methods → core Relation

File in src/protocols/scoring/methods	Includes file in src/core
EnsembleEnergy.cc	pose / datacache / CacheableDataType.hh
EnsembleEnergy.cc	scoring / EnergyMap.hh
EnsembleEnergy.cc	pose / Pose.hh
EnsembleEnergy.hh	pose / Pose.fwd.hh
EnsembleEnergy.hh	scoring / ScoreFunction.fwd.hh
EnsembleEnergy.hh	scoring / methods / WholeStructureEnergy.hh
EnsembleEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
EnsembleEnergyCreator.hh	types.hh
pcsTs4 / GridSearchIterator.hh	types.hh
pcsTs3 / GridSearchIterator.hh	types.hh
pcsTs2 / GridSearchIterator.hh	types.hh
pcsTs1 / GridSearchIterator.hh	types.hh
pcs / GridSearchIterator.hh	types.hh
pcs2 / GridSearchIteratorCA.cc	pose / Pose.hh
pcs2 / GridSearchIteratorCA.cc	conformation / Residue.hh
pcs2 / GridSearchIteratorCA.hh	pose / Pose.fwd.hh
pcs2 / GridSearchIteratorCA.hh	types.hh
InterchainEnvEnergy.cc	scoring / EnergyMap.hh
InterchainEnvEnergy.cc	scoring / EnvPairPotential.hh
InterchainEnvEnergy.cc	pose / Pose.hh
InterchainEnvEnergy.cc	scoring / ScoringManager.hh
InterchainEnvEnergy.hh	scoring / methods / ContextDependentOneBodyEnergy.hh
InterchainEnvEnergy.hh	scoring / EnvPairPotential.fwd.hh
InterchainEnvEnergy.hh	pose / Pose.fwd.hh
InterchainEnvEnergy.hh	conformation / Residue.fwd.hh
InterchainEnvEnergy.hh	scoring / ScoreFunction.fwd.hh
InterchainEnvEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
InterchainEnvEnergyCreator.hh	types.hh
InterchainPairEnergy.cc	scoring / EnergyMap.hh
InterchainPairEnergy.cc	scoring / EnvPairPotential.hh
InterchainPairEnergy.cc	pose / Pose.hh
InterchainPairEnergy.cc	scoring / ScoringManager.hh
InterchainPairEnergy.hh	scoring / methods / ContextIndependentTwoBodyEnergy.hh
InterchainPairEnergy.hh	scoring / EnvPairPotential.fwd.hh
InterchainPairEnergy.hh	pose / Pose.fwd.hh
InterchainPairEnergy.hh	conformation / Residue.fwd.hh
InterchainPairEnergy.hh	scoring / ScoreFunction.fwd.hh
InterchainPairEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
pcs2 / PcsDataCenter.cc	pose / Pose.hh
pcs2 / PcsDataCenter.cc	conformation / Residue.hh
pcs2 / PcsDataCenter.hh	pose / Pose.fwd.hh
pcs2 / PcsDataCenter.hh	types.hh
pcs2 / PcsDataCenterManager.hh	types.hh
pcs2 / PcsDataCenterManagerSingleton.hh	types.hh
pcs2 / PcsDataLanthanide.hh	types.hh
pcs2 / PcsEnergy.cc	pose / datacache / CacheableDataType.hh
pcs2 / PcsEnergy.cc	scoring / EnergyMap.hh
pcs2 / PcsEnergy.cc	optimization / Minimizer.hh
pcs2 / PcsEnergy.cc	pose / Pose.hh
pcs2 / PcsEnergy.cc	conformation / Residue.hh
pcs2 / PcsEnergy.hh	optimization / Minimizer.fwd.hh
pcs2 / PcsEnergy.hh	scoring / methods / WholeStructureEnergy.hh
pcs2 / PcsEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
pcs2 / PcsEnergyParameter.hh	types.hh
pcs2 / PcsGridSearchParameter.hh	types.hh
pcs2 / PcsGridSearchParameterManager.hh	types.hh
pcs2 / PcsInputCenter.hh	types.hh
pcs2 / PcsInputCenterManager.hh	types.hh
pcs2 / PcsInputLine.hh	types.hh
pcs2 / PcsTensor.hh	types.hh
saxs / PDDFEnergy.cc	chemical / AtomType.hh
saxs / PDDFEnergy.cc	chemical / ChemicalManager.hh
saxs / PDDFEnergy.cc	scoring / EnergyMap.hh
saxs / PDDFEnergy.cc	scoring / saxs / FormFactor.hh
saxs / PDDFEnergy.cc	scoring / saxs / FormFactorManager.hh
saxs / PDDFEnergy.cc	import_pose / import_pose.hh
saxs / PDDFEnergy.cc	kinematics / Jump.hh
saxs / PDDFEnergy.cc	pose / Pose.hh
saxs / PDDFEnergy.cc	conformation / Residue.hh
saxs / PDDFEnergy.cc	util / SwitchResidueTypeSet.hh
saxs / PDDFEnergy.cc	scoring / methods / WholeStructureEnergy.hh
saxs / PDDFEnergy.hh	scoring / methods / EnergyMethodOptions.fwd.hh
saxs / PDDFEnergy.hh	scoring / saxs / FormFactorManager.fwd.hh
saxs / PDDFEnergy.hh	pose / Pose.fwd.hh
saxs / PDDFEnergy.hh	scoring / ScoreFunction.fwd.hh
saxs / PDDFEnergy.hh	scoring / ScoreType.hh
saxs / PDDFEnergy.hh	scoring / methods / WholeStructureEnergy.hh
saxs / PDDFEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
pcsTs4 / PseudocontactShiftData.cc	pose / Pose.hh
pcsTs3 / PseudocontactShiftData.cc	pose / Pose.hh
pcsTs2 / PseudocontactShiftData.cc	pose / Pose.hh
pcsTs1 / PseudocontactShiftData.cc	pose / Pose.hh
pcs / PseudocontactShiftData.cc	pose / Pose.hh
pcsTs4 / PseudocontactShiftData.cc	conformation / Residue.hh
pcsTs3 / PseudocontactShiftData.cc	conformation / Residue.hh
pcsTs2 / PseudocontactShiftData.cc	conformation / Residue.hh
pcsTs1 / PseudocontactShiftData.cc	conformation / Residue.hh
pcs / PseudocontactShiftData.cc	conformation / Residue.hh
pcsTs4 / PseudocontactShiftData.hh	pose / Pose.fwd.hh
pcsTs3 / PseudocontactShiftData.hh	pose / Pose.fwd.hh
pcsTs2 / PseudocontactShiftData.hh	pose / Pose.fwd.hh
pcsTs1 / PseudocontactShiftData.hh	pose / Pose.fwd.hh
pcs / PseudocontactShiftData.hh	pose / Pose.fwd.hh
pcsTs4 / PseudocontactShiftData.hh	types.hh
pcsTs3 / PseudocontactShiftData.hh	types.hh
pcsTs2 / PseudocontactShiftData.hh	types.hh
pcsTs1 / PseudocontactShiftData.hh	types.hh
pcs / PseudocontactShiftData.hh	types.hh
pcsTs4 / PseudocontactShiftEnergy.cc	pose / datacache / CacheableDataType.hh
pcsTs3 / PseudocontactShiftEnergy.cc	pose / datacache / CacheableDataType.hh
pcsTs2 / PseudocontactShiftEnergy.cc	pose / datacache / CacheableDataType.hh
pcsTs1 / PseudocontactShiftEnergy.cc	pose / datacache / CacheableDataType.hh
pcs / PseudocontactShiftEnergy.cc	pose / datacache / CacheableDataType.hh
pcsTs4 / PseudocontactShiftEnergy.cc	scoring / EnergyMap.hh
pcsTs3 / PseudocontactShiftEnergy.cc	scoring / EnergyMap.hh
pcsTs2 / PseudocontactShiftEnergy.cc	scoring / EnergyMap.hh
pcsTs1 / PseudocontactShiftEnergy.cc	scoring / EnergyMap.hh
pcs / PseudocontactShiftEnergy.cc	scoring / EnergyMap.hh
pcsTs4 / PseudocontactShiftEnergy.cc	optimization / Minimizer.hh
pcsTs3 / PseudocontactShiftEnergy.cc	optimization / Minimizer.hh
pcsTs2 / PseudocontactShiftEnergy.cc	optimization / Minimizer.hh
pcsTs1 / PseudocontactShiftEnergy.cc	optimization / Minimizer.hh
pcs / PseudocontactShiftEnergy.cc	optimization / Minimizer.hh
pcsTs4 / PseudocontactShiftEnergy.cc	optimization / MinimizerOptions.hh
pcsTs3 / PseudocontactShiftEnergy.cc	optimization / MinimizerOptions.hh
pcsTs2 / PseudocontactShiftEnergy.cc	optimization / MinimizerOptions.hh
pcsTs1 / PseudocontactShiftEnergy.cc	optimization / MinimizerOptions.hh
pcs / PseudocontactShiftEnergy.cc	optimization / MinimizerOptions.hh
pcsTs4 / PseudocontactShiftEnergy.cc	pose / Pose.hh
pcsTs3 / PseudocontactShiftEnergy.cc	pose / Pose.hh
pcsTs2 / PseudocontactShiftEnergy.cc	pose / Pose.hh
pcsTs1 / PseudocontactShiftEnergy.cc	pose / Pose.hh
pcs / PseudocontactShiftEnergy.cc	pose / Pose.hh
pcsTs4 / PseudocontactShiftEnergy.cc	conformation / Residue.hh
pcsTs3 / PseudocontactShiftEnergy.cc	conformation / Residue.hh
pcsTs2 / PseudocontactShiftEnergy.cc	conformation / Residue.hh
pcsTs1 / PseudocontactShiftEnergy.cc	conformation / Residue.hh
pcs / PseudocontactShiftEnergy.cc	conformation / Residue.hh
pcsTs4 / PseudocontactShiftEnergy.hh	pose / Pose.fwd.hh
pcsTs3 / PseudocontactShiftEnergy.hh	pose / Pose.fwd.hh
pcsTs2 / PseudocontactShiftEnergy.hh	pose / Pose.fwd.hh
pcsTs1 / PseudocontactShiftEnergy.hh	pose / Pose.fwd.hh
pcs / PseudocontactShiftEnergy.hh	pose / Pose.fwd.hh
pcsTs4 / PseudocontactShiftEnergy.hh	scoring / ScoreType.hh
pcsTs3 / PseudocontactShiftEnergy.hh	scoring / ScoreType.hh
pcsTs2 / PseudocontactShiftEnergy.hh	scoring / ScoreType.hh
pcsTs1 / PseudocontactShiftEnergy.hh	scoring / ScoreType.hh
pcs / PseudocontactShiftEnergy.hh	scoring / ScoreType.hh
pcsTs4 / PseudocontactShiftEnergy.hh	scoring / methods / WholeStructureEnergy.hh
pcsTs3 / PseudocontactShiftEnergy.hh	scoring / methods / WholeStructureEnergy.hh
pcsTs2 / PseudocontactShiftEnergy.hh	scoring / methods / WholeStructureEnergy.hh
pcsTs1 / PseudocontactShiftEnergy.hh	scoring / methods / WholeStructureEnergy.hh
pcs / PseudocontactShiftEnergy.hh	scoring / methods / WholeStructureEnergy.hh
pcsTs4 / PseudocontactShiftEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
pcsTs3 / PseudocontactShiftEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
pcsTs2 / PseudocontactShiftEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
pcsTs1 / PseudocontactShiftEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
pcs / PseudocontactShiftEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
pcsTs4 / PseudocontactShiftInput.hh	types.hh
pcsTs3 / PseudocontactShiftInput.hh	types.hh
pcsTs2 / PseudocontactShiftInput.hh	types.hh
pcsTs1 / PseudocontactShiftInput.hh	types.hh
pcs / PseudocontactShiftInput.hh	types.hh
pcsTs4 / PseudocontactShiftTensor.hh	types.hh
pcsTs3 / PseudocontactShiftTensor.hh	types.hh
pcsTs2 / PseudocontactShiftTensor.hh	types.hh
pcsTs1 / PseudocontactShiftTensor.hh	types.hh
pcs / PseudocontactShiftTensor.hh	types.hh
ResidualDipolarCouplingEnergyRigidSegments.cc	scoring / EnergyMap.hh
ResidualDipolarCouplingEnergyRigidSegments.cc	scoring / ScoreType.hh
ResidualDipolarCouplingEnergyRigidSegments.hh	id / AtomID_Map.hh
ResidualDipolarCouplingEnergyRigidSegments.hh	pose / Pose.fwd.hh
ResidualDipolarCouplingEnergyRigidSegments.hh	scoring / ScoreFunction.fwd.hh
ResidualDipolarCouplingEnergyRigidSegments.hh	scoring / ScoreType.hh
ResidualDipolarCouplingEnergyRigidSegments.hh	scoring / methods / WholeStructureEnergy.hh
ResidualDipolarCouplingEnergyRigidSegmentsCreator.hh	scoring / methods / EnergyMethodCreator.hh
SpecialRotamerEnergy.cc	scoring / methods / ContextIndependentOneBodyEnergy.hh
SpecialRotamerEnergy.cc	scoring / EnergyMap.hh
SpecialRotamerEnergy.cc	conformation / Residue.hh
SpecialRotamerEnergy.hh	scoring / methods / ContextIndependentOneBodyEnergy.hh
SpecialRotamerEnergy.hh	id / DOF_ID.fwd.hh
SpecialRotamerEnergy.hh	pose / Pose.fwd.hh
SpecialRotamerEnergy.hh	scoring / ScoreFunction.fwd.hh
SpecialRotamerEnergy.hh	id / TorsionID.fwd.hh
SpecialRotamerEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
TargetClashEnergy.cc	id / AtomID_Map.hh
TargetClashEnergy.cc	pose / datacache / CacheableDataType.hh
TargetClashEnergy.cc	chemical / ChemicalManager.hh
TargetClashEnergy.cc	scoring / EnergyMap.hh
TargetClashEnergy.cc	import_pose / import_pose.hh
TargetClashEnergy.cc	pose / Pose.hh
TargetClashEnergy.cc	conformation / Residue.hh
TargetClashEnergy.cc	conformation / ResidueFactory.hh
TargetClashEnergy.cc	chemical / ResidueTypeSet.hh
TargetClashEnergy.cc	scoring / ScoringManager.hh
TargetClashEnergy.cc	pose / xyzStripeHashPose.hh
TargetClashEnergy.hh	scoring / methods / EnergyMethod.hh
TargetClashEnergy.hh	scoring / methods / EnergyMethodOptions.hh
TargetClashEnergy.hh	scoring / ScoreFunction.fwd.hh
TargetClashEnergy.hh	scoring / ScoreType.hh
TargetClashEnergy.hh	scoring / methods / WholeStructureEnergy.hh
TargetClashEnergyCreator.hh	scoring / methods / EnergyMethod.fwd.hh
TargetClashEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
TargetClashEnergyCreator.hh	scoring / methods / EnergyMethodOptions.fwd.hh
pcsTs4 / TensorsOptimizer.hh	optimization / Multifunc.hh
pcsTs3 / TensorsOptimizer.hh	optimization / Multifunc.hh
pcsTs2 / TensorsOptimizer.hh	optimization / Multifunc.hh
pcsTs1 / TensorsOptimizer.hh	optimization / Multifunc.hh
pcs2 / TensorsOptimizer.hh	optimization / Multifunc.hh
pcs / TensorsOptimizer.hh	optimization / Multifunc.hh
pcs2 / TensorsOptimizerFix.hh	optimization / Multifunc.hh
pcs2 / TensorsOptimizerSvd.hh	optimization / Multifunc.hh