- m -

• M : protocols::sic_dock::Rose
• Map : core::scoring::constraints::ResidueConstraints
• MappedAtoms : protocols::constraint_generator::AtomPairConstraintGenerator
• MappingType : protocols::qsar::scoring_grid::GridSet
• Mat : protocols::sic_dock::RigidScore
• MatchHash : protocols::match::MatchOutputTracker
• MatchList : protocols::canonical_sampling::AsyncMPITemperingBase
• MatchSet : protocols::match::HitHasher
• Matrix : core::conformation::symmetry::SymmData , core::energy_methods::RNA_StubCoordinateEnergy , core::kinematics::Jump , core::kinematics::RT , core::kinematics::Stub , core::kinematics::tree::Atom , core::scoring::dna::DNA_BasePotential , core::scoring::MultipoleElecResidueInfo , core::scoring::MultipoleParameter , core::scoring::symmetry::SymmetricEnergies , core::scoring::VdWTinkerResidueInfo , core::sequence::DP_Matrix
• matrix : protocols::evaluation::PCA
• Matrix : protocols::hotspot_hashing::StubGenerator , protocols::nmr::pcs::PCSLigandTransformMover , protocols::simple_moves::BBGaussianMover
• MC : protocols::sic_dock::Rose
• MCR : protocols::sic_dock::Rose
• MergeBehaviorMap : core::chemical::MergeBehaviorManager
• MethodWeights : core::scoring::methods::EnergyMethodOptions
• MethylNameTable : protocols::noesy_assign::MethylNameLibrary
• MetricValueBase : protocols::fldsgn::NcontactsCalculator , protocols::pose_metric_calculators::FragQualCalculator
• MetricValueGetterMap : protocols::multistate_design::MultiStateFitnessFunction
• MetricValueMap : protocols::multistate_design::SingleStateEntityData
• MinimizerOptionsCOP : protocols::minimization_packing::MinMover , protocols::normalmode::NormalModeMinimizer
• MinimizerOptionsOP : protocols::minimization_packing::MinMover , protocols::normalmode::NormalModeMinimizer
• MMAtomTypeSets : core::chemical::ChemicalManager
• MMLJScoreTable : core::scoring::mm::MMLJEnergyTable
• Model : protocols::abinitio::PairingStatEntry , protocols::abinitio::PairingStatistics
• ModelFreq : protocols::abinitio::PairingStatistics
• ModelList : protocols::abinitio::PairingStatEntry
• ModelWeight : protocols::abinitio::PairingStatistics
• Modified2Original : protocols::forge::build::BuildManager
• MonteCarlo : protocols::forge::remodel::RemodelLoopMover
• Motif : core::scoring::motif::MotifHash , protocols::denovo_design::architects::MotifArchitect , protocols::denovo_design::components::IdealAbegoGenerator
• MotifCOP : protocols::denovo_design::architects::MotifArchitect
• MotifCOPs : protocols::denovo_design::architects::MotifArchitect
• MotifMap : core::scoring::motif::MotifHash
• MotifOP : protocols::denovo_design::architects::MotifArchitect , protocols::denovo_design::components::IdealAbegoGenerator
• MotifOPs : protocols::denovo_design::components::IdealAbegoGenerator
• MovableGroupSet : protocols::denovo_design::connection::AreConnectablePredicate
• MovableGroupToSegmentNameListMap : protocols::denovo_design::components::FoldGraph
• MoveMap : core::fragment::IndependentBBTorsionSRFD , protocols::fldsgn::CircularPermutation , protocols::forge::build::Bridge , protocols::forge::build::BuildInstruction , protocols::forge::build::BuildManager , protocols::forge::build::ConnectRight , protocols::forge::build::GrowLeft , protocols::forge::build::GrowRight , protocols::forge::build::RelativeConnectRight , protocols::forge::build::SegmentInsert , protocols::forge::build::SegmentRebuild , protocols::forge::build::SegmentSwap , protocols::forge::components::VarLengthBuild , protocols::forge::remodel::RemodelAccumulator , protocols::forge::remodel::RemodelDesignMover , protocols::forge::remodel::RemodelGlobalFrame , protocols::forge::remodel::RemodelLigandHandler , protocols::forge::remodel::RemodelLoopMover
• MoveMapOP : protocols::fldsgn::CircularPermutation , protocols::flxbb::FlxbbDesign , protocols::forge::build::BuildManager , protocols::loops::loop_mover::LoopMover , protocols::nonlocal::Chunk , protocols::nonlocal::SingleFragmentMover , protocols::parser::BluePrint
• MoveMapTorsionID : core::kinematics::MoveMap
• MoveMapTorsionID_Map : core::kinematics::MoveMap
• Mover : protocols::fldsgn::MatchResidues , protocols::fldsgn::MatchResiduesMover , protocols::nonlocal::SingleFragmentMover
• moverclass : protocols::simple_moves::bin_transitions::InitializeByBins , protocols::simple_moves::bin_transitions::PerturbByBins
• MoverMap : protocols::moves::MoverFactory
• MoverOP : protocols::calc_taskop_movers::ConsensusDesignMover , protocols::enzdes::RemoveLigandFilter , protocols::evolution::EvolutionaryDynamicsMover , protocols::fldsgn::BluePrintBDR , protocols::fldsgn::CircularPermutation , protocols::fldsgn::MatchResidues , protocols::fldsgn::MatchResiduesMover , protocols::fldsgn::potentials::SetAACompositionPotential , protocols::fldsgn::potentials::SetSecStructEnergies , protocols::flxbb::DesignTask , protocols::flxbb::FlxbbDesign , protocols::flxbb::InterlockAroma , protocols::forge::components::BDR , protocols::forge::components::VarLengthBuild , protocols::forge::remodel::RemodelAccumulator , protocols::forge::remodel::RemodelDesignMover , protocols::forge::remodel::RemodelGlobalFrame , protocols::forge::remodel::RemodelLigandHandler , protocols::forge::remodel::RemodelLoopMover , protocols::forge::remodel::RemodelMover , protocols::match::MatcherMover , protocols::matdes::SymDofMover , protocols::minimization_packing::BoltzmannRotamerMover , protocols::minimization_packing::RotamerTrialsMover , protocols::monte_carlo::GenericMonteCarloMover , protocols::monte_carlo::MonteCarloRecover , protocols::monte_carlo::MonteCarloReset , protocols::monte_carlo::MonteCarloTest , protocols::moves::DsspMover , protocols::moves::FilterMover , protocols::nmr::pre::PREMover , protocols::nonlocal::SingleFragmentMover , protocols::pose_creation::MakePolyXMover , protocols::rosetta_scripts::RosettaScriptsParser , protocols::simple_moves::CoupledMover , protocols::simple_moves::ShortBackrubMover
• MoverOPs : protocols::denovo_design::movers::FoldArchitectMover
• MoverPassMap : protocols::environment::EnvClaimBroker
• MoverRealPair : protocols::protein_interface_design::movers::PlaceSimultaneouslyMover
• Movers : protocols::moves::CyclicMover
• MoverSet : protocols::abinitio::abscript::AbscriptMover , protocols::abinitio::abscript::AbscriptStageMover
• MultipoleParameterOP : core::scoring::MultipoleParameter
• Multivec : core::pack::scmin::CartSCMinMultifunc , core::pack::scmin::SCMinMultifunc , protocols::nmr::pcs::PCSTensorOptimizer , protocols::optimize_weights::OptEData , protocols::optimize_weights::OptEMultifunc , protocols::optimize_weights::OptEPositionData , protocols::optimize_weights::WrapperOptEMultifunc
• MutTyp : protocols::constel::SingResCnlCrea