- e -

• Edge : core::scoring::constraints::ConstraintEdge
• EdgeBase : protocols::flexpack::interaction_graph::FlexbbInteractionGraph
• EdgeList : core::environment::FoldTreeSketch::Node , core::kinematics::FoldTree , core::kinematics::ShortestPathInFoldTree
• EdgeListConstIter : core::scoring::constraints::CstResNeighbConstIterator
• EdgeListIter : core::scoring::constraints::CstResNeighbIterator
• ElementSets : core::chemical::ChemicalManager
• EliminatorFunction : core::pack::rotamer_set::PyRotamerEliminator
• Energies : core::scoring::MinimizationGraph
• EnergiesEdge : protocols::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
• EnergiesGraph : protocols::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
• EnergiesIterator : core::scoring::MinimizationGraph
• EnergiesUpperEdgeListConstIter : protocols::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
• EnergiesUpperEdgeListIter : protocols::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
• EnergiesVertex : protocols::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
• EnergyEvent : core::pose::Pose
• EnergyGraph : core::scoring::Energies , protocols::fldsgn::potentials::sspot::HSPairPotential , protocols::fldsgn::potentials::sspot::SSPairPotential
• EnergyMap : core::energy_methods::AACompositionEnergy , core::energy_methods::AARepeatEnergy , core::energy_methods::DNATorsionEnergy , core::energy_methods::FACTSEnergy , core::energy_methods::RNA_CoarseDistEnergy , core::scoring::constraints::SequenceProfileConstraint , core::scoring::Energies , core::scoring::EnergyEdge , protocols::constraints_additional::SequenceCoupling1BDConstraint , protocols::constraints_additional::SequenceCouplingConstraint , protocols::fldsgn::potentials::AACompositionEnergy , protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy , protocols::minimization_packing::GreenPacker , protocols::nmr::pcs::PCSEnergy , protocols::nmr::pre::PREEnergy , protocols::nmr::rdc::RDCEnergy , protocols::optimize_weights::IterativeOptEDriver , protocols::optimize_weights::OptEData , protocols::optimize_weights::OptEMultifunc , protocols::optimize_weights::OptEPositionData , protocols::optimize_weights::WrapperOptEMultifunc
• EnergyMethod : core::energy_methods::FACTSEnergy
• EnergyMethodOP : core::energy_methods::FACTSEnergy , core::energy_methods::RNA_StubCoordinateEnergy , protocols::fldsgn::potentials::AACompositionEnergy , protocols::fldsgn::potentials::AACompositionEnergyCreator , protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy , protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergyCreator
• EnergyMethodOptions : core::energy_methods::FACTSEnergy , protocols::fldsgn::potentials::AACompositionEnergyCreator , protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergyCreator
• EnergyMethods : core::scoring::MinimizationNode
• EnergyMethodsIterator : core::scoring::MinimizationNode
• EnergyVector : core::scoring::mm::MMLJEnergyTable
• EntElemEq : protocols::pack_daemon::PackDaemon
• Entity : protocols::pack_daemon::DaemonSet , protocols::pack_daemon::DynamicAggregateFunction , protocols::pack_daemon::EntityFunc , protocols::pack_daemon::MultistateAggregateFunction , protocols::pack_daemon::MultistateFitnessFunction , protocols::pack_daemon::PackDaemon , protocols::pack_daemon::TopEntitySet
• EntityAndScore : protocols::pack_daemon::EntityHistoryLT , protocols::pack_daemon::MultistateFitnessFunction , protocols::pack_daemon::TopEntitySet
• EntityCAP : protocols::genetic_algorithm::GeneticAlgorithmBase
• EntityCAPs : protocols::genetic_algorithm::GeneticAlgorithmBase
• EntityCOP : protocols::genetic_algorithm::EntityRandomizer , protocols::genetic_algorithm::GeneticAlgorithmBase
• EntityCOPs : protocols::genetic_algorithm::GeneticAlgorithmBase
• EntityElement : protocols::pack_daemon::PackDaemon
• EntityElementOP : protocols::multistate_design::MultiStateEntity , protocols::multistate_design::PosType , protocols::multistate_design::PosTypeCreator , protocols::pack_daemon::PackDaemon
• EntityElements : protocols::pack_daemon::PackDaemon
• EntityHistory : protocols::pack_daemon::MultistateFitnessFunction , protocols::pack_daemon::TopEntitySet
• EntityOP : protocols::genetic_algorithm::EntityRandomizer , protocols::genetic_algorithm::GeneticAlgorithmBase , protocols::multistate_design::MultiStateEntity , protocols::pack_daemon::DaemonSet , protocols::pack_daemon::MultistateFitnessFunction , protocols::pack_daemon::PackDaemon , protocols::pack_daemon::TopEntitySet
• EntityRandomizerOP : protocols::genetic_algorithm::GeneticAlgorithmBase
• EntityToRotamerHash : protocols::pack_daemon::PackDaemon
• EntryList : protocols::sparta::GDB
• EntryMap : protocols::sparta::PDB
• EnvClaims : protocols::abinitio::abscript::AbscriptLoopCloserCM , protocols::abinitio::abscript::AbscriptMover , protocols::abinitio::abscript::ConstraintPreparer , protocols::abinitio::abscript::FragmentCM , protocols::abinitio::abscript::FragmentJumpCM , protocols::abinitio::abscript::RigidChunkCM , protocols::abinitio::abscript::StructPerturberCM , protocols::environment::CoMTrackerCM , protocols::environment::ScriptCM , protocols::loops::loop_mover::LoopCM , protocols::rigid::UniformRigidBodyCM
• Evaluator : core::scoring::etable::AnalyticEtableEnergy , core::scoring::etable::TableLookupEtableEnergy
• Evaluator_MCFI_ID_Pair : protocols::match::downstream::SecondaryMatcherToDownstreamResidue , protocols::match::downstream::SecondaryMatcherToUpstreamResidue
• EvaluatorCreatorMap : protocols::evaluation::EvaluatorFactory
• EvaluatorList : protocols::evaluation::MetaPoseEvaluator
• EvaluatorMap : protocols::jd2::archive::EvaluatedArchive
• EvaluatorSet : protocols::match::downstream::SecondaryMatcherToDownstreamResidue , protocols::match::downstream::SecondaryMatcherToUpstreamResidue
• ExchangeRequestMap : protocols::canonical_sampling::AsyncMPITemperingBase
• ExchangeSchedule : protocols::canonical_sampling::HamiltonianExchange , protocols::canonical_sampling::ParallelTempering
• Expression : protocols::pack_daemon::DynamicAggregateFunction , protocols::pack_daemon::EntityFunc
• ExpressionCOP : protocols::pack_daemon::DynamicAggregateFunction , protocols::pack_daemon::EntityFunc , protocols::pack_daemon::EntityFuncExpressionCreator , protocols::pack_daemon::ExpExpression , protocols::pack_daemon::InSetExpression , protocols::pack_daemon::LnExpression , protocols::pack_daemon::PowExpression , protocols::pack_daemon::SurrogateVariableExpression , protocols::pack_daemon::VectorExpression , protocols::pack_daemon::VectorExpressionCreator , protocols::pack_daemon::VectorFunction2 , protocols::pack_daemon::VectorFunction
• ExpressionOP : protocols::pack_daemon::DynamicAggregateFunction , protocols::pack_daemon::EntityFunc
• ExpressionValues : protocols::pack_daemon::DynamicAggregateFunction
• Extent : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library > , core::fragment::picking_old::vall::eval::ABEGOEval , core::fragment::picking_old::vall::eval::EnergyEval , core::fragment::picking_old::vall::eval::IdentityEval , core::fragment::picking_old::vall::eval::VallFragmentEval , core::fragment::picking_old::vall::gen::LengthGen , core::fragment::picking_old::vall::gen::SecStructGen , core::fragment::picking_old::vall::gen::VallFragmentGen
• ExtentEvalCOP : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library > , core::fragment::picking_old::vall::VallLibrarian
• ExtentEvalOP : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library > , core::fragment::picking_old::vall::VallLibrarian
• ExtentEvalOPs : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library > , core::fragment::picking_old::vall::VallLibrarian
• ExtentGenCOP : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library > , core::fragment::picking_old::vall::VallLibrarian
• ExtentGenOP : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library > , core::fragment::picking_old::vall::VallLibrarian
• ExtentGenOPs : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library > , core::fragment::picking_old::vall::VallLibrarian
• ExtraResidues : protocols::comparative_modeling::ThreadingJobInputter
• ExtraRotSample : protocols::match::upstream::FullChiSampleSet , protocols::match::upstream::SampleStrategyData