / Func.fwd.hh
hashing / ModelFileReader.cc	conformation / Atom.hh
hashing / ModelFileReader.hh	conformation / Atom.hh
scoring / MotifScorer.cc	chemical / ChemicalManager.hh
scoring / MotifScorer.cc	scoring / dssp / Dssp.hh
scoring / MotifScorer.cc	pose / motif / reference_frames.hh
scoring / MotifScorer.cc	types.hh
scoring / MotifScorer.cc	scoring / motif / util.hh
scoring / MotifScorer.hh	scoring / motif / motif_hash_stuff.hh
scoring / MotifScorer.hh	chemical / ResidueTypeSet.hh
scoring / MotifScorer.hh	types.hh
requirements / NonTerminalStartingSegmentRequirement.hh	types.hh
scoring / PartnerMotifScorer.cc	chemical / ChemicalManager.hh
scoring / PartnerMotifScorer.cc	scoring / dssp / Dssp.hh
scoring / PartnerMotifScorer.cc	pose / Pose.hh
scoring / PartnerMotifScorer.cc	pose / motif / reference_frames.hh
scoring / PartnerMotifScorer.cc	types.hh
scoring / PartnerMotifScorer.cc	scoring / motif / util.hh
scoring / PartnerMotifScorer.hh	scoring / motif / motif_hash_stuff.hh
scoring / PartnerMotifScorer.hh	chemical / ResidueTypeSet.hh
scoring / SegmentContactOrderScorer.cc	chemical / ChemicalManager.hh
scoring / SegmentContactOrderScorer.cc	scoring / dssp / Dssp.hh
scoring / SegmentContactOrderScorer.cc	pose / motif / reference_frames.hh
scoring / SegmentContactOrderScorer.cc	types.hh
scoring / SegmentContactOrderScorer.cc	scoring / motif / util.hh
scoring / SegmentContactOrderScorer.hh	types.hh
requirements / SizeInSegmentsRequirement.hh	types.hh
data_storage / SmartAssembly.cc	chemical / AA.hh
data_storage / SmartAssembly.cc	pose / annotated_sequence.hh
data_storage / SmartAssembly.cc	chemical / AtomType.hh
data_storage / SmartAssembly.cc	chemical / ChemicalManager.hh
data_storage / SmartAssembly.cc	conformation / Conformation.hh
data_storage / SmartAssembly.cc	kinematics / FoldTree.hh
data_storage / SmartAssembly.cc	pose / PDBInfo.hh
data_storage / SmartAssembly.cc	io / Remarks.hh
data_storage / SmartAssembly.cc	conformation / Residue.functions.hh
data_storage / SmartAssembly.cc	conformation / Residue.hh
data_storage / SmartAssembly.cc	conformation / ResidueFactory.hh
data_storage / SmartAssembly.cc	chemical / ResidueType.hh
data_storage / SmartAssembly.cc	chemical / ResidueTypeSet.hh
data_storage / SmartAssembly.cc	kinematics / RT.hh
data_storage / SmartAssembly.cc	kinematics / Stub.hh
data_storage / SmartAssembly.cc	pose / subpose_manipulation_util.hh
data_storage / SmartAssembly.cc	util / SwitchResidueTypeSet.hh
data_storage / SmartAssembly.cc	chemical / VariantType.hh
data_storage / SmartAssembly.hh	pose / Pose.hh
data_storage / SmartSegment.hh	chemical / Atom.hh
data_storage / SmartSegment.hh	types.hh
data_storage / SmartSewingResidue.hh	conformation / Atom.hh
scoring / StartingNodeMotifScorer.cc	chemical / ChemicalManager.hh
scoring / StartingNodeMotifScorer.cc	scoring / dssp / Dssp.hh
scoring / StartingNodeMotifScorer.cc	pose / motif / reference_frames.hh
scoring / StartingNodeMotifScorer.cc	types.hh
scoring / StartingNodeMotifScorer.cc	scoring / motif / util.hh
scoring / StartingNodeMotifScorer.hh	scoring / motif / motif_hash_stuff.hh
scoring / StartingNodeMotifScorer.hh	chemical / ResidueTypeSet.hh
scoring / SubsetPartnerMotifScorer.cc	chemical / ChemicalManager.hh
scoring / SubsetPartnerMotifScorer.cc	scoring / dssp / Dssp.hh
scoring / SubsetPartnerMotifScorer.cc	pose / Pose.hh
scoring / SubsetPartnerMotifScorer.cc	pose / motif / reference_frames.hh
scoring / SubsetPartnerMotifScorer.cc	types.hh
scoring / SubsetPartnerMotifScorer.cc	scoring / motif / util.hh
scoring / SubsetPartnerMotifScorer.hh	scoring / motif / motif_hash_stuff.hh
scoring / SubsetPartnerMotifScorer.hh	chemical / ResidueTypeSet.hh
scoring / TerminusMotifScorer.cc	conformation / Atom.hh
scoring / TerminusMotifScorer.cc	id / AtomID.hh
scoring / TerminusMotifScorer.cc	chemical / ChemicalManager.hh
scoring / TerminusMotifScorer.cc	scoring / dssp / Dssp.hh
scoring / TerminusMotifScorer.cc	pose / Pose.hh
scoring / TerminusMotifScorer.cc	pose / motif / reference_frames.hh
scoring / TerminusMotifScorer.cc	types.hh
scoring / TerminusMotifScorer.cc	scoring / motif / util.hh
scoring / TerminusMotifScorer.hh	scoring / motif / motif_hash_stuff.hh
scoring / TerminusMotifScorer.hh	chemical / ResidueTypeSet.hh
scoring / TopNMotifScorer.cc	chemical / ChemicalManager.hh
scoring / TopNMotifScorer.cc	scoring / dssp / Dssp.hh
scoring / TopNMotifScorer.cc	pose / motif / reference_frames.hh
scoring / TopNMotifScorer.cc	types.hh
scoring / TopNMotifScorer.cc	scoring / motif / util.hh