- r -

• RamaScoreVector : protocols::loops::loop_closure::ccd::RamaCheckBase
• RBConfLists : protocols::enzdes::ModifyStoredRBConfs
• RCR : protocols::sic_dock::Rose
• RDC_lines : core::scoring::ResidualDipolarCoupling , core::scoring::ResidualDipolarCoupling_Rohl , protocols::scoring::ResidualDipolarCouplingRigidSegments
• RDC_Segments : protocols::scoring::ResidualDipolarCouplingRigidSegments
• RDFFunctionCreatorMap : protocols::ligand_docking::rdf::RDFFunctionFactory
• Real : core::fragment::picking_old::vall::eval::ABEGOEval , core::fragment::picking_old::vall::eval::EnergyEval , core::fragment::picking_old::vall::eval::IdentityEval , core::fragment::picking_old::vall::scores::VallFragmentScore , core::fragment::picking_old::vall::VallResidue , core::pose::PDBInfo , core::scoring::constraints::MembraneSpanConstraint , core::scoring::constraints::MembraneSpanTermZConstraint , core::scoring::constraints::NonResidueTypeConstraint , core::scoring::constraints::ResidueCouplingConstraint , core::scoring::constraints::ResidueTypeConstraint , core::scoring::constraints::ResidueTypeLinkingConstraint , core::scoring::ResidualDipolarCoupling , core::scoring::ResidualDipolarCoupling_Rohl , core::select::util::SelectResiduesByLayer , core::sequence::ABEGO , core::sequence::ABEGOManager , protocols::dna_dock::DNAClashCheckFilter , protocols::dna_dock::PropagateClashCheckFilter , protocols::docking::DockingHighRes , protocols::docking::DockingHighResLegacy , protocols::docking::DockMCMCycle , protocols::docking::DockMCMProtocol , protocols::enzdes::ModifyStoredRBConfs , protocols::evolution::EvolutionaryDynamicsMover , protocols::fldsgn::BluePrintBDR , protocols::fldsgn::filters::CoreDunbrackFilter , protocols::fldsgn::filters::FragQualFilter , protocols::fldsgn::filters::HelixKinkFilter , protocols::fldsgn::filters::HelixPairingFilter , protocols::fldsgn::filters::HSSTripletFilter , protocols::fldsgn::filters::InterlockingAromaFilter , protocols::fldsgn::filters::NcontactsFilter , protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter , protocols::fldsgn::filters::StrandCurvatureByLevels , protocols::fldsgn::MatchResidues , protocols::fldsgn::MatchResiduesMover , protocols::fldsgn::NcontactsCalculator , protocols::fldsgn::potentials::AACompositionEnergy , protocols::fldsgn::potentials::SetAACompositionPotential , protocols::fldsgn::potentials::SetSecStructEnergies , protocols::fldsgn::potentials::sspot::HSPairPotential , protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential , protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy , protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential , protocols::fldsgn::potentials::sspot::SSPairPotential , protocols::fldsgn::SheetConstraintGenerator , protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::BetaAlphaBetaMotifSet , protocols::fldsgn::topology::DimerPairing , protocols::fldsgn::topology::HelixPairing , protocols::fldsgn::topology::HSSTriplet , protocols::fldsgn::topology::Sheet , protocols::fldsgn::topology::SheetSet , protocols::fldsgn::topology::SS_Base , protocols::fldsgn::topology::StrandPairing , protocols::fldsgn::topology::StrandPairingSet , protocols::flexpack::interaction_graph::FlexbbEdge , protocols::flexpack::interaction_graph::MinimalistFlexbbEdge , protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph , protocols::flexpack::interaction_graph::OTFFlexbbNode , protocols::flxbb::FilterStructs , protocols::flxbb::FilterStructs_Packstat , protocols::flxbb::FilterStructs_TotalCharge , protocols::flxbb::FlxbbDesign , protocols::flxbb::InterlockAroma , protocols::flxbb::LayerDesignOperation , protocols::forge::build::Bridge , protocols::forge::build::BuildInstruction , protocols::forge::build::SegmentInsert , protocols::forge::build::SegmentRebuild , protocols::forge::components::BDR , protocols::forge::components::VarLengthBuild , protocols::forge::constraints::NtoCConstraintGenerator , protocols::forge::constraints::RemoveRemodelCsts , protocols::forge::remodel::RemodelAccumulator , protocols::forge::remodel::RemodelDesignMover , protocols::forge::remodel::RemodelGlobalFrame , protocols::forge::remodel::RemodelLigandHandler , protocols::forge::remodel::RemodelLoopMover , protocols::forge::remodel::RemodelMover , protocols::frags::FragLib , protocols::frags::SingleResidueTorsionFragmentLibrary , protocols::frags::TorsionFragment , protocols::frags::TorsionFragmentLibrary , protocols::frags::TorsionFragmentMover , protocols::idealize::IdealizeMover , protocols::indexed_structure_store::filters::FragmentLookupFilter , protocols::loophash::FastGapMover , protocols::match::Bool3DGrid , protocols::match::Bool3DGridKinemageWriter , protocols::match::BumpGrid , protocols::match::downstream::ActiveSiteGrid , protocols::match::downstream::AtomGeometrySecMatchRPE , protocols::match::downstream::ClassicMatchAlgorithm , protocols::match::downstream::DownstreamBuilder , protocols::match::downstream::SecMatchEvaluatorFactory , protocols::match::downstream::SecMatchResiduePairEvaluator , protocols::match::HitHasher , protocols::match::HitNeighborFinder , protocols::match::MatchCounter , protocols::match::Matcher , protocols::match::MatcherMover , protocols::match::MatcherTask , protocols::match::OccupiedSpaceHash , protocols::match::output::BestMatchesCollection , protocols::match::output::MatchCollisionFilter , protocols::match::output::MatchConsolidator , protocols::match::output::MatchEvaluator , protocols::match::output::MatchGrouper , protocols::match::output::ProcessorFactory , protocols::match::output::SameChiBinComboGrouper , protocols::match::output::SameRotamerComboGrouper , protocols::match::output::SameSequenceGrouper , protocols::match::output::UpstreamCollisionFilter , protocols::match::output::UpstreamDownstreamCollisionFilter , protocols::match::upstream::BuildSet , protocols::match::upstream::FullChiSampleSet , protocols::match::upstream::ProteinBackboneBuildPoint , protocols::match::upstream::ProteinUpstreamBuilder , protocols::match::upstream::SampleStrategyData , protocols::match::upstream::UpstreamResTypeGeometry , protocols::match::VoxelSetIterator , protocols::matdes::ClashCheckFilter , protocols::matdes::GetRBDOFValues , protocols::matdes::OligomericAverageDegreeFilter , protocols::matdes::SymDofMover , protocols::matdes::SymDofMoverSampler , protocols::matdes::SymUnsatHbondFilter , protocols::minimization_packing::GreenPacker , protocols::minimization_packing::MinimalRotamer , protocols::minimization_packing::MinMover , protocols::monte_carlo::GenericMonteCarloMover , protocols::monte_carlo::MonteCarloRecover , protocols::monte_carlo::MonteCarloReset , protocols::monte_carlo::MonteCarloTest , protocols::motifs::LigandMotifSearch , protocols::motifs::MotifSearch , protocols::moves::MonteCarlo , protocols::moves::RampingFunc , protocols::moves::TrialMover , protocols::nmr::pcs::PCSEnergy , protocols::nmr::pcs::PCSLigandTransformMover , protocols::nmr::pcs::PCSTensorOptimizer , protocols::nmr::pre::PREDistanceRecord , protocols::nmr::pre::PREEnergy , protocols::nmr::pre::PREMover , protocols::nmr::rdc::RDCEnergy , protocols::nonlocal::SingleFragmentMover , protocols::normalmode::NormalModeMinimizer , protocols::optimize_weights::IterativeOptEDriver , protocols::optimize_weights::OptEData , protocols::optimize_weights::OptEMultifunc , protocols::optimize_weights::OptEPositionData , protocols::optimize_weights::PNatAAOptERotamerData , protocols::optimize_weights::PNatRotOptERotamerData , protocols::optimize_weights::SingleStructureData , protocols::optimize_weights::WrapperOptEMultifunc , protocols::pack_daemon::MultistateFitnessFunction , protocols::pack_daemon::PackDaemon , protocols::parser::BluePrint , protocols::pose_metric_calculators::FragQualCalculator , protocols::protein_interface_design::FavorNativeResidue , protocols::protein_interface_design::FavorNonNativeResidue , protocols::protein_interface_design::filters::HbondsToAtomFilter , protocols::protein_interface_design::filters::HbondsToResidueFilter , protocols::protein_interface_design::filters::RelativeSegmentFilter , protocols::protein_interface_design::movers::RepackMinimize , protocols::protein_interface_design::ReportPSSMDifferences , protocols::protein_interface_design::ReportSequenceDifferences , protocols::protein_interface_design::Transformation , protocols::qsar::scoring_grid::PCSMultiGrid , protocols::qsar::scoring_grid::PCSSingleGrid , protocols::recces::scratch::ThermalMinimizer , protocols::recces::scratch::ThermalSamplingMover , protocols::rosetta_scripts::ParsedProtocol , protocols::scoring::Interface , protocols::scoring::ResidualDipolarCouplingRigidSegments , protocols::sic_dock::RigidScore , protocols::sic_dock::Rose , protocols::simple_ddg::ddG , protocols::simple_ddg::SSElementBisectddGFilter , protocols::simple_filters::ContactMolecularSurfaceFilter , protocols::simple_filters::HolesFilter , protocols::simple_filters::InterRepeatContactFilter , protocols::simple_filters::IntraRepeatContactFilter , protocols::simple_filters::LeastNativeLike9merFilter , protocols::simple_filters::PackStatFilter , protocols::simple_filters::RangeFilter , protocols::simple_filters::SaveResfileToDiskFilter , protocols::simple_filters::SecretionPredictionFilter , protocols::simple_filters::ShapeComplementarityFilter , protocols::simple_filters::SSElementLengthFilter , protocols::simple_filters::SSElementMotifContactFilter , protocols::simple_filters::TaskAwareSASAFilter , protocols::simple_moves::BackboneMover , protocols::simple_moves::BBGaussianMover , protocols::simple_moves::DME_FilterMover , protocols::splice::SampleRotamersFromPDB , protocols::splice::SampleRotamersFromPDB_RotamerSetOperation , protocols::symmetric_docking::SymDockingHiRes , protocols::symmetric_docking::SymDockingLowRes , protocols::task_operations::ImportUnboundRotamersOperation , protocols::task_operations::JointSequenceOperation , protocols::task_operations::LimitAromaChi2_RotamerSetOperation , protocols::task_operations::LimitAromaChi2Operation , protocols::task_operations::RestrictNativeResiduesOperation , protocols::task_operations::SeqprofConsensusOperation , protocols::toolbox::match_enzdes_util::ExternalGeomSampler , protocols::toolbox::match_enzdes_util::LigandConformer , protocols::toolbox::rotamer_set_operations::AddGood2BPairEnergyRotamers , protocols::toolbox::rotamer_set_operations::SpecialRotamerRSO , Transformation
• Real3 : protocols::match::HitHasher , protocols::match::OccupiedSpaceHash , protocols::match::VoxelSetIterator
• Real6 : protocols::match::OccupiedSpaceHash , protocols::toolbox::match_enzdes_util::LigandConformer
• Reals : protocols::sic_dock::RigidScore
• RealVector3D : core::scoring::nmr::pre::PREMultiSet
• reference : core::id::AtomID_Map< T >
• Reference : core::id::AtomID_Map< T >
• reference : core::id::DOF_ID_Map< T >
• Reference : core::id::DOF_ID_Map< T >
• reference : core::id::NamedAtomID_Map< T >
• Reference : core::id::NamedAtomID_Map< T >
• reference : core::io::silent::SilentFileData::const_iterator , core::io::silent::SilentFileData::iterator , protocols::mean_field::jagged_array< T, A >
• Reference : protocols::mean_field::jagged_array< T, A >
• reference : protocols::toolbox::OP_const_iterator< const_iterator, SomeOP >
• RegisterShift : protocols::denovo_design::architects::BetaSheetArchitect , protocols::denovo_design::architects::StrandArchitect , protocols::denovo_design::movers::FoldArchitectMover
• RegisterShifts : protocols::denovo_design::architects::BetaSheetArchitect , protocols::denovo_design::architects::StrandArchitect
• Remarks : core::pose::PDBInfo
• RemodelConstraintGeneratorOP : protocols::forge::components::VarLengthBuild
• RemodelData : protocols::forge::components::VarLengthBuild , protocols::forge::remodel::RemodelAccumulator , protocols::forge::remodel::RemodelDesignMover , protocols::forge::remodel::RemodelGlobalFrame , protocols::forge::remodel::RemodelMover
• RemodelWorkingSet : protocols::forge::remodel::RemodelDesignMover , protocols::forge::remodel::RemodelGlobalFrame , protocols::forge::remodel::RemodelMover
• RepresentativeOutputterMap : protocols::jd3::chunk_library::ChunkLibraryJobQueen , protocols::jd3::full_model::FullModelJobQueen
• ResAtomIndex : core::scoring::custom_pair_distance::FullatomCustomPairDistanceEnergy , core::scoring::custom_pair_distance::RespairInteractions
• ResAtomIndexFuncMap : core::scoring::custom_pair_distance::FullatomCustomPairDistanceEnergy , core::scoring::custom_pair_distance::RespairInteractions
• ResAtomIndexTuple : core::scoring::custom_pair_distance::FullatomCustomPairDistanceEnergy , core::scoring::custom_pair_distance::RespairInteractions
• ResConnID : core::conformation::PseudoBond
• ResElemVect : protocols::environment::EnvClaimBroker
• ResfileContentsOP : protocols::pack_daemon::DaemonSet
• ResFilterCreatorMap : core::pack::task::operation::ResFilterFactory
• ResHash : protocols::mean_field::ResHashMap
• ResIDList : protocols::pack_daemon::EntityCorrespondence
• ResidList : protocols::sparta::Sparta::SpartaLib
• ResIDListConstIter : protocols::pack_daemon::EntityCorrespondence
• Resids : protocols::denovo_design::components::ExtendedPoseBuilder
• ResidualDipolarCoupling : protocols::scoring::ResidualDipolarCouplingRigidSegments
• Residue : core::chemical::ICoorAtomID , core::energy_methods::RNA_CoarseDistEnergy , core::pack::dunbrack::cenrot::CenrotLibrary , core::pack::dunbrack::RotamerLibrary , core::pose::Pose , core::scoring::constraints::Constraints , core::scoring::constraints::ConstraintSet , core::scoring::dna::DNA_BasePotential , core::scoring::facts::FACTSPoseInfo , core::scoring::facts::FACTSPotential , core::scoring::facts::FACTSResidueInfo , core::scoring::facts::FACTSRotamerSetInfo , core::scoring::func::FourPointsFunc , core::scoring::func::XYZ_Func , core::scoring::GenBornPoseInfo , core::scoring::GenBornPotential , core::scoring::GenBornResidueInfo , core::scoring::GenBornRotamerSetInfo , core::scoring::MinimizationEdge , core::scoring::MinimizationNode , core::scoring::MultipoleElecPoseInfo , core::scoring::MultipoleElecPotential , core::scoring::MultipoleElecResidueInfo , core::scoring::MultipoleElecRotamerSetInfo , core::scoring::SASAPotential , core::scoring::VdWTinkerPoseInfo , core::scoring::VdWTinkerPotential , core::scoring::VdWTinkerResidueInfo , core::scoring::VdWTinkerRotamerSetInfo , core::scoring::WaterAdductHBondPotential , protocols::dna::PDBOutput , protocols::fldsgn::NcontactsCalculator , protocols::fldsgn::potentials::AACompositionEnergy , protocols::flexpack::interaction_graph::OTFFlexbbEdge , protocols::flexpack::interaction_graph::OTFFlexbbNode , protocols::minimization_packing::MinimalRotamer , protocols::nmr::pcs::PCSLigandTransformMover , protocols::protein_interface_design::movers::MapHotspot , protocols::protein_interface_design::movers::TryRotamers , protocols::qsar::scoring_grid::PCSMultiGrid , protocols::qsar::scoring_grid::PCSSingleGrid , protocols::simple_moves::BBGaussianMover
• residue_series : core::kinematics::jacobian::SeriesJacobians
• ResidueAuction : protocols::protein_interface_design::movers::PlacementAuctionMover , protocols::protein_interface_design::movers::PlaceSimultaneouslyMover
• ResidueAuctionItem : protocols::protein_interface_design::movers::PlacementAuctionMover , protocols::protein_interface_design::movers::PlaceSimultaneouslyMover
• ResidueCoords : core::io::StructFileRep
• ResidueCOP : core::pack::rotamer_set::RotamerSet_ , core::pack::rotamer_set::RotamerSubset , protocols::flexpack::interaction_graph::OTFFlexbbNode
• ResidueDDGs : protocols::calc_taskop_filters::RotamerBoltzmannWeight2
• ResidueFeatureTypes : protocols::comparative_modeling::features::ResidueFeatureFactory
• ResidueIndices : core::pack::task::operation::OperateOnCertainResidues
• ResidueList : protocols::noesy_assign::PeakAssignmentResidueMap , protocols::sparta::GDB
• ResidueMap : core::id::AtomID_Map< T > , core::id::NamedAtomID_Map< T > , protocols::noesy_assign::ResonanceList
• ResidueMatcherCOP : core::pack::rotamer_set::RotamerCouplings
• ResidueMergeInstructions : core::chemical::MergeBehaviorManager
• ResidueOP : core::pack::rotamer_set::RotamerSet_ , core::pack::rotamer_set::RotamerSubset , core::scoring::facts::FACTSPoseInfo , core::scoring::facts::FACTSRotamerSetInfo , core::scoring::GenBornPoseInfo , core::scoring::GenBornRotamerSetInfo , core::scoring::MultipoleElecPoseInfo , core::scoring::MultipoleElecRotamerSetInfo , core::scoring::VdWTinkerPoseInfo , core::scoring::VdWTinkerRotamerSetInfo
• ResiduePairConstraints : core::scoring::constraints::ConstraintSet
• ResiduePairConstraintsIterator : core::scoring::constraints::ConstraintSet
• ResiduePairing : protocols::fldsgn::filters::SheetTopologyFilter
• ResiduePairingSet : protocols::fldsgn::filters::SheetTopologyFilter
• ResiduePairingSets : protocols::fldsgn::filters::SheetTopologyFilter
• ResidueRanges : protocols::denovo_design::residue_selectors::NamedSegmentSelector
• ResidueRecords : core::pose::PDBInfo
• Residues : protocols::denovo_design::movers::RotateSegmentMover
• ResidueSelector : protocols::environment::claims::JumpClaim
• ResidueSelectorCOP : protocols::environment::claims::EnvClaim , protocols::environment::claims::JumpClaim , protocols::environment::claims::TorsionClaim , protocols::environment::claims::XYZClaim , protocols::pose_creation::MakePolyXMover , protocols::pose_creation::MergePDBMover , protocols::pose_creation::SliceToMiniProteinMover
• ResidueSelectorCOPs : protocols::denovo_design::movers::AlignResiduesMover
• ResidueSelectorOP : core::select::residue_selector::AsymmetricUnitSelector , core::select::residue_selector::CloseContactResidueSelector , core::select::residue_selector::DensityFitResidueSelector , core::select::residue_selector::GlycanLayerSelector , core::select::residue_selector::GlycanSequonsSelector , core::select::residue_selector::LogicResidueSelector , core::select::residue_selector::RandomGlycanFoliageSelector , core::select::residue_selector::ResidueInSequenceMotifSelector , core::select::residue_selector::ResiduePropertySelector , core::select::residue_selector::ReturnResidueSubsetSelector , protocols::antibody::design::ResnumFromStringsWithRangesSelector , protocols::cyclic_peptide::RamaMutationSelector , protocols::denovo_design::residue_selectors::NamedSegmentSelector , protocols::denovo_design::residue_selectors::PairedSheetResidueSelector , protocols::environment::claims::XYZClaim , protocols::pose_creation::MakePolyXMover , protocols::pose_creation::MergePDBMover , protocols::pose_creation::SliceToMiniProteinMover , protocols::residue_selectors::LigandMetalContactSelector
• ResidueSpan : protocols::indexed_structure_store::FragmentLookup
• ResidueSubset : core::select::residue_selector::AsymmetricUnitSelector , core::select::residue_selector::CloseContactResidueSelector , core::select::residue_selector::DensityFitResidueSelector , core::select::residue_selector::GlycanLayerSelector , core::select::residue_selector::GlycanSequonsSelector , core::select::residue_selector::LogicResidueSelector , core::select::residue_selector::RandomGlycanFoliageSelector , core::select::residue_selector::ResidueInSequenceMotifSelector , core::select::residue_selector::ResiduePropertySelector , core::select::residue_selector::ReturnResidueSubsetSelector , protocols::antibody::design::ResnumFromStringsWithRangesSelector , protocols::cyclic_peptide::RamaMutationSelector , protocols::denovo_design::residue_selectors::NamedSegmentSelector , protocols::denovo_design::residue_selectors::PairedSheetResidueSelector , protocols::environment::claims::EnvLabelSelector , protocols::residue_selectors::LigandMetalContactSelector
• ResidueSubsetMap : core::select::residue_selector::CachedResidueSubset
• ResidueTemps : core::io::StructFileRep
• ResidueType : core::conformation::Residue , core::pack::dunbrack::cenrot::CenrotLibrary , core::pack::dunbrack::RotamerLibrary , core::pack::rotamer_set::WaterAnchorInfo , core::scoring::lkball::LK_BallEnergy , protocols::minimization_packing::MinimalRotamer
• ResidueTypeConstraint : protocols::constraint_movers::ResidueTypeConstraintMover
• ResidueTypeCOP : core::conformation::Residue , core::scoring::nmr::NMRSpinlabel
• ResidueTypeCOPList : core::pack::task::ResidueLevelTask
• ResidueTypeCOPListConstIter : core::pack::task::ResidueLevelTask
• ResidueTypeCOPListIter : core::pack::task::ResidueLevelTask
• ResidueTypeOP : core::scoring::nmr::NMRSpinlabel
• ResidueTypeSet : protocols::forge::build::BuildInstruction
• ResidueTypeSetCAP : protocols::forge::build::Bridge , protocols::forge::build::BuildInstruction , protocols::forge::build::ConnectRight , protocols::forge::build::GrowLeft , protocols::forge::build::GrowRight , protocols::forge::build::RelativeConnectRight , protocols::forge::build::SegmentInsert , protocols::forge::build::SegmentRebuild , protocols::forge::build::SegmentSwap
• ResidueTypeSetCOP : protocols::forge::build::BuildInstruction
• ResidueVector : protocols::denovo_design::architects::BetaSheetArchitect , protocols::denovo_design::movers::FoldArchitectMover
• ResidueVectors : protocols::denovo_design::movers::AlignResiduesMover
• ResMap : core::scoring::motif::MotifHits
• ResonanceAPs : protocols::noesy_assign::Resonance
• ResonanceIDs : protocols::noesy_assign::Resonance , protocols::noesy_assign::ResonanceList
• ResonancePair : protocols::noesy_assign::Resonance
• ResonancePairs : protocols::noesy_assign::Resonance
• Resonances : protocols::noesy_assign::ResonanceList
• ResPairMinimizationData : core::energy_methods::RNA_CoarseDistEnergy
• Restraints : protocols::ligand_docking::UnconstrainedTorsionsMover
• ResTypePair : core::scoring::custom_pair_distance::PairFuncMap
• RestypeToTemplateAtomsMap : protocols::toolbox::match_enzdes_util::EnzCstTemplateRes
• reverse_iterator : protocols::mean_field::jagged_array< T, A >
• ReverseIterator : protocols::mean_field::jagged_array< T, A >
• RLTOC_Map : core::pack::task::operation::ResLvlTaskOperationFactory
• RosettaScriptsParserOP : protocols::jd2::JobDistributor
• RotamerAssignment : protocols::pack_daemon::PackDaemon
• RotamerAssignmentAndEnergy : protocols::pack_daemon::PackDaemon , protocols::pack_daemon::QuickRepacker
• RotamerComboCountMap : protocols::match::output::LimitHitsPerRotamerFilter , protocols::match::output::SameRotamerComboGrouper
• RotamerCouplingsCOP : core::pack::annealer::FixbbCoupledRotamerSimAnnealer , core::pack::task::PackerTask
• RotamerCouplingsOP : core::pack::annealer::FixbbCoupledRotamerSimAnnealer
• RotamerIndex : protocols::mean_field::ResHashMap
• RotamerLibrary : core::pack::dunbrack::DunbrackEnergy
• RotamerLinksCOP : core::pack::annealer::FixbbLinkingRotamerSimAnnealer , core::pack::task::PackerTask
• RotamerLinksOP : core::pack::annealer::FixbbLinkingRotamerSimAnnealer
• RotamerList : protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover
• Rotamers : protocols::splice::SampleRotamersFromPDB_RotamerSetOperation , protocols::task_operations::LimitAromaChi2_RotamerSetOperation
• RotamerSet : core::scoring::facts::FACTSRotamerSetInfo , protocols::splice::SampleRotamersFromPDB_RotamerSetOperation , protocols::task_operations::LimitAromaChi2_RotamerSetOperation
• RotamerSetBase : core::energy_methods::RNA_CoarseDistEnergy , core::scoring::GenBornRotamerSetInfo , core::scoring::MultipoleElecRotamerSetInfo , core::scoring::VdWTinkerRotamerSetInfo
• RotamerSetCOP : core::pack::annealer::FixbbCoupledRotamerSimAnnealer , core::pack::annealer::FixbbLinkingRotamerSimAnnealer
• RotamerSetOP : protocols::protein_interface_design::movers::MapHotspot , protocols::protein_interface_design::movers::TryRotamers
• RotamerSetOperationOP : protocols::splice::SampleRotamersFromPDB_RotamerSetOperation , protocols::task_operations::LimitAromaChi2_RotamerSetOperation
• RotamerSets : protocols::minimization_packing::GreenPacker , protocols::pack_daemon::PackDaemon
• RotamerSetsBaseCOP : core::pack::annealer::SimAnnealerBase
• RotamerSetsCOP : core::pack::annealer::FixbbCoupledRotamerSimAnnealer , core::pack::annealer::FixbbLinkingRotamerSimAnnealer , protocols::minimization_packing::PackRotamersMover , protocols::minimization_packing::RotamerizeMover , protocols::pack_daemon::PackDaemon
• RotamerSetsOP : protocols::minimization_packing::GreenPacker , protocols::minimization_packing::PackRotamersMover , protocols::minimization_packing::RotamerizeMover , protocols::pack_daemon::PackDaemon , protocols::pack_daemon::QuickRepacker
• RotamerSetVector : core::pack::rotamer_set::FixbbRotamerSets
• RotamersForAA : core::pack::rotamer_set::ContinuousRotamerSet
• RotamerSubsetsOP : protocols::pack_daemon::RotamerSubsetRepacker
• RotamerTrieBaseOP : core::pack::rotamer_set::RotamerSet_ , core::pack::rotamer_set::RotamerSubset
• Row : core::sequence::DP_Matrix
• RRComparerCreatorMap : protocols::rotamer_recovery::RotamerRecoveryFactory
• RRProtocolCreatorMap : protocols::rotamer_recovery::RotamerRecoveryFactory
• RRReporterCreatorMap : protocols::rotamer_recovery::RotamerRecoveryFactory
• RT : protocols::forge::build::ConnectRight
• rvec : core::scoring::ResidualDipolarCoupling , protocols::evaluation::PCA
• rvec5 : core::scoring::ResidualDipolarCoupling