- f -

• FA1Dd : protocols::toolbox::KClusterData
• FA2d : protocols::toolbox::KCluster , protocols::toolbox::KClusterData
• FA2Dd : protocols::toolbox::KCluster , protocols::toolbox::KClusterData
• FA2Pd : protocols::toolbox::KCluster , protocols::toolbox::KClusterData
• FA3Pd : protocols::toolbox::KClusterData
• factory_iterator : protocols::task_operations::StoreCompoundTaskMover
• FACTSPotential : core::energy_methods::FACTSEnergy
• FArray1_real : core::scoring::SecondaryStructurePotential
• FArray1A_real : core::scoring::SecondaryStructurePotential
• FArray1D_int : core::scoring::Helices , core::scoring::SecondaryStructurePotential , core::scoring::Strands , protocols::fldsgn::potentials::sspot::HSPairPotential , protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential , protocols::fldsgn::potentials::sspot::SSPairPotential
• FArray1D_real : core::scoring::SecondaryStructurePotential , protocols::fldsgn::potentials::sspot::HSPairPotential , protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential , protocols::fldsgn::potentials::sspot::SSPairPotential
• FArray2D_int : core::scoring::Helices , core::scoring::Strands
• FArray2D_PackerEnergy : protocols::flexpack::interaction_graph::OTFFlexbbEdge
• FArray2D_real : core::scoring::SecondaryStructurePotential
• FArray3D_Real : core::scoring::dna::DNA_BasePotential
• FArray4D_Real : core::scoring::dna::DNA_BasePotential
• FArray4D_real : core::scoring::SecondaryStructurePotential , protocols::fldsgn::potentials::sspot::HSPairPotential , protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential , protocols::fldsgn::potentials::sspot::SSPairPotential
• FASTERInteractionGraphOP : protocols::pack_daemon::FASTER_IG_Repacker
• FeaturesReporterCreatorMap : protocols::features::FeaturesReporterFactory
• FeaturesReporters : protocols::features::Report
• FileList : protocols::comparative_modeling::ThreadingJobInputter
• FileName : core::import_pose::pose_stream::LazySilentFilePoseInputStream , core::import_pose::pose_stream::SilentFilePoseInputStream , core::sequence::ChemicalShiftSequence , core::sequence::SequenceCoupling , core::sequence::SequenceProfile
• Filenames : protocols::jd2::MpiFileBuffer
• FileNames : protocols::motifs::MotifLibrary
• Filter : protocols::calc_taskop_filters::ConservedPosMutationFilter , protocols::dna_dock::DNAClashCheckFilter , protocols::dna_dock::PropagateClashCheckFilter , protocols::enzdes::DiffAtomSasaFilter , protocols::enzdes::EnzdesScorefileFilter , protocols::enzdes::EnzScoreFilter , protocols::enzdes::LigBurialFilter , protocols::enzdes::LigDSasaFilter , protocols::enzdes::LigInterfaceEnergyFilter , protocols::enzdes::RemoveLigandFilter , protocols::enzdes::RepackWithoutLigandFilter , protocols::enzdes::ResidueConformerFilter , protocols::fldsgn::filters::CoreDunbrackFilter , protocols::fldsgn::filters::FragQualFilter , protocols::fldsgn::filters::HelixKinkFilter , protocols::fldsgn::filters::HelixPairingFilter , protocols::fldsgn::filters::HSSTripletFilter , protocols::fldsgn::filters::InterlockingAromaFilter , protocols::fldsgn::filters::NcontactsFilter , protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter , protocols::fldsgn::filters::SecondaryStructureCountFilter , protocols::fldsgn::filters::SecondaryStructureFilter , protocols::fldsgn::filters::SecondaryStructureHasResidueFilter , protocols::fldsgn::filters::SheetTopologyFilter , protocols::fldsgn::filters::StrandCurvatureByLevels , protocols::matdes::ClashCheckFilter , protocols::matdes::GetRBDOFValues , protocols::matdes::OligomericAverageDegreeFilter , protocols::matdes::SymUnsatHbondFilter , protocols::simple_ddg::SSElementBisectddGFilter , protocols::simple_filters::ContactMolecularSurfaceFilter , protocols::simple_filters::HolesFilter , protocols::simple_filters::InterRepeatContactFilter , protocols::simple_filters::IntraRepeatContactFilter , protocols::simple_filters::LeastNativeLike9merFilter , protocols::simple_filters::PackStatFilter , protocols::simple_filters::RangeFilter , protocols::simple_filters::SaveResfileToDiskFilter , protocols::simple_filters::SecretionPredictionFilter , protocols::simple_filters::ShapeComplementarityFilter , protocols::simple_filters::SSElementLengthFilter , protocols::simple_filters::SSElementMotifContactFilter , protocols::simple_filters::TaskAwareSASAFilter
• FilterCOPs : protocols::denovo_design::movers::FoldArchitectMover
• FilterList : protocols::filters::CombinedFilter
• FilterMap : protocols::filters::FilterFactory
• FilterOP : protocols::calc_taskop_filters::ConservedPosMutationFilter , protocols::dna_dock::DNAClashCheckFilter , protocols::dna_dock::PropagateClashCheckFilter , protocols::enzdes::DiffAtomSasaFilter , protocols::enzdes::EnzdesScorefileFilter , protocols::enzdes::EnzScoreFilter , protocols::enzdes::LigBurialFilter , protocols::enzdes::LigDSasaFilter , protocols::enzdes::LigInterfaceEnergyFilter , protocols::enzdes::RemoveLigandFilter , protocols::enzdes::RepackWithoutLigandFilter , protocols::enzdes::ResidueConformerFilter , protocols::evolution::EvolutionaryDynamicsMover , protocols::fldsgn::filters::CoreDunbrackFilter , protocols::fldsgn::filters::FragQualFilter , protocols::fldsgn::filters::HelixKinkFilter , protocols::fldsgn::filters::HelixPairingFilter , protocols::fldsgn::filters::HSSTripletFilter , protocols::fldsgn::filters::InterlockingAromaFilter , protocols::fldsgn::filters::NcontactsFilter , protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter , protocols::fldsgn::filters::SecondaryStructureCountFilter , protocols::fldsgn::filters::SecondaryStructureFilter , protocols::fldsgn::filters::SecondaryStructureHasResidueFilter , protocols::fldsgn::filters::SheetTopologyFilter , protocols::fldsgn::filters::StrandCurvatureByLevels , protocols::indexed_structure_store::filters::FragmentLookupFilter , protocols::matdes::ClashCheckFilter , protocols::matdes::GetRBDOFValues , protocols::matdes::OligomericAverageDegreeFilter , protocols::matdes::SymUnsatHbondFilter , protocols::monte_carlo::GenericMonteCarloMover , protocols::moves::FilterMover , protocols::simple_ddg::SSElementBisectddGFilter , protocols::simple_filters::ContactMolecularSurfaceFilter , protocols::simple_filters::HolesFilter , protocols::simple_filters::InterRepeatContactFilter , protocols::simple_filters::IntraRepeatContactFilter , protocols::simple_filters::LeastNativeLike9merFilter , protocols::simple_filters::PackStatFilter , protocols::simple_filters::RangeFilter , protocols::simple_filters::SaveResfileToDiskFilter , protocols::simple_filters::SecretionPredictionFilter , protocols::simple_filters::ShapeComplementarityFilter , protocols::simple_filters::SSElementLengthFilter , protocols::simple_filters::SSElementMotifContactFilter , protocols::simple_filters::TaskAwareSASAFilter
• FilterStructsOP : protocols::flxbb::DesignTask , protocols::flxbb::DesignTask_Layer , protocols::flxbb::DesignTask_Normal , protocols::flxbb::FlxbbDesignPack
• FilterWeightPair : protocols::filters::CombinedFilter
• FiltPtr : protocols::constel::MasterFilter
• FirstClassNodeVector : core::pack::interaction_graph::BackgroundNode< V, E, G >
• FitnessFunctionOP : protocols::genetic_algorithm::GeneticAlgorithm
• FixbbRotamerSetsCOP : core::pack::annealer::FASTERAnnealer , core::pack::annealer::RotamerAssigningAnnealer
• FixedBBInteractionGraphCOP : protocols::pack_daemon::PackDaemon
• FixedBBInteractionGraphOP : protocols::pack_daemon::PackDaemon , protocols::pack_daemon::QuickRepacker
• FloatList : protocols::noesy_assign::FloatingResonance
• FoldScore : protocols::denovo_design::movers::FoldArchitectMover
• FoldTree : core::conformation::Conformation , protocols::nonlocal::SingleFragmentMover
• FoldTreeOP : core::conformation::Conformation , protocols::nonlocal::SingleFragmentMover
• FoldTreeSketch : protocols::environment::claims::CutBiasClaim , protocols::environment::claims::EnvClaim , protocols::environment::claims::TorsionClaim , protocols::environment::claims::VirtResClaim , protocols::environment::claims::XYZClaim , protocols::environment::EnvClaimBroker
• FormatList : protocols::sparta::GDB
• FragData : core::fragment::picking_old::vall::VallLibrarian
• FragDataOP : core::fragment::picking_old::vall::VallLibrarian
• FragDataOPs : core::fragment::picking_old::vall::VallLibrarian
• FragFileCache : core::fragment::FragmentIO
• FragMap : protocols::frags::FragLib
• FragmentLookupMap : protocols::indexed_structure_store::FragmentStoreManager
• FragmentLookupOP : protocols::indexed_structure_store::filters::FragmentLookupFilter
• FragmentLookupResult : protocols::indexed_structure_store::filters::FragmentLookupFilter
• FragmentMap : protocols::denovo_design::components::Picker
• FragmentMoverOP : protocols::forge::remodel::RemodelLoopMover
• FragmentMoverOPs : protocols::forge::remodel::RemodelLoopMover
• FragmentSpecification : protocols::indexed_structure_store::filters::FragmentLookupFilter
• FragRT : core::conformation::Conformation , core::kinematics::AtomTree
• FragSet : protocols::pose_metric_calculators::FragQualCalculator
• FragSetCOP : protocols::abinitio::DomainAssembly , protocols::forge::remodel::RemodelLoopMover , protocols::nonlocal::BiasedFragmentMover , protocols::nonlocal::Policy , protocols::nonlocal::SmoothPolicy , protocols::nonlocal::UniformPolicy
• FragSetList : core::fragment::FragSetCollection
• FragSetOP : protocols::abinitio::DomainAssembly , protocols::forge::remodel::RemodelLoopMover , protocols::nonlocal::SingleFragmentMover , protocols::parser::FragmentReader , protocols::pose_metric_calculators::FragQualCalculator
• FragSetOPs : protocols::forge::remodel::RemodelLoopMover
• FragXYZ : core::conformation::Conformation , core::kinematics::AtomTree
• Frame : protocols::nonlocal::SingleFragmentMover
• FrameList : protocols::forge::components::VarLengthBuild
• FrameMap : core::fragment::FragmentRmsd , core::fragment::MinimalFragSet , core::fragment::MinimalFragSetIterator_ , core::fragment::OrderedFragSet , core::fragment::OrderedFragSetIterator_ , protocols::nonlocal::BiasedFragmentMover , protocols::nonlocal::SingleFragmentMover
• FrameTypes : core::fragment::FragFactory
• FullModelInputSourcesAndInputters : protocols::jd3::full_model_inputters::FullModelInputterFactory
• FullModelInputterMap : protocols::jd3::full_model_inputters::FullModelInputterFactory
• FuncFactory : core::scoring::constraints::SequenceProfileConstraint , protocols::constraints_additional::SequenceCoupling1BDConstraint , protocols::constraints_additional::SequenceCouplingConstraint
• FuncTypes : core::scoring::func::FuncFactory
• FuzzyTopology : protocols::abinitio::StrandConstraints