- c -

• CacheableData : core::scoring::ResPairMinimizationData , core::scoring::ResSingleMinimizationData
• CacheableDataCOP : core::scoring::constraints::CstMinimizationData , core::scoring::ResidueNblistData , core::scoring::ResiduePairNeighborList , core::scoring::ResPairMinimizationData , core::scoring::ResSingleMinimizationData
• CacheableDataOP : core::energy_methods::DisulfMinData , core::scoring::constraints::CstMinimizationData , core::scoring::ResidueNblistData , core::scoring::ResiduePairNeighborList , core::scoring::ResPairMinimizationData , core::scoring::ResSingleMinimizationData , protocols::denovo_design::components::StructureData
• CacheMap : core::fragment::Frame
• calc_calcn : protocols::task_operations::RestrictByCalculatorsOperation
• CalibratorMap : protocols::noesy_assign::PeakCalibratorMap
• CAP : protocols::genetic_algorithm::Entity
• CAPs : protocols::genetic_algorithm::Entity
• CD_1B_Methods : core::scoring::ScoreFunction
• CD_2B_Methods : core::scoring::ScoreFunction
• CD_LR_2B_MethodIterator : core::scoring::ScoreFunction
• CD_LR_2B_Methods : core::scoring::ScoreFunction
• CellOP : core::sequence::DP_Matrix
• CentroidDisulfidePotential : core::energy_methods::CentroidDisulfideEnergy
• Charged_Group : protocols::simple_filters::InterfaceHbondsFilter
• ChiBinComboCountMap : protocols::match::output::SameChiBinComboGrouper
• ChiSetOP : core::pack::rotamer_set::RotamerSet_
• ChiVector : protocols::simple_moves::sidechain_moves::SidechainMoverBase
• ChunkLibraryInputSourcesAndInputters : protocols::jd3::chunk_library_inputters::ChunkLibraryInputterFactory
• ChunkLibraryInputterMap : protocols::jd3::chunk_library_inputters::ChunkLibraryInputterFactory
• ChunkList : protocols::abinitio::abscript::ResidueChunkSelection
• Chunks : protocols::nonlocal::SingleFragmentMover
• CI_1B_Methods : core::scoring::ScoreFunction
• CI_2B_Methods : core::scoring::ScoreFunction
• CI_LR_2B_MethodIterator : core::scoring::ScoreFunction
• CI_LR_2B_Methods : core::scoring::ScoreFunction
• ClashCheckerPtr : core::scoring::motif::MotifHash
• ClassicFragmentMoverOP : protocols::forge::remodel::RemodelLoopMover
• ClientMoverOP : protocols::abinitio::abscript::AbscriptMover , protocols::abinitio::abscript::AbscriptStageMover
• Clones : core::conformation::symmetry::SymmetryInfo
• Cluster : protocols::toolbox::ClusterBase
• ClusterDisList : protocols::toolbox::KClusterElement
• ClusterIterator : protocols::toolbox::ClusterBase
• ClusterList : protocols::toolbox::ClusterBase
• ClusterNdxList : protocols::toolbox::KClusterElement
• ClusterPhilStyleOP : protocols::forge::remodel::RemodelAccumulator
• ClusterTypList : protocols::toolbox::KClusterElement
• CompletionMessage : protocols::jd2::archive::ArchiveManager
• CompletionMessages : protocols::jd2::archive::ArchiveManager
• CompoundFactory : protocols::task_operations::StoreCompoundTaskMover
• Compounds : core::io::HeaderInformation
• CompoundStatement : protocols::filters::CompoundFilter
• CompoundTask : protocols::task_operations::StoreCompoundTaskMover
• Config : protocols::indexed_structure_store::DirectSegmentLookup , protocols::indexed_structure_store::SegmentSequenceProfile
• Conformation : core::chemical::ICoorAtomID , core::conformation::signals::ConnectionEvent , core::conformation::signals::GeneralEvent , core::pose::Pose , core::scoring::constraints::Constraints , core::scoring::constraints::SequenceProfileConstraint , core::scoring::func::FourPointsFunc , core::scoring::func::XYZ_Func , protocols::constraints_additional::SequenceCoupling1BDConstraint , protocols::constraints_additional::SequenceCouplingConstraint , protocols::environment::EnvClaimBroker , protocols::environment::Environment
• ConformationAP : protocols::environment::Environment
• ConformationCOP : core::pose::Pose , protocols::environment::EnvClaimBroker , protocols::environment::Environment
• ConformationEvent : core::pose::Pose , protocols::boinc::BoincCurrentPoseObserver
• ConformationOP : core::pose::Pose , protocols::environment::EnvClaimBroker , protocols::environment::Environment
• connection : core::conformation::carbohydrates::GlycanNode
• ConnectionArchitectCOPs : protocols::denovo_design::movers::FoldArchitectMover
• ConnectionEvent : core::conformation::Conformation
• ConservationMap : core::pose::datacache::PositionConservedResiduesStore
• const_decoy_iterator : protocols::jd2::archive::ArchiveBase
• const_factory_iterator : protocols::task_operations::StoreCompoundTaskMover
• const_iterator : core::chemical::AtomRefMapping< FromRef, ToRef > , core::conformation::Conformation , core::environment::DofPassport , core::kinematics::FoldTree , core::optimization::MinimizerMap , core::optimization::symmetry::SymMinimizerMap , core::pack::interaction_graph::MultiplexedAnnealableGraph , core::pack::task::TaskFactory , core::pose::Pose , core::scoring::constraints::Constraints , core::scoring::constraints::ResidueConstraints , core::scoring::dssp::StrandPairingSet , core::scoring::EMapVector , protocols::abinitio::abscript::ResidueChunkSelection , protocols::abinitio::PairingStatistics , protocols::abinitio::Templates , protocols::constraint_generator::ConstraintsMap , protocols::filters::CompoundFilter , protocols::hotspot_hashing::HotspotStubSet , protocols::jumping::JumpSelector , protocols::jumping::JumpSetup , protocols::jumping::ResiduePairJumpSetup , protocols::legacy_sewing::coord_equal_to , protocols::loops::Loops , protocols::mean_field::jagged_array< T, A > , protocols::noesy_assign::CrossPeak , protocols::noesy_assign::CrossPeakList , protocols::noesy_assign::MethylNames , protocols::noesy_assign::ResonanceList , protocols::protein_interface_design::movers::PlacementAuctionMover , protocols::rosetta_scripts::ParsedProtocol , protocols::sewing::hashing::coord_equal_to , protocols::splice::ResidueBBDofs , protocols::topology_broker::TopologyBroker , protocols::wum::SilentStructStore , protocols::wum::WorkUnitManager , protocols::wum::WorkUnitQueue
• const_pointer : protocols::mean_field::jagged_array< T, A >
• const_reference : core::id::AtomID_Map< T > , core::id::DOF_ID_Map< T > , core::id::NamedAtomID_Map< T > , protocols::mean_field::jagged_array< T, A >
• const_reverse_iterator : protocols::mean_field::jagged_array< T, A >
• const_task_iterator : protocols::task_operations::StoreCompoundTaskMover
• ConstantLengthFragSetOP : protocols::forge::components::VarLengthBuild
• ConstDaemonList : protocols::pack_daemon::DaemonSet
• ConstDaemonListIter : protocols::pack_daemon::DaemonSet
• ConstDataMap : core::pose::Pose
• ConstDataMapOP : core::pose::Pose
• ConstIterator : protocols::mean_field::jagged_array< T, A >
• ConstPointer : protocols::mean_field::jagged_array< T, A >
• ConstraintCOPs : protocols::constraint_generator::ConstraintsManager , protocols::constraint_generator::ConstraintsMap
• ConstraintCreatorMap : core::scoring::constraints::ConstraintFactory
• ConstraintGeneratorCOP : protocols::denovo_design::movers::FoldArchitectMover
• ConstraintGeneratorCOPs : protocols::constraint_filters::ConstraintScoreFilter , protocols::denovo_design::movers::FoldArchitectMover
• ConstraintGeneratorOP : protocols::denovo_design::movers::FoldArchitectMover
• ConstraintOP : core::scoring::constraints::SequenceProfileConstraint , protocols::constraints_additional::SequenceCoupling1BDConstraint , protocols::constraints_additional::SequenceCouplingConstraint
• ConstraintSet : protocols::aa_composition::AddCompositionConstraintMover , protocols::aa_composition::AddMHCEpitopeConstraintMover , protocols::aa_composition::AddNetChargeConstraintMover , protocols::aa_composition::ClearCompositionConstraintsMover , protocols::comparative_modeling::IgnoreSubsetConstraintSet , protocols::constraint_movers::ConstraintSetMover , protocols::forge::remodel::RemodelGlobalFrame , protocols::forge::remodel::RemodelLigandHandler
• ConstraintSetCOP : core::pose::Pose , protocols::aa_composition::AddCompositionConstraintMover , protocols::aa_composition::AddMHCEpitopeConstraintMover , protocols::aa_composition::AddNetChargeConstraintMover , protocols::aa_composition::ClearCompositionConstraintsMover , protocols::constraint_movers::ConstraintSetMover
• ConstraintSetOP : core::pose::Pose , protocols::aa_composition::AddCompositionConstraintMover , protocols::aa_composition::AddMHCEpitopeConstraintMover , protocols::aa_composition::AddNetChargeConstraintMover , protocols::aa_composition::ClearCompositionConstraintsMover , protocols::comparative_modeling::IgnoreSubsetConstraintSet , protocols::constraint_movers::ConstraintSetMover , protocols::constraints_additional::MaxSeqSepConstraintSet , protocols::forge::remodel::RemodelGlobalFrame , protocols::forge::remodel::RemodelLigandHandler
• ConstReference : core::id::AtomID_Map< T > , core::id::DOF_ID_Map< T > , core::id::NamedAtomID_Map< T > , protocols::mean_field::jagged_array< T, A >
• ConstReverseIterator : protocols::mean_field::jagged_array< T, A >
• ContactMolecularSurfaceCalculator : protocols::simple_filters::ContactMolecularSurfaceFilter
• Coordinate : protocols::indexed_structure_store::search::StructureData , protocols::indexed_structure_store::search::StructurePairQuery , protocols::indexed_structure_store::search::StructureSingleQuery
• CoordinateMatrix : protocols::indexed_structure_store::search::StructureData , protocols::indexed_structure_store::search::StructurePairQuery , protocols::indexed_structure_store::search::StructureSingleQuery
• Coords : core::io::StructFileRep
• CoordVector : core::scoring::nmr::pre::PREMultiSet , protocols::evaluation::PCA
• COP : protocols::canonical_sampling::BiasEnergy::Histogram< T > , protocols::genetic_algorithm::Entity , protocols::genetic_algorithm::EntityRandomizer , protocols::genetic_algorithm::FitnessFunction , protocols::genetic_algorithm::PositionSpecificRandomizer , protocols::multistate_design::MultiStateAggregateFunction , protocols::multistate_design::PartitionAggregateFunction
• COPs : protocols::genetic_algorithm::Entity
• CornerPoints : protocols::match::Bool3DGrid
• CountPairFunctionCOP : core::scoring::ResidueNblistData
• CreatorList : protocols::jd3::chunk_library_inputters::ChunkLibraryInputterFactory , protocols::jd3::full_model_inputters::FullModelInputterFactory , protocols::jd3::pose_inputters::PoseInputterFactory , protocols::jd3::pose_outputters::PoseOutputterFactory
• CreatorMap : core::chemical::rotamers::RotamerLibrarySpecificationFactory , core::pack::rotamers::SingleResidueRotamerLibraryFactory , core::simple_metrics::SimpleMetricFactory , protocols::constraint_generator::ConstraintGeneratorFactory
• CrossPeaks : protocols::noesy_assign::CrossPeakList
• CrystInfo : core::pose::PDBInfo
• CSA_lines : core::scoring::ChemicalShiftAnisotropy
• cstInfoMap : protocols::jumping::ResiduePairJump
• cstInfoMapIterator : protocols::jumping::ResiduePairJump
• CutBiasElemVect : protocols::environment::EnvClaimBroker
• CutElemVect : protocols::environment::EnvClaimBroker
• Cutpoints : protocols::denovo_design::movers::SealFoldTreeMover
• CyclizedReportInfoCOP : protocols::peptide_deriver::PeptideDeriverMarkdownStreamOutputter
• CyclizedReportInfoOP : protocols::peptide_deriver::PeptideDeriverMarkdownStreamOutputter