scoring → core Relation

File in src/protocols/scoring	Includes file in src/core
methods / EnsembleEnergy.cc	pose / datacache / CacheableDataType.hh
methods / EnsembleEnergy.cc	scoring / EnergyMap.hh
methods / EnsembleEnergy.cc	pose / Pose.hh
methods / EnsembleEnergy.hh	pose / Pose.fwd.hh
methods / EnsembleEnergy.hh	scoring / ScoreFunction.fwd.hh
methods / EnsembleEnergy.hh	scoring / methods / WholeStructureEnergy.hh
methods / EnsembleEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
methods / EnsembleEnergyCreator.hh	types.hh
methods / pcsTs4 / GridSearchIterator.hh	types.hh
methods / pcsTs3 / GridSearchIterator.hh	types.hh
methods / pcsTs2 / GridSearchIterator.hh	types.hh
methods / pcsTs1 / GridSearchIterator.hh	types.hh
methods / pcs / GridSearchIterator.hh	types.hh
methods / pcs2 / GridSearchIteratorCA.cc	pose / Pose.hh
methods / pcs2 / GridSearchIteratorCA.cc	conformation / Residue.hh
methods / pcs2 / GridSearchIteratorCA.hh	pose / Pose.fwd.hh
methods / pcs2 / GridSearchIteratorCA.hh	types.hh
ImplicitFastClashCheck.cc	id / AtomID.hh
ImplicitFastClashCheck.cc	pose / Pose.hh
ImplicitFastClashCheck.cc	conformation / Residue.hh
ImplicitFastClashCheck.cc	kinematics / Stub.hh
ImplicitFastClashCheck.hh	pose / Pose.fwd.hh
ImplicitFastClashCheck.hh	kinematics / Stub.fwd.hh
ImplicitFastClashCheck.hh	types.hh
methods / InterchainEnvEnergy.cc	scoring / EnergyMap.hh
methods / InterchainEnvEnergy.cc	scoring / EnvPairPotential.hh
methods / InterchainEnvEnergy.cc	pose / Pose.hh
methods / InterchainEnvEnergy.cc	scoring / ScoringManager.hh
methods / InterchainEnvEnergy.hh	scoring / methods / ContextDependentOneBodyEnergy.hh
methods / InterchainEnvEnergy.hh	scoring / EnvPairPotential.fwd.hh
methods / InterchainEnvEnergy.hh	pose / Pose.fwd.hh
methods / InterchainEnvEnergy.hh	conformation / Residue.fwd.hh
methods / InterchainEnvEnergy.hh	scoring / ScoreFunction.fwd.hh
methods / InterchainEnvEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
methods / InterchainEnvEnergyCreator.hh	types.hh
methods / InterchainPairEnergy.cc	scoring / EnergyMap.hh
methods / InterchainPairEnergy.cc	scoring / EnvPairPotential.hh
methods / InterchainPairEnergy.cc	pose / Pose.hh
methods / InterchainPairEnergy.cc	scoring / ScoringManager.hh
methods / InterchainPairEnergy.hh	scoring / methods / ContextIndependentTwoBodyEnergy.hh
methods / InterchainPairEnergy.hh	scoring / EnvPairPotential.fwd.hh
methods / InterchainPairEnergy.hh	pose / Pose.fwd.hh
methods / InterchainPairEnergy.hh	conformation / Residue.fwd.hh
methods / InterchainPairEnergy.hh	scoring / ScoreFunction.fwd.hh
methods / InterchainPairEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
InterchainPotential.cc	chemical / AA.hh
InterchainPotential.cc	conformation / Atom.hh
InterchainPotential.cc	scoring / AtomVDW.hh
InterchainPotential.cc	pose / datacache / CacheableDataType.hh
InterchainPotential.cc	chemical / ChemicalManager.fwd.hh
InterchainPotential.cc	scoring / EnvPairPotential.hh
InterchainPotential.cc	pose / Pose.hh
InterchainPotential.cc	conformation / Residue.hh
InterchainPotential.cc	scoring / ScoringManager.hh
InterchainPotential.hh	scoring / AtomVDW.fwd.hh
InterchainPotential.hh	pose / Pose.fwd.hh
InterchainPotential.hh	conformation / Residue.fwd.hh
InterchainPotential.hh	types.hh
Interface.cc	scoring / EnergyGraph.hh
Interface.cc	kinematics / FoldTree.hh
Interface.cc	pack / task / PackerTask.hh
Interface.cc	pose / Pose.hh
Interface.cc	conformation / Residue.hh
Interface.cc	conformation / symmetry / SymmetricConformation.hh
Interface.cc	scoring / symmetry / SymmetricEnergies.fwd.hh
Interface.cc	scoring / symmetry / SymmetricEnergies.hh
Interface.cc	conformation / symmetry / SymmetryInfo.hh
Interface.cc	pose / symmetry / util.hh
Interface.hh	pack / task / PackerTask.fwd.hh
Interface.hh	pose / Pose.fwd.hh
Interface.hh	conformation / Residue.fwd.hh
Interface.hh	types.hh
InterfaceInfo.cc	chemical / AA.hh
InterfaceInfo.cc	scoring / EnvPairPotential.hh
InterfaceInfo.cc	conformation / Residue.hh
InterfaceInfo.hh	conformation / Residue.fwd.hh
InterfaceInfo.hh	types.hh
methods / pcs2 / PcsDataCenter.cc	pose / Pose.hh
methods / pcs2 / PcsDataCenter.cc	conformation / Residue.hh
methods / pcs2 / PcsDataCenter.hh	pose / Pose.fwd.hh
methods / pcs2 / PcsDataCenter.hh	types.hh
methods / pcs2 / PcsDataCenterManager.hh	types.hh
methods / pcs2 / PcsDataCenterManagerSingleton.hh	types.hh
methods / pcs2 / PcsDataLanthanide.hh	types.hh
methods / pcs2 / PcsEnergy.cc	pose / datacache / CacheableDataType.hh
methods / pcs2 / PcsEnergy.cc	scoring / EnergyMap.hh
methods / pcs2 / PcsEnergy.cc	optimization / Minimizer.hh
methods / pcs2 / PcsEnergy.cc	pose / Pose.hh
methods / pcs2 / PcsEnergy.cc	conformation / Residue.hh
methods / pcs2 / PcsEnergy.hh	optimization / Minimizer.fwd.hh
methods / pcs2 / PcsEnergy.hh	scoring / methods / WholeStructureEnergy.hh
methods / pcs2 / PcsEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
methods / pcs2 / PcsEnergyParameter.hh	types.hh
methods / pcs2 / PcsGridSearchParameter.hh	types.hh
methods / pcs2 / PcsGridSearchParameterManager.hh	types.hh
methods / pcs2 / PcsInputCenter.hh	types.hh
methods / pcs2 / PcsInputCenterManager.hh	types.hh
methods / pcs2 / PcsInputLine.hh	types.hh
methods / pcs2 / PcsTensor.hh	types.hh
methods / saxs / PDDFEnergy.cc	chemical / AtomType.hh
methods / saxs / PDDFEnergy.cc	chemical / ChemicalManager.hh
methods / saxs / PDDFEnergy.cc	scoring / EnergyMap.hh
methods / saxs / PDDFEnergy.cc	scoring / saxs / FormFactor.hh
methods / saxs / PDDFEnergy.cc	scoring / saxs / FormFactorManager.hh
methods / saxs / PDDFEnergy.cc	import_pose / import_pose.hh
methods / saxs / PDDFEnergy.cc	kinematics / Jump.hh
methods / saxs / PDDFEnergy.cc	pose / Pose.hh
methods / saxs / PDDFEnergy.cc	conformation / Residue.hh
methods / saxs / PDDFEnergy.cc	util / SwitchResidueTypeSet.hh
methods / saxs / PDDFEnergy.cc	scoring / methods / WholeStructureEnergy.hh
methods / saxs / PDDFEnergy.hh	scoring / methods / EnergyMethodOptions.fwd.hh
methods / saxs / PDDFEnergy.hh	scoring / saxs / FormFactorManager.fwd.hh
methods / saxs / PDDFEnergy.hh	pose / Pose.fwd.hh
methods / saxs / PDDFEnergy.hh	scoring / ScoreFunction.fwd.hh
methods / saxs / PDDFEnergy.hh	scoring / ScoreType.hh
methods / saxs / PDDFEnergy.hh	scoring / methods / WholeStructureEnergy.hh
methods / saxs / PDDFEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
methods / pcsTs4 / PseudocontactShiftData.cc	pose / Pose.hh
methods / pcsTs3 / PseudocontactShiftData.cc	pose / Pose.hh
methods / pcsTs2 / PseudocontactShiftData.cc	pose / Pose.hh
methods / pcsTs1 / PseudocontactShiftData.cc	pose / Pose.hh
methods / pcs / PseudocontactShiftData.cc	pose / Pose.hh
methods / pcsTs4 / PseudocontactShiftData.cc	conformation / Residue.hh
methods / pcsTs3 / PseudocontactShiftData.cc	conformation / Residue.hh
methods / pcsTs2 / PseudocontactShiftData.cc	conformation / Residue.hh
methods / pcsTs1 / PseudocontactShiftData.cc	conformation / Residue.hh
methods / pcs / PseudocontactShiftData.cc	conformation / Residue.hh
methods / pcsTs4 / PseudocontactShiftData.hh	pose / Pose.fwd.hh
methods / pcsTs3 / PseudocontactShiftData.hh	pose / Pose.fwd.hh
methods / pcsTs2 / PseudocontactShiftData.hh	pose / Pose.fwd.hh
methods / pcsTs1 / PseudocontactShiftData.hh	pose / Pose.fwd.hh
methods / pcs / PseudocontactShiftData.hh	pose / Pose.fwd.hh
methods / pcsTs4 / PseudocontactShiftData.hh	types.hh
methods / pcsTs3 / PseudocontactShiftData.hh	types.hh
methods / pcsTs2 / PseudocontactShiftData.hh	types.hh
methods / pcsTs1 / PseudocontactShiftData.hh	types.hh
methods / pcs / PseudocontactShiftData.hh	types.hh
methods / pcsTs4 / PseudocontactShiftEnergy.cc	pose / datacache / CacheableDataType.hh
methods / pcsTs3 / PseudocontactShiftEnergy.cc	pose / datacache / CacheableDataType.hh
methods / pcsTs2 / PseudocontactShiftEnergy.cc	pose / datacache / CacheableDataType.hh
methods / pcsTs1 / PseudocontactShiftEnergy.cc	pose / datacache / CacheableDataType.hh
methods / pcs / PseudocontactShiftEnergy.cc	pose / datacache / CacheableDataType.hh
methods / pcsTs4 / PseudocontactShiftEnergy.cc	scoring / EnergyMap.hh
methods / pcsTs3 / PseudocontactShiftEnergy.cc	scoring / EnergyMap.hh
methods / pcsTs2 / PseudocontactShiftEnergy.cc	scoring / EnergyMap.hh
methods / pcsTs1 / PseudocontactShiftEnergy.cc	scoring / EnergyMap.hh
methods / pcs / PseudocontactShiftEnergy.cc	scoring / EnergyMap.hh
methods / pcsTs4 / PseudocontactShiftEnergy.cc	optimization / Minimizer.hh
methods / pcsTs3 / PseudocontactShiftEnergy.cc	optimization / Minimizer.hh
methods / pcsTs2 / PseudocontactShiftEnergy.cc	optimization / Minimizer.hh
methods / pcsTs1 / PseudocontactShiftEnergy.cc	optimization / Minimizer.hh
methods / pcs / PseudocontactShiftEnergy.cc	optimization / Minimizer.hh
methods / pcsTs4 / PseudocontactShiftEnergy.cc	optimization / MinimizerOptions.hh
methods / pcsTs3 / PseudocontactShiftEnergy.cc	optimization / MinimizerOptions.hh
methods / pcsTs2 / PseudocontactShiftEnergy.cc	optimization / MinimizerOptions.hh
methods / pcsTs1 / PseudocontactShiftEnergy.cc	optimization / MinimizerOptions.hh
methods / pcs / PseudocontactShiftEnergy.cc	optimization / MinimizerOptions.hh
methods / pcsTs4 / PseudocontactShiftEnergy.cc	pose / Pose.hh
methods / pcsTs3 / PseudocontactShiftEnergy.cc	pose / Pose.hh
methods / pcsTs2 / PseudocontactShiftEnergy.cc	pose / Pose.hh
methods / pcsTs1 / PseudocontactShiftEnergy.cc	pose / Pose.hh
methods / pcs / PseudocontactShiftEnergy.cc	pose / Pose.hh
methods / pcsTs4 / PseudocontactShiftEnergy.cc	conformation / Residue.hh
methods / pcsTs3 / PseudocontactShiftEnergy.cc	conformation / Residue.hh
methods / pcsTs2 / PseudocontactShiftEnergy.cc	conformation / Residue.hh
methods / pcsTs1 / PseudocontactShiftEnergy.cc	conformation / Residue.hh
methods / pcs / PseudocontactShiftEnergy.cc	conformation / Residue.hh
methods / pcsTs4 / PseudocontactShiftEnergy.hh	pose / Pose.fwd.hh
methods / pcsTs3 / PseudocontactShiftEnergy.hh	pose / Pose.fwd.hh
methods / pcsTs2 / PseudocontactShiftEnergy.hh	pose / Pose.fwd.hh
methods / pcsTs1 / PseudocontactShiftEnergy.hh	pose / Pose.fwd.hh
methods / pcs / PseudocontactShiftEnergy.hh	pose / Pose.fwd.hh
methods / pcsTs4 / PseudocontactShiftEnergy.hh	scoring / ScoreType.hh
methods / pcsTs3 / PseudocontactShiftEnergy.hh	scoring / ScoreType.hh
methods / pcsTs2 / PseudocontactShiftEnergy.hh	scoring / ScoreType.hh
methods / pcsTs1 / PseudocontactShiftEnergy.hh	scoring / ScoreType.hh
methods / pcs / PseudocontactShiftEnergy.hh	scoring / ScoreType.hh
methods / pcsTs4 / PseudocontactShiftEnergy.hh	scoring / methods / WholeStructureEnergy.hh
methods / pcsTs3 / PseudocontactShiftEnergy.hh	scoring / methods / WholeStructureEnergy.hh
methods / pcsTs2 / PseudocontactShiftEnergy.hh	scoring / methods / WholeStructureEnergy.hh
methods / pcsTs1 / PseudocontactShiftEnergy.hh	scoring / methods / WholeStructureEnergy.hh
methods / pcs / PseudocontactShiftEnergy.hh	scoring / methods / WholeStructureEnergy.hh
methods / pcsTs4 / PseudocontactShiftEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
methods / pcsTs3 / PseudocontactShiftEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
methods / pcsTs2 / PseudocontactShiftEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
methods / pcsTs1 / PseudocontactShiftEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
methods / pcs / PseudocontactShiftEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
methods / pcsTs4 / PseudocontactShiftInput.hh	types.hh
methods / pcsTs3 / PseudocontactShiftInput.hh	types.hh
methods / pcsTs2 / PseudocontactShiftInput.hh	types.hh
methods / pcsTs1 / PseudocontactShiftInput.hh	types.hh
methods / pcs / PseudocontactShiftInput.hh	types.hh
methods / pcsTs4 / PseudocontactShiftTensor.hh	types.hh
methods / pcsTs3 / PseudocontactShiftTensor.hh	types.hh
methods / pcsTs2 / PseudocontactShiftTensor.hh	types.hh
methods / pcsTs1 / PseudocontactShiftTensor.hh	types.hh
methods / pcs / PseudocontactShiftTensor.hh	types.hh
methods / ResidualDipolarCouplingEnergyRigidSegments.cc	scoring / EnergyMap.hh
methods / ResidualDipolarCouplingEnergyRigidSegments.cc	scoring / ScoreType.hh
methods / ResidualDipolarCouplingEnergyRigidSegments.hh	id / AtomID_Map.hh
methods / ResidualDipolarCouplingEnergyRigidSegments.hh	pose / Pose.fwd.hh
methods / ResidualDipolarCouplingEnergyRigidSegments.hh	scoring / ScoreFunction.fwd.hh
methods / ResidualDipolarCouplingEnergyRigidSegments.hh	scoring / ScoreType.hh
methods / ResidualDipolarCouplingEnergyRigidSegments.hh	scoring / methods / WholeStructureEnergy.hh
methods / ResidualDipolarCouplingEnergyRigidSegmentsCreator.hh	scoring / methods / EnergyMethodCreator.hh
ResidualDipolarCouplingRigidSegments.cc	pose / datacache / CacheableDataType.hh
ResidualDipolarCouplingRigidSegments.cc	pose / Pose.hh
ResidualDipolarCouplingRigidSegments.hh	pose / Pose.fwd.hh
ResidualDipolarCouplingRigidSegments.hh	scoring / ResidualDipolarCoupling.hh
ResidualDipolarCouplingRigidSegments.hh	types.hh
methods / SpecialRotamerEnergy.cc	scoring / methods / ContextIndependentOneBodyEnergy.hh
methods / SpecialRotamerEnergy.cc	scoring / EnergyMap.hh
methods / SpecialRotamerEnergy.cc	conformation / Residue.hh
methods / SpecialRotamerEnergy.hh	scoring / methods / ContextIndependentOneBodyEnergy.hh
methods / SpecialRotamerEnergy.hh	id / DOF_ID.fwd.hh
methods / SpecialRotamerEnergy.hh	pose / Pose.fwd.hh
methods / SpecialRotamerEnergy.hh	scoring / ScoreFunction.fwd.hh
methods / SpecialRotamerEnergy.hh	id / TorsionID.fwd.hh
methods / SpecialRotamerEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
methods / TargetClashEnergy.cc	id / AtomID_Map.hh
methods / TargetClashEnergy.cc	pose / datacache / CacheableDataType.hh
methods / TargetClashEnergy.cc	chemical / ChemicalManager.hh
methods / TargetClashEnergy.cc	scoring / EnergyMap.hh
methods / TargetClashEnergy.cc	import_pose / import_pose.hh
methods / TargetClashEnergy.cc	pose / Pose.hh
methods / TargetClashEnergy.cc	conformation / Residue.hh
methods / TargetClashEnergy.cc	conformation / ResidueFactory.hh
methods / TargetClashEnergy.cc	chemical / ResidueTypeSet.hh
methods / TargetClashEnergy.cc	scoring / ScoringManager.hh
methods / TargetClashEnergy.cc	pose / xyzStripeHashPose.hh
methods / TargetClashEnergy.hh	scoring / methods / EnergyMethod.hh
methods / TargetClashEnergy.hh	scoring / methods / EnergyMethodOptions.hh
methods / TargetClashEnergy.hh	scoring / ScoreFunction.fwd.hh
methods / TargetClashEnergy.hh	scoring / ScoreType.hh
methods / TargetClashEnergy.hh	scoring / methods / WholeStructureEnergy.hh
methods / TargetClashEnergyCreator.hh	scoring / methods / EnergyMethod.fwd.hh
methods / TargetClashEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
methods / TargetClashEnergyCreator.hh	scoring / methods / EnergyMethodOptions.fwd.hh
methods / pcsTs4 / TensorsOptimizer.hh	optimization / Multifunc.hh
methods / pcsTs3 / TensorsOptimizer.hh	optimization / Multifunc.hh
methods / pcsTs2 / TensorsOptimizer.hh	optimization / Multifunc.hh
methods / pcsTs1 / TensorsOptimizer.hh	optimization / Multifunc.hh
methods / pcs2 / TensorsOptimizer.hh	optimization / Multifunc.hh
methods / pcs / TensorsOptimizer.hh	optimization / Multifunc.hh
methods / pcs2 / TensorsOptimizerFix.hh	optimization / Multifunc.hh
methods / pcs2 / TensorsOptimizerSvd.hh	optimization / Multifunc.hh
VDW_CachedRepScreenInfo.cc	pose / datacache / CacheableDataType.hh
VDW_CachedRepScreenInfo.cc	chemical / ChemicalManager.hh
VDW_CachedRepScreenInfo.cc	import_pose / import_pose.hh
VDW_CachedRepScreenInfo.cc	pose / Pose.hh
VDW_CachedRepScreenInfo.cc	chemical / ResidueTypeSet.hh
VDW_CachedRepScreenInfo.cc	chemical / rna / util.hh
VDW_CachedRepScreenInfo.cc	pose / rna / util.hh
VDW_CachedRepScreenInfo.cc	pose / rna / VDW_Grid.hh
VDW_CachedRepScreenInfo.cc	pose / rna / VDW_RepScreenInfo.hh
VDW_CachedRepScreenInfo.hh	pose / datacache / CacheableDataType.hh
VDW_CachedRepScreenInfo.hh	pose / Pose.hh
VDW_CachedRepScreenInfo.hh	pose / rna / VDW_Grid.fwd.hh
VDW_CachedRepScreenInfo.hh	pose / rna / VDW_RepScreenInfo.hh
VDW_GridEnergy.cc	scoring / EnergyMap.hh
VDW_GridEnergy.cc	pose / full_model_info / FullModelInfo.hh
VDW_GridEnergy.cc	conformation / Residue.hh
VDW_GridEnergy.cc	scoring / rms_util.tmpl.hh
VDW_GridEnergy.cc	scoring / ScoreType.hh
VDW_GridEnergy.cc	pose / rna / util.hh
VDW_GridEnergy.cc	pose / full_model_info / util.hh
VDW_GridEnergy.cc	pose / rna / VDW_Grid.hh
VDW_GridEnergy.cc	pose / rna / VDW_RepScreenInfo.hh
VDW_GridEnergy.hh	id / AtomID_Map.hh
VDW_GridEnergy.hh	id / DOF_ID.fwd.hh
VDW_GridEnergy.hh	pose / Pose.fwd.hh
VDW_GridEnergy.hh	scoring / ScoreFunction.fwd.hh
VDW_GridEnergy.hh	pose / rna / VDW_Grid.fwd.hh
VDW_GridEnergy.hh	pose / rna / VDW_RepScreenInfo.fwd.hh
VDW_GridEnergy.hh	scoring / methods / WholeStructureEnergy.hh
VDW_GridEnergyCreator.hh	scoring / methods / EnergyMethod.fwd.hh
VDW_GridEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
VDW_GridEnergyCreator.hh	scoring / methods / EnergyMethodOptions.fwd.hh