match → core Relation

File in src/protocols/match	Includes file in src/core
downstream / ActiveSiteGrid.cc	conformation / Residue.hh
downstream / ActiveSiteGrid.hh	conformation / Residue.fwd.hh
downstream / ActiveSiteGrid.hh	types.hh
BumpGrid.cc	chemical / AtomType.hh
BumpGrid.cc	chemical / AtomTypeSet.hh
BumpGrid.cc	chemical / ChemicalManager.hh
BumpGrid.cc	pose / Pose.hh
BumpGrid.cc	conformation / Residue.hh
BumpGrid.hh	pose / Pose.fwd.hh
BumpGrid.hh	conformation / Residue.fwd.hh
BumpGrid.hh	types.hh
downstream / ClassicMatchAlgorithm.cc	conformation / Residue.hh
downstream / ClassicMatchAlgorithm.cc	chemical / ResidueType.hh
downstream / ClassicMatchAlgorithm.hh	conformation / Residue.fwd.hh
downstream / ClassicMatchAlgorithm.hh	chemical / ResidueType.fwd.hh
downstream / ClassicMatchAlgorithm.hh	types.hh
downstream / DownstreamAlgorithm.cc	id / AtomID.hh
downstream / DownstreamAlgorithm.cc	conformation / Residue.hh
downstream / DownstreamAlgorithm.hh	id / AtomID.fwd.hh
downstream / DownstreamAlgorithm.hh	conformation / Residue.fwd.hh
downstream / DownstreamAlgorithm.hh	types.hh
downstream / DownstreamBuilder.hh	id / AtomID.fwd.hh
downstream / DownstreamBuilder.hh	pose / Pose.fwd.hh
downstream / DownstreamBuilder.hh	conformation / Residue.fwd.hh
downstream / DownstreamBuilder.hh	chemical / ResidueType.fwd.hh
downstream / DownstreamBuilder.hh	types.hh
output / DownstreamRMSEvaluator.cc	id / AtomID.hh
output / DownstreamRMSEvaluator.cc	pose / Pose.hh
output / DownstreamRMSEvaluator.cc	conformation / Residue.hh
output / DownstreamRMSEvaluator.hh	id / AtomID.fwd.hh
output / DownstreamRMSEvaluator.hh	pose / Pose.fwd.hh
downstream / GeometrySecMatchRPE.cc	conformation / Residue.hh
downstream / GeometrySecMatchRPE.hh	conformation / Residue.fwd.hh
downstream / GeometrySecMatchRPE.hh	chemical / ResidueType.fwd.hh
downstream / GeometrySecMatchRPE.hh	types.hh
Hit.fwd.hh	types.hh
Hit.hh	types.hh
downstream / LigandConformerBuilder.cc	id / AtomID.hh
downstream / LigandConformerBuilder.cc	chemical / AtomType.hh
downstream / LigandConformerBuilder.cc	scoring / etable / count_pair / CountPairFunction.hh
downstream / LigandConformerBuilder.cc	pose / PDBInfo.hh
downstream / LigandConformerBuilder.cc	pose / Pose.hh
downstream / LigandConformerBuilder.cc	conformation / Residue.hh
downstream / LigandConformerBuilder.cc	pack / rotamers / SingleLigandRotamerLibrary.hh
downstream / LigandConformerBuilder.cc	pack / rotamers / SingleResidueRotamerLibraryFactory.hh
downstream / LigandConformerBuilder.hh	scoring / etable / count_pair / CountPairFunction.fwd.hh
downstream / LigandConformerBuilder.hh	conformation / Residue.fwd.hh
downstream / LigandConformerBuilder.hh	chemical / ResidueType.fwd.hh
downstream / LigandConformerBuilder.hh	types.hh
output / MatchConsolidator.hh	types.hh
Matcher.cc	scoring / etable / count_pair / CountPairFunction.hh
Matcher.cc	scoring / etable / count_pair / CountPairGeneric.hh
Matcher.cc	pose / Pose.hh
Matcher.cc	pack / dunbrack / SemiRotamericSingleResidueDunbrackLibrary.hh
Matcher.cc	pack / dunbrack / SingleResidueDunbrackLibrary.hh
Matcher.cc	pack / rotamers / SingleResidueRotamerLibraryFactory.hh
Matcher.hh	id / AtomID.fwd.hh
Matcher.hh	pose / Pose.fwd.hh
Matcher.hh	chemical / ResidueType.fwd.hh
Matcher.hh	types.hh
MatcherMover.cc	id / AtomID.hh
MatcherMover.cc	chemical / ChemicalManager.hh
MatcherMover.cc	conformation / Conformation.hh
MatcherMover.cc	pose / PDBInfo.hh
MatcherMover.cc	pose / Pose.hh
MatcherMover.cc	conformation / Residue.hh
MatcherMover.cc	conformation / ResidueFactory.hh
MatcherMover.cc	select / residue_selector / ResidueSelector.hh
MatcherMover.cc	chemical / ResidueType.hh
MatcherMover.cc	chemical / ResidueTypeSet.hh
MatcherMover.cc	scoring / ScoreFunction.hh
MatcherMover.cc	scoring / ScoreFunctionFactory.hh
MatcherMover.cc	pack / rotamers / SingleLigandRotamerLibrary.hh
MatcherMover.cc	pack / rotamers / SingleResidueRotamerLibraryFactory.hh
MatcherMover.cc	select / residue_selector / util.hh
MatcherMover.hh	pose / Pose.fwd.hh
MatcherMover.hh	conformation / Residue.fwd.hh
MatcherMover.hh	select / residue_selector / ResidueSelector.fwd.hh
MatcherMover.hh	types.hh
MatcherTask.cc	chemical / ChemicalManager.hh
MatcherTask.cc	conformation / Conformation.hh
MatcherTask.cc	scoring / func / Func.hh
MatcherTask.cc	pose / PDBInfo.hh
MatcherTask.cc	pose / Pose.hh
MatcherTask.cc	conformation / Residue.hh
MatcherTask.cc	chemical / ResidueType.hh
MatcherTask.hh	id / AtomID.fwd.hh
MatcherTask.hh	pose / Pose.fwd.hh
MatcherTask.hh	types.hh
output / MatchEvaluator.hh	types.hh
output / MatchGrouper.hh	types.hh
MatchPositionModifiers.cc	chemical / AA.hh
MatchPositionModifiers.cc	scoring / dssp / Dssp.hh
MatchPositionModifiers.cc	scoring / Energies.hh
MatchPositionModifiers.cc	pack / task / PackerTask.hh
MatchPositionModifiers.cc	pose / PDBInfo.hh
MatchPositionModifiers.cc	pose / Pose.hh
MatchPositionModifiers.cc	conformation / Residue.hh
MatchPositionModifiers.cc	chemical / ResidueType.hh
MatchPositionModifiers.cc	pack / task / TaskFactory.hh
MatchPositionModifiers.cc	pack / task / operation / TaskOperation.hh
MatchPositionModifiers.cc	pack / task / operation / TaskOperationFactory.hh
MatchPositionModifiers.cc	scoring / TenANeighborGraph.hh
MatchPositionModifiers.hh	pose / Pose.fwd.hh
MatchPositionModifiers.hh	pack / task / operation / TaskOperation.fwd.hh
MatchPositionModifiers.hh	types.hh
output / MatchScoreWriter.hh	types.hh
OccupiedSpaceHash.hh	types.hh
upstream / OriginalScaffoldBuildPoint.cc	conformation / Residue.hh
upstream / OriginalScaffoldBuildPoint.cc	pack / dunbrack / SingleResidueDunbrackLibrary.hh
upstream / OriginalScaffoldBuildPoint.hh	pose / Pose.fwd.hh
upstream / OriginalScaffoldBuildPoint.hh	conformation / Residue.fwd.hh
upstream / OriginalScaffoldBuildPoint.hh	types.hh
output / PDBWriter.cc	io / pdb / build_pose_as_is.hh
output / PDBWriter.cc	scoring / func / Func.hh
output / PDBWriter.cc	io / pdb / pdb_writer.hh
output / PDBWriter.cc	pose / PDBInfo.hh
output / PDBWriter.cc	pose / Pose.hh
output / PDBWriter.cc	io / Remarks.hh
output / PDBWriter.cc	conformation / Residue.hh
output / PDBWriter.hh	pose / Pose.fwd.hh
output / PDBWriter.hh	conformation / Residue.fwd.hh
output / PoseInserter.cc	pose / Pose.hh
output / PoseInserter.hh	pose / Pose.fwd.hh
output / ProcessorFactory.cc	pose / Pose.hh
output / ProcessorFactory.cc	conformation / Residue.hh
output / ProcessorFactory.cc	types.hh
output / ProcessorFactory.hh	types.hh
upstream / ProteinSCSampler.cc	pack / dunbrack / DunbrackRotamer.hh
upstream / ProteinSCSampler.cc	chemical / ResidueType.hh
upstream / ProteinSCSampler.cc	pack / dunbrack / RotamerLibrary.hh
upstream / ProteinSCSampler.cc	pack / dunbrack / SingleResidueDunbrackLibrary.hh
upstream / ProteinSCSampler.cc	pack / rotamers / SingleResidueRotamerLibraryFactory.hh
upstream / ProteinSCSampler.hh	pack / dunbrack / DunbrackRotamer.fwd.hh
upstream / ProteinSCSampler.hh	chemical / ResidueType.fwd.hh
upstream / ProteinUpstreamBuilder.cc	pack / dunbrack / DunbrackRotamer.hh
upstream / ProteinUpstreamBuilder.cc	pose / Pose.hh
upstream / ProteinUpstreamBuilder.cc	conformation / Residue.hh
upstream / ProteinUpstreamBuilder.cc	chemical / ResidueType.hh
upstream / ProteinUpstreamBuilder.cc	pack / dunbrack / RotamerLibrary.hh
upstream / ProteinUpstreamBuilder.cc	pack / dunbrack / RotamerLibraryScratchSpace.hh
upstream / ProteinUpstreamBuilder.cc	pack / rotamers / SingleResidueRotamerLibrary.hh
upstream / ProteinUpstreamBuilder.cc	pack / rotamers / SingleResidueRotamerLibraryFactory.hh
upstream / ProteinUpstreamBuilder.hh	pack / dunbrack / DunbrackRotamer.fwd.hh
upstream / ProteinUpstreamBuilder.hh	chemical / ResidueType.fwd.hh
upstream / ProteinUpstreamBuilder.hh	pack / task / RotamerSampleOptions.hh
upstream / ProteinUpstreamBuilder.hh	types.hh
downstream / RigidLigandBuilder.cc	id / AtomID.hh
downstream / RigidLigandBuilder.cc	chemical / AtomType.hh
downstream / RigidLigandBuilder.cc	scoring / etable / count_pair / CountPairFunction.hh
downstream / RigidLigandBuilder.cc	pose / PDBInfo.hh
downstream / RigidLigandBuilder.cc	pose / Pose.hh
downstream / RigidLigandBuilder.cc	conformation / Residue.hh
downstream / RigidLigandBuilder.hh	scoring / etable / count_pair / CountPairFunction.fwd.hh
downstream / RigidLigandBuilder.hh	conformation / Residue.fwd.hh
downstream / RigidLigandBuilder.hh	chemical / ResidueType.fwd.hh
downstream / RigidLigandBuilder.hh	types.hh
output / SameChiBinComboGrouper.cc	conformation / Residue.hh
output / SameChiBinComboGrouper.cc	pack / dunbrack / RotamerLibrary.hh
output / SameChiBinComboGrouper.cc	pack / dunbrack / SingleResidueDunbrackLibrary.hh
output / SameChiBinComboGrouper.cc	pack / rotamers / SingleResidueRotamerLibraryFactory.hh
output / SameSequenceGrouper.cc	id / AtomID.hh
output / SameSequenceGrouper.cc	conformation / Residue.hh
output / SameSequenceGrouper.hh	id / AtomID.fwd.hh
upstream / ScaffoldBuildPoint.hh	pose / Pose.fwd.hh
upstream / ScaffoldBuildPoint.hh	types.hh
downstream / ScoringSecMatchRPE.cc	scoring / methods / EnergyMethod.hh
downstream / ScoringSecMatchRPE.cc	scoring / methods / EnergyMethodOptions.hh
downstream / ScoringSecMatchRPE.cc	io / pdb / pdb_writer.hh
downstream / ScoringSecMatchRPE.cc	pose / Pose.hh
downstream / ScoringSecMatchRPE.cc	conformation / Residue.hh
downstream / ScoringSecMatchRPE.cc	scoring / ScoreFunction.hh
downstream / ScoringSecMatchRPE.cc	scoring / ScoreType.hh
downstream / ScoringSecMatchRPE.cc	scoring / ScoreTypeManager.hh
downstream / ScoringSecMatchRPE.cc	scoring / ScoringManager.hh
downstream / ScoringSecMatchRPE.hh	pose / Pose.fwd.hh
downstream / ScoringSecMatchRPE.hh	conformation / Residue.fwd.hh
downstream / ScoringSecMatchRPE.hh	scoring / ScoreFunction.fwd.hh
downstream / ScoringSecMatchRPE.hh	scoring / ScoreType.hh
downstream / ScoringSecMatchRPE.hh	types.hh
downstream / SecMatchEvaluatorFactory.hh	pose / Pose.fwd.hh
downstream / SecMatchEvaluatorFactory.hh	types.hh
downstream / SecMatchResiduePairEvaluator.hh	conformation / Residue.fwd.hh
downstream / SecMatchResiduePairEvaluator.hh	types.hh
downstream / SecondaryMatcherToDownstreamResidue.cc	pose / Pose.hh
downstream / SecondaryMatcherToDownstreamResidue.cc	conformation / Residue.hh
downstream / SecondaryMatcherToDownstreamResidue.cc	chemical / ResidueType.hh
downstream / SecondaryMatcherToDownstreamResidue.hh	id / AtomID.hh
downstream / SecondaryMatcherToDownstreamResidue.hh	conformation / Residue.fwd.hh
downstream / SecondaryMatcherToDownstreamResidue.hh	chemical / ResidueType.fwd.hh
downstream / SecondaryMatcherToDownstreamResidue.hh	types.hh
downstream / SecondaryMatcherToUpstreamResidue.cc	conformation / Residue.hh
downstream / SecondaryMatcherToUpstreamResidue.cc	chemical / ResidueType.hh
downstream / SecondaryMatcherToUpstreamResidue.hh	id / AtomID.hh
downstream / SecondaryMatcherToUpstreamResidue.hh	conformation / Residue.fwd.hh
downstream / SecondaryMatcherToUpstreamResidue.hh	chemical / ResidueType.fwd.hh
downstream / SecondaryMatcherToUpstreamResidue.hh	types.hh
upstream / UpstreamBuilder.hh	conformation / Residue.fwd.hh
upstream / UpstreamBuilder.hh	chemical / ResidueType.fwd.hh
output / UpstreamCollisionFilter.cc	scoring / methods / EnergyMethodOptions.hh
output / UpstreamCollisionFilter.cc	scoring / etable / EtableEnergy.hh
output / UpstreamCollisionFilter.cc	pose / Pose.hh
output / UpstreamCollisionFilter.cc	conformation / Residue.hh
output / UpstreamCollisionFilter.cc	scoring / ScoreFunction.hh
output / UpstreamCollisionFilter.cc	scoring / ScoringManager.hh
output / UpstreamCollisionFilter.hh	pose / Pose.fwd.hh
output / UpstreamCollisionFilter.hh	conformation / Residue.hh
output / UpstreamCollisionFilter.hh	scoring / ScoreFunction.fwd.hh
output / UpstreamCollisionFilter.hh	scoring / methods / ShortRangeTwoBodyEnergy.fwd.hh
output / UpstreamDownstreamCollisionFilter.cc	id / AtomID.hh
output / UpstreamDownstreamCollisionFilter.cc	pose / Pose.hh
output / UpstreamDownstreamCollisionFilter.cc	conformation / Residue.hh
output / UpstreamDownstreamCollisionFilter.cc	scoring / ScoreFunction.hh
output / UpstreamDownstreamCollisionFilter.cc	scoring / methods / ShortRangeTwoBodyEnergy.hh
output / UpstreamDownstreamCollisionFilter.hh	pose / Pose.hh
output / UpstreamDownstreamCollisionFilter.hh	conformation / Residue.hh
output / UpstreamDownstreamCollisionFilter.hh	scoring / ScoreFunction.fwd.hh
output / UpstreamDownstreamCollisionFilter.hh	scoring / methods / ShortRangeTwoBodyEnergy.fwd.hh
output / UpstreamHitCacher.cc	conformation / Residue.hh
upstream / UpstreamResTypeGeometry.cc	chemical / Atom.hh
upstream / UpstreamResTypeGeometry.cc	chemical / ResidueType.hh
upstream / UpstreamResTypeGeometry.hh	chemical / ResidueType.fwd.hh
upstream / UpstreamResTypeGeometry.hh	types.hh
output / WriteKinemageOutputter.cc	conformation / Residue.hh
output / WriteUpstreamCoordinateKineamge.cc	id / AtomID.hh
output / WriteUpstreamCoordinateKineamge.cc	chemical / AtomType.hh
output / WriteUpstreamCoordinateKineamge.cc	conformation / Residue.hh
output / WriteUpstreamCoordinateKineamge.cc	chemical / ResidueType.hh