- t -

• t_predicate_func : protocols::flexpep_docking::FlexPepDockingPoseMetrics
• Tag : core::pack::palette::PackerPaletteFactory , core::pack::task::operation::ResFilterFactory , core::pack::task::operation::ResLvlTaskOperationFactory , core::pack::task::operation::TaskOperationFactory , protocols::filters::FilterFactory , protocols::jd3::chunk_library_inputters::ChunkLibraryInputterFactory , protocols::jd3::full_model_inputters::FullModelInputterFactory , protocols::jd3::pose_inputters::PoseInputterFactory , protocols::jd3::pose_outputters::PoseOutputterFactory , protocols::moves::MoverFactory , protocols::parser::FragmentReader , protocols::qsar::scoring_grid::GridFactory , protocols::rna::movers::ErraserMinimizerMover , protocols::rosetta_scripts::PosePropertyReporterFactory , protocols::rosetta_scripts::PoseSelectorFactory
• TagCOP : core::pack::palette::PackerPaletteFactory , core::pack::task::operation::OperateOnCertainResidues , core::pack::task::operation::OperateOnResidueSubset , core::pack::task::operation::ResFilter , core::pack::task::operation::ResFilterFactory , core::pack::task::operation::ResLvlTaskOperation , core::pack::task::operation::ResLvlTaskOperationFactory , core::pack::task::operation::TaskOperation , core::pack::task::operation::TaskOperationFactory , protocols::dna::DnaInterfaceMinMover , protocols::dna::DnaInterfacePacker , protocols::dna_dock::DNAClashCheckFilter , protocols::dna_dock::PropagateClashCheckFilter , protocols::evolution::EvolutionaryDynamicsMover , protocols::filters::FilterFactory , protocols::fldsgn::BluePrintBDR , protocols::fldsgn::CircularPermutation , protocols::fldsgn::filters::CoreDunbrackFilter , protocols::fldsgn::filters::FragQualFilter , protocols::fldsgn::filters::HelixKinkFilter , protocols::fldsgn::filters::HelixPairingFilter , protocols::fldsgn::filters::HSSTripletFilter , protocols::fldsgn::filters::InterlockingAromaFilter , protocols::fldsgn::filters::NcontactsFilter , protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter , protocols::fldsgn::filters::SecondaryStructureCountFilter , protocols::fldsgn::filters::SecondaryStructureFilter , protocols::fldsgn::filters::SecondaryStructureHasResidueFilter , protocols::fldsgn::filters::SheetTopologyFilter , protocols::fldsgn::filters::StrandCurvatureByLevels , protocols::fldsgn::MatchResidues , protocols::fldsgn::MatchResiduesMover , protocols::fldsgn::potentials::SetAACompositionPotential , protocols::fldsgn::potentials::SetSecStructEnergies , protocols::flxbb::FlxbbDesign , protocols::flxbb::InterlockAroma , protocols::flxbb::LayerDesignOperation , protocols::forge::remodel::RemodelLoopMover , protocols::forge::remodel::RemodelMover , protocols::jd3::chunk_library_inputters::ChunkLibraryInputterFactory , protocols::jd3::full_model_inputters::FullModelInputterFactory , protocols::jd3::pose_inputters::PoseInputterFactory , protocols::jd3::pose_outputters::PoseOutputterFactory , protocols::match::MatcherMover , protocols::matdes::ClashCheckFilter , protocols::matdes::GetRBDOFValues , protocols::matdes::OligomericAverageDegreeFilter , protocols::matdes::SymDofMover , protocols::matdes::SymUnsatHbondFilter , protocols::monte_carlo::GenericMonteCarloMover , protocols::monte_carlo::MonteCarloRecover , protocols::monte_carlo::MonteCarloReset , protocols::monte_carlo::MonteCarloTest , protocols::moves::DsspMover , protocols::moves::Mover , protocols::moves::MoverFactory , protocols::parser::FragmentReader , protocols::pose_creation::MakePolyXMover , protocols::pose_metric_calculators::FragQualCalculator , protocols::qsar::scoring_grid::GridFactory , protocols::rosetta_scripts::PosePropertyReporterFactory , protocols::rosetta_scripts::PoseSelectorFactory , protocols::rosetta_scripts::RosettaScriptsParser , protocols::simple_ddg::SSElementBisectddGFilter , protocols::simple_filters::ContactMolecularSurfaceFilter , protocols::simple_filters::HolesFilter , protocols::simple_filters::InterRepeatContactFilter , protocols::simple_filters::IntraRepeatContactFilter , protocols::simple_filters::LeastNativeLike9merFilter , protocols::simple_filters::PackStatFilter , protocols::simple_filters::RangeFilter , protocols::simple_filters::SaveResfileToDiskFilter , protocols::simple_filters::SecretionPredictionFilter , protocols::simple_filters::ShapeComplementarityFilter , protocols::simple_filters::SSElementLengthFilter , protocols::simple_filters::SSElementMotifContactFilter , protocols::simple_filters::TaskAwareSASAFilter , protocols::splice::SampleRotamersFromPDB , protocols::task_operations::ImportUnboundRotamersOperation , protocols::task_operations::JointSequenceOperation , protocols::task_operations::LimitAromaChi2Operation , protocols::task_operations::LinkResidues , protocols::task_operations::RestrictNativeResiduesOperation , protocols::task_operations::SeqprofConsensusOperation
• TagCOPs : protocols::rosetta_scripts::RosettaScriptsParser
• TagList : protocols::toolbox::KClusterData
• TagOP : core::pack::palette::PackerPaletteFactory , core::pack::task::operation::ResFilterFactory , core::pack::task::operation::TaskOperationFactory
• TagPtr : protocols::indexed_structure_store::filters::FragmentLookupFilter
• Tags : protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD
• TargetValues : protocols::noesy_assign::PeakCalibrator
• task_iterator : protocols::task_operations::StoreCompoundTaskMover
• TaskFactory : protocols::minimization_packing::GreenPacker
• TaskFactoryCOP : protocols::minimization_packing::BoltzmannRotamerMover , protocols::minimization_packing::MinPackMover , protocols::minimization_packing::PackRotamersMover , protocols::minimization_packing::RotamerizeMover , protocols::minimization_packing::RotamerTrialsMinMover , protocols::minimization_packing::RotamerTrialsMover , protocols::switches::GraftSwitchMover
• TaskFactoryOP : protocols::constraint_movers::AddConstraintsToCurrentConformationMover , protocols::enzdes::PackRotamersMoverPartGreedy , protocols::evolution::EvolutionaryDynamicsMover , protocols::forge::components::BDR , protocols::forge::remodel::RemodelMover , protocols::minimization_packing::GreenPacker , protocols::monte_carlo::GenericMonteCarloMover , protocols::switches::GraftSwitchMover
• TaskLayer : protocols::flxbb::LayerDesignOperation
• TaskLayers : protocols::flxbb::LayerDesignOperation
• TaskOperation : core::pack::task::operation::ReplicateTask , core::pack::task::TaskFactory , protocols::dna::RestrictDesignToProteinDNAInterface , protocols::dna::WatsonCrickRotamerCouplings , protocols::flxbb::FlxbbDesign , protocols::flxbb::LayerDesignOperation , protocols::forge::remodel::RemodelRotamerLinks , protocols::simple_task_operations::DockingNoRepack1 , protocols::simple_task_operations::DockingNoRepack2 , protocols::simple_task_operations::InterfaceTaskOperation , protocols::simple_task_operations::RestrictToInterface , protocols::splice::SampleRotamersFromPDB , protocols::task_operations::ImportUnboundRotamersOperation , protocols::task_operations::JointSequenceOperation , protocols::task_operations::LimitAromaChi2Operation , protocols::task_operations::LinkResidues , protocols::task_operations::RestrictNativeResiduesOperation , protocols::task_operations::RestrictOperationsBase , protocols::task_operations::SeqprofConsensusOperation
• TaskOperationCOP : core::pack::task::TaskFactory
• TaskOperationCreatorMap : core::pack::task::operation::TaskOperationFactory
• TaskOperationOP : core::pack::task::operation::NoRepackDisulfides , core::pack::task::operation::OptCysHG , core::pack::task::operation::OptH , core::pack::task::operation::ReplicateTask , core::pack::task::TaskFactory , protocols::dna::RestrictDesignToProteinDNAInterface , protocols::dna::WatsonCrickRotamerCouplings , protocols::enzdes::AddLigandMotifRotamers , protocols::enzdes::AddRigidBodyLigandConfs , protocols::enzdes::DetectProteinLigandInterface , protocols::enzdes::ProteinLigandInterfaceUpweighter , protocols::enzdes::SetCatalyticResPackBehavior , protocols::flxbb::CombinedTaskOperation , protocols::flxbb::DesignTask , protocols::flxbb::FlxbbDesign , protocols::flxbb::LayerDesignOperation , protocols::forge::remodel::RemodelRotamerLinks , protocols::hbnet::ConstrainHBondNetwork , protocols::pack_interface::ProteinProteinInterfaceUpweighter , protocols::simple_task_operations::DockingNoRepack1 , protocols::simple_task_operations::DockingNoRepack2 , protocols::simple_task_operations::InterfaceTaskOperation , protocols::simple_task_operations::RestrictToInterface , protocols::splice::SampleRotamersFromPDB , protocols::task_operations::DsspDesignOperation , protocols::task_operations::ImportUnboundRotamersOperation , protocols::task_operations::JointSequenceOperation , protocols::task_operations::LimitAromaChi2Operation , protocols::task_operations::LinkResidues , protocols::task_operations::RestrictNativeResiduesOperation , protocols::task_operations::RestrictNonSurfaceToRepackingOperation , protocols::task_operations::RestrictOperationsBase , protocols::task_operations::SeqprofConsensusOperation
• TaskOperationOPs : core::pack::task::operation::TaskOperationFactory
• TCacheUnit : core::fragment::CacheWrapper< T, XCacheUnit >
• TCacheUnitAP : core::fragment::CacheWrapper< T, XCacheUnit >
• TCacheUnitOP : core::fragment::CacheWrapper< T, XCacheUnit >
• TemplateList : protocols::abinitio::Templates
• TemplateMap : protocols::abinitio::Templates
• TemplatePoseMap : protocols::antibody::Ab_TemplateInfo
• Tensor : core::scoring::ResidualDipolarCoupling
• Tensor5 : core::scoring::ResidualDipolarCoupling
• three_param_func : protocols::mean_field::jagged_array< T, A >::func_T2< T_2 > , protocols::mean_field::jagged_array< T, A >
• TimeStampedChannel : protocols::jd2::MpiFileBuffer
• TMap : core::fragment::MapCacheUnit< T >
• Topologies : protocols::abinitio::PairingStatistics
• TopologyClaimerCAPs : protocols::topology_broker::ClaimerMessage
• TopologyClaimers : protocols::topology_broker::TopologyBroker
• tors_iterator : core::scoring::HydroxylTorsionPotential
• torsion_parameter : core::energy_methods::ResidueCartBondedParameters
• TorsionID : core::conformation::Conformation , core::conformation::symmetry::SymmetryInfo , core::kinematics::MoveMap , core::optimization::DOF_Node , core::pose::Pose
• TorsionID_Map : core::kinematics::MoveMap
• TorsionIDs : core::conformation::symmetry::SymmetryInfo
• TorsionList : protocols::toolbox::SamplerPlusPlus
• TorsionsIndepSubmap : core::energy_methods::IdealParametersDatabase
• TorsionType : core::kinematics::MoveMap
• TorsionTypeMap : core::kinematics::MoveMap
• TraitEntityHashMap : protocols::genetic_algorithm::GeneticAlgorithmBase
• TripletMap : protocols::fldsgn::topology::HSSTripletSet
• TVector : core::fragment::VectorCacheUnit< T >
• TWO_B_MethodIterator : core::scoring::ScoreFunction
• TWO_B_Methods : core::scoring::ScoreFunction
• two_param_func : protocols::mean_field::jagged_array< T, A >::func_T2< T_2 > , protocols::mean_field::jagged_array< T, A >
• TwoBodyEnergies : core::scoring::MinimizationEdge , core::scoring::MinimizationNode
• TwoBodyEnergiesIterator : core::scoring::MinimizationEdge , core::scoring::MinimizationNode
• type_atom_within_5_map : core::pack::guidance_scoreterms::sap::SapConstraintHelper
• TypeCumulator : protocols::noesy_assign::PeakCalibrator