- c -

CaCbCb_Angle_FuncAP : core::scoring::disulfides
CaCbCb_Angle_FuncCAP : core::scoring::disulfides
CaCbCb_Angle_FuncCOP : core::scoring::disulfides
CaCbCb_Angle_FuncOP : core::scoring::disulfides
CaCbCbCa_Dihedral_FuncAP : core::scoring::disulfides
CaCbCbCa_Dihedral_FuncCAP : core::scoring::disulfides
CaCbCbCa_Dihedral_FuncCOP : core::scoring::disulfides
CaCbCbCa_Dihedral_FuncOP : core::scoring::disulfides
CacheableAtomID_MapVectorAP : core::id
CacheableAtomID_MapVectorCAP : core::id
CacheableAtomID_MapVectorCOP : core::id
CacheableAtomID_MapVectorOP : core::id
CacheableAtomPairFuncMapCOP : core::scoring::custom_pair_distance
CacheableAtomPairFuncMapOP : core::scoring::custom_pair_distance
CacheableObserverAP : core::pose::datacache
CacheableObserverCAP : core::pose::datacache
CacheableObserverCOP : core::pose::datacache
CacheableObserverOP : core::pose::datacache
CacheablePoseRawPtrAP : core::pose::datacache
CacheablePoseRawPtrCAP : core::pose::datacache
CacheablePoseRawPtrCOP : core::pose::datacache
CacheablePoseRawPtrOP : core::pose::datacache
CacheableResidueTypeSetsCOP : core::chemical
CacheableResidueTypeSetsOP : core::chemical
CachedResidueSubsetCOP : core::select::residue_selector
CachedResidueSubsetOP : core::select::residue_selector
CachingScoringMethodCOP : protocols::frag_picker::scores
CachingScoringMethodOP : protocols::frag_picker::scores
CalcInterNeighborGroupCOP : protocols::toolbox
CalcInterNeighborGroupOP : protocols::toolbox
CalculatorFilterCOP : protocols::filters
CalculatorFilterOP : protocols::filters
CalculatorMetricCOP : core::simple_metrics::metrics
CalculatorMetricOP : core::simple_metrics::metrics
CalibrationTypeCumulator : protocols::noesy_assign
Candidate : protocols::frag_picker , protocols::frag_picker::nonlocal
Candidates : protocols::frag_picker
CandidatesCollectorCOP : protocols::frag_picker
CandidatesCollectorOP : protocols::frag_picker
CandidatesSink : protocols::frag_picker
CanonicalSamplingMoverCOP : protocols::canonical_sampling
CanonicalSamplingMoverOP : protocols::canonical_sampling
CarbohydrateInfoCOP : core::chemical::carbohydrates
CarbohydrateInfoOP : core::chemical::carbohydrates
CarbonHBondPotentialCOP : core::scoring::carbon_hbonds
CarbonHBondPotentialOP : core::scoring::carbon_hbonds
CArray_Energy : core::scoring
CArray_TableEnergy : core::scoring
CArrayP_Energy : core::scoring
CArrayP_TableEnergy : core::scoring
CartBondedParametersAP : core::scoring::methods
CartBondedParametersCAP : core::scoring::methods
CartBondedParametersCOP : core::scoring::methods
CartBondedParametersOP : core::scoring::methods
CartesianBondedEnergyAP : core::energy_methods
CartesianBondedEnergyCAP : core::energy_methods
CartesianBondedEnergyCOP : core::energy_methods
CartesianBondedEnergyOP : core::energy_methods
CartesianHybridizeCOP : protocols::hybridization
CartesianHybridizeOP : protocols::hybridization
CartesianMDCOP : protocols::md
CartesianMDOP : protocols::md
CartesianMinimizerCOP : core::optimization
CartesianMinimizerMapCOP : core::optimization
CartesianMinimizerMapOP : core::optimization
CartesianMinimizerOP : core::optimization
CartesianSamplerCOP : protocols::hybridization
CartesianSamplerOP : protocols::hybridization
CartGridIntOP : protocols::ligand_docking
CartSCMinMinimizerMapCOP : core::pack::scmin
CartSCMinMinimizerMapOP : core::pack::scmin
CartSCMinMultifuncCOP : core::pack::scmin
CartSCMinMultifuncOP : core::pack::scmin
CavBallCIter : core::scoring::packstat
CavBallIter : core::scoring::packstat
CavBalls : core::scoring::packstat
CavityVolumeFilterAP : protocols::denovo_design::filters
CavityVolumeFilterCAP : protocols::denovo_design::filters
CavityVolumeFilterCOP : protocols::denovo_design::filters
CavityVolumeFilterOP : protocols::denovo_design::filters
CB_Angle_FuncOP : core::scoring::disulfides
Cb_Distance_FuncAP : core::scoring::disulfides
Cb_Distance_FuncCAP : core::scoring::disulfides
Cb_Distance_FuncCOP : core::scoring::disulfides
Cb_Distance_FuncOP : core::scoring::disulfides
CBScoreCOP : protocols::sic_dock
CBScoreOP : protocols::sic_dock
CBSG_Dihedral_FuncOP : core::scoring::disulfides
CCDEndsGraftMoverCOP : protocols::grafting
CCDEndsGraftMoverOP : protocols::grafting
CCDLoopClosureMoverCOP : protocols::loops::loop_closure::ccd
CCDLoopClosureMoverOP : protocols::loops::loop_closure::ccd
CcdMoverCOP : protocols::loops::loop_closure::ccd
CcdMoverOP : protocols::loops::loop_closure::ccd
CCDMoveWrapperOP : protocols::rbsegment_relax
CDRClusterCOP : protocols::antibody::clusters
CDRClusterEnumManagerCOP : protocols::antibody::clusters
CDRClusterEnumManagerOP : protocols::antibody::clusters
CDRClusterFeaturesCOP : protocols::antibody::clusters
CDRClusterFeaturesOP : protocols::antibody::clusters
CDRClusterMatcherCOP : protocols::antibody::clusters
CDRClusterMatcherOP : protocols::antibody::clusters
CDRClusterOP : protocols::antibody::clusters
CDRClusterSetCOP : protocols::antibody::clusters
CDRClusterSetOP : protocols::antibody::clusters
CDRDBPoseSet : protocols::antibody
CDRDBSequenceSet : protocols::antibody
CDRDihedralConstraintMoverCOP : protocols::antibody::constraints
CDRDihedralConstraintMoverOP : protocols::antibody::constraints
CDRGraftDesignOptionsCOP : protocols::antibody::design
CDRGraftDesignOptionsOP : protocols::antibody::design
CDRGraftDesignOptionsParserCOP : protocols::antibody::design
CDRGraftDesignOptionsParserOP : protocols::antibody::design
CDRH3ModelerCOP : protocols::antibody_legacy
CDRH3ModelerOP : protocols::antibody_legacy
CDRResidueSelectorCOP : protocols::antibody::residue_selector
CDRResidueSelectorOP : protocols::antibody::residue_selector
CDRSeqDesignOptionsCOP : protocols::antibody::design
CDRSeqDesignOptionsOP : protocols::antibody::design
CDRSeqDesignOptionsParserCOP : protocols::antibody::design
CDRSeqDesignOptionsParserOP : protocols::antibody::design
CDRSetOptionsCOP : protocols::antibody
CDRSetOptionsOP : protocols::antibody
CDRSetOptionsParserCOP : protocols::antibody
CDRSetOptionsParserOP : protocols::antibody
CDRsMinPackMinCOP : protocols::antibody
CDRsMinPackMinOP : protocols::antibody
CellOP : core::sequence
Cen_Distance_FuncAP : core::scoring::disulfides
Cen_Distance_FuncCAP : core::scoring::disulfides
Cen_Distance_FuncCOP : core::scoring::disulfides
Cen_Distance_FuncOP : core::scoring::disulfides
CenHBPotentialCOP : core::scoring
CenHBPotentialOP : core::scoring
CenListInfoOP : core::scoring
CenRotEnvPairPotentialCOP : core::scoring
CenRotEnvPairPotentialOP : core::scoring
CenrotLibraryCOP : core::pack::dunbrack::cenrot
CenrotLibraryOP : core::pack::dunbrack::cenrot
CenrotRotamerLibrarySpecificationCOP : core::chemical::rotamers
CenrotRotamerLibrarySpecificationOP : core::chemical::rotamers
CentroidDistanceScreenerCOP : protocols::stepwise::screener
CentroidDistanceScreenerOP : protocols::stepwise::screener
CentroidDisulfideEnergyContainerAP : core::scoring::disulfides
CentroidDisulfideEnergyContainerCAP : core::scoring::disulfides
CentroidDisulfideEnergyContainerCOP : core::scoring::disulfides
CentroidDisulfideEnergyContainerOP : core::scoring::disulfides
CentroidDisulfideEnergyCOP : core::energy_methods
CentroidDisulfideEnergyOP : core::energy_methods
CentroidDisulfidePotentialAP : core::scoring::disulfides
CentroidDisulfidePotentialCAP : core::scoring::disulfides
CentroidDisulfidePotentialCOP : core::scoring::disulfides
CentroidDisulfidePotentialOP : core::scoring::disulfides
CentroidRelaxAP : protocols::relax
CentroidRelaxCAP : protocols::relax
CentroidRelaxCOP : protocols::relax
CentroidRelaxMoverOP : protocols::surface_docking
CentroidRelaxOP : protocols::relax
CentroidRotNumVec : protocols::make_rot_lib
CentroidRotNumVecVec : protocols::make_rot_lib
CentroidScatterOP : core::scoring::fiber_diffraction
ChainAtoms : core::io
ChainCountFilterCOP : protocols::simple_filters
ChainCountFilterOP : protocols::simple_filters
ChainIsntOP : core::pack::task::operation
ChainIsOP : core::pack::task::operation
ChainSegID : core::pose
ChainSelectorCOP : core::select::residue_selector
ChainSelectorOP : core::select::residue_selector
ChainSplitMoverCOP : protocols::simple_moves
ChainSplitMoverOP : protocols::simple_moves
ChangeAndResetFoldTreeMoverCOP : protocols::simple_moves
ChangeAndResetFoldTreeMoverOP : protocols::simple_moves
ChangeFoldTreeMoverCOP : protocols::moves
ChangeFoldTreeMoverOP : protocols::moves
Charge : core
ChargeChargeFeaturesCOP : protocols::features
ChargeChargeFeaturesOP : protocols::features
ChargeTransformList : core::chemical::rdkit
CharSetOP : core::pack::annealer
CheckPointerCOP : protocols::checkpoint
CheckPointerOP : protocols::checkpoint
ChemicalReactionCOP : RDKit
ChemicalReactionOP : RDKit
ChemicalShiftAnisotropyCOP : core::scoring
ChemicalShiftAnisotropyEnergyOP : core::energy_methods
ChemicalShiftAnisotropyOP : core::scoring
ChemicalShiftSequenceCOP : core::sequence
ChemicalShiftSequenceOP : core::sequence
CHIEnergyFunctionCOP : core::scoring::carbohydrates
CHIEnergyFunctionOP : core::scoring::carbohydrates
ChiralMoverCOP : protocols::simple_moves::chiral
ChiralMoverOP : protocols::simple_moves::chiral
ChiSetCOP : core::pack::dunbrack
ChiSetOP : core::pack::dunbrack
ChiVector : core::pack::dunbrack
ChromophoreDataReaderCOP : protocols::chromophore
ChromophoreDataReaderOP : protocols::chromophore
ChunkCOP : protocols::nonlocal
ChunkLibraryInnerLarvalJobCOP : protocols::jd3::chunk_library
ChunkLibraryInnerLarvalJobOP : protocols::jd3::chunk_library
ChunkLibraryInnerLarvalJobs : protocols::jd3::chunk_library
ChunkLibraryInputSourceCOP : protocols::jd3::chunk_library_inputters
ChunkLibraryInputSourceOP : protocols::jd3::chunk_library_inputters
ChunkLibraryInputSources : protocols::jd3::chunk_library_inputters
ChunkLibraryInputterCOP : protocols::jd3::chunk_library_inputters
ChunkLibraryInputterCreatorCOP : protocols::jd3::chunk_library_inputters
ChunkLibraryInputterCreatorOP : protocols::jd3::chunk_library_inputters
ChunkLibraryInputterOP : protocols::jd3::chunk_library_inputters
ChunkLibraryJobQueenCOP : protocols::jd3::chunk_library
ChunkLibraryJobQueenOP : protocols::jd3::chunk_library
ChunkLibraryJobResultCOP : protocols::jd3::chunk_library
ChunkLibraryJobResultOP : protocols::jd3::chunk_library
ChunkLibraryPreliminaryLarvalJobs : protocols::jd3::chunk_library
ChunkOP : protocols::nonlocal
ChunkSetCOP : core::import_pose::libraries
ChunkSetOP : core::import_pose::libraries
ChunkTrialMoverCOP : protocols::hybridization
ChunkTrialMoverOP : protocols::hybridization
CifFileOP : core::chemical::mmCIF
CifParserOP : core::chemical::mmCIF
CircleIter : core::scoring::packstat
Circles : core::scoring::packstat
CircularGeneral1D_FuncCOP : core::scoring::func
CircularGeneral1D_FuncOP : core::scoring::func
CircularHarmonicFuncCOP : core::scoring::func
CircularHarmonicFuncOP : core::scoring::func
CircularPermutation_AP : protocols::fldsgn
CircularPermutation_CAP : protocols::fldsgn
CircularPermutation_COP : protocols::fldsgn
CircularPermutation_OP : protocols::fldsgn
CircularPermuteFreePeptideMoverCOP : protocols::backbone_moves::local_backbone_mover::free_peptide_movers
CircularPermuteFreePeptideMoverOP : protocols::backbone_moves::local_backbone_mover::free_peptide_movers
CircularPowerFuncCOP : core::scoring::func
CircularPowerFuncOP : core::scoring::func
CircularSigmoidalFuncCOP : core::scoring::func
CircularSigmoidalFuncOP : core::scoring::func
CircularSplineFuncCOP : core::scoring::func
CircularSplineFuncOP : core::scoring::func
ClaimerMessageAP : protocols::topology_broker
ClaimerMessageCAP : protocols::topology_broker
ClaimerMessageCOP : protocols::topology_broker
ClaimerMessageOP : protocols::topology_broker
ClaimStrengthAP : protocols::environment::claims
ClaimStrengthCAP : protocols::environment::claims
ClaimStrengthCOP : protocols::environment::claims
ClaimStrengthOP : protocols::environment::claims
ClashBasedRepackShellAP : core::pack::task::operation
ClashBasedRepackShellCAP : core::pack::task::operation
ClashBasedRepackShellCOP : core::pack::task::operation
ClashBasedRepackShellOP : core::pack::task::operation
ClashBasedShellSelectorCOP : core::pack::task::residue_selector
ClashBasedShellSelectorOP : core::pack::task::residue_selector
ClashCheckFilterCOP : protocols::matdes
ClashCheckFilterOP : protocols::matdes
ClashRequirementCOP : protocols::sewing::requirements
ClashRequirementCreatorCOP : protocols::sewing::requirements
ClashRequirementCreatorOP : protocols::sewing::requirements
ClashRequirementOP : protocols::sewing::requirements
ClassicAbinitioCOP : protocols::abinitio
ClassicAbinitioOP : protocols::abinitio
ClassicFragmentMoverCOP : protocols::simple_moves
ClassicFragmentMoverOP : protocols::simple_moves
ClassicMatchAlgorithmCOP : protocols::match::downstream
ClassicMatchAlgorithmOP : protocols::match::downstream
ClearCompositionConstraintsMoverCOP : protocols::aa_composition
ClearCompositionConstraintsMoverOP : protocols::aa_composition
ClientMoverAP : protocols::environment
ClientMoverCAP : protocols::environment
ClientMoverCOP : protocols::environment
ClientMoverOP : protocols::environment
CloseContactResidueSelectorCOP : core::select::residue_selector
CloseContactResidueSelectorOP : core::select::residue_selector
CloseOneCDRLoopCOP : protocols::antibody
CloseOneCDRLoopOP : protocols::antibody
CloseOneMoverCOP : protocols::antibody_legacy
CloseOneMoverOP : protocols::antibody_legacy
ClosureProblemCOP : protocols::kinematic_closure
ClosureProblemOP : protocols::kinematic_closure
ClosureSolutionCOP : protocols::kinematic_closure
ClosureSolutionOP : protocols::kinematic_closure
CloudPDBWriterCOP : protocols::match::output
CloudPDBWriterOP : protocols::match::output
ClusterBaseCOP : protocols::cluster
ClusterBaseOP : protocols::cluster
ClusterMetricCOP : protocols::multistage_rosetta_scripts::cluster
ClusterMetricCreatorCOP : protocols::multistage_rosetta_scripts::cluster
ClusterMetricCreatorOP : protocols::multistage_rosetta_scripts::cluster
ClusterMetricOP : protocols::multistage_rosetta_scripts::cluster
ClusterPhilStyleCOP : protocols::cluster
ClusterPhilStyleOP : protocols::cluster
CoarseRNA_LoopCloserOP : protocols::rna::denovo::coarse
CombineChainsMoverCOP : protocols::domain_assembly
CombineChainsMoverOP : protocols::domain_assembly
CombinedFilterCOP : protocols::filters
CombinedFilterOP : protocols::filters
CombinedTaskOperationOP : protocols::flxbb
CombinePoseMoverCOP : protocols::simple_moves
CombinePoseMoverOP : protocols::simple_moves
CompareQueryPositionCOP : protocols::frag_picker
CompareQueryPositionOP : protocols::frag_picker
CompareScoreComponentCOP : protocols::frag_picker
CompareScoreComponentOP : protocols::frag_picker
CompareTotalScoreCOP : protocols::frag_picker
CompareTotalScoreOP : protocols::frag_picker
CompositeEnergyMetricCOP : core::simple_metrics::composite_metrics
CompositeEnergyMetricOP : core::simple_metrics::composite_metrics
CompositeRealMetricCOP : core::simple_metrics
CompositeRealMetricCreatorCOP : core::simple_metrics
CompositeRealMetricCreatorOP : core::simple_metrics
CompositeRealMetricOP : core::simple_metrics
CompositeScoringSchemeOP : core::sequence
CompositeSegment : protocols::rbsegment_relax
CompositeSequenceCOP : core::sequence
CompositeSequenceOP : core::sequence
CompositeStringMetricCOP : core::simple_metrics
CompositeStringMetricCreatorCOP : core::simple_metrics
CompositeStringMetricCreatorOP : core::simple_metrics
CompositeStringMetricOP : core::simple_metrics
CompositionMoverCOP : protocols::moves
CompositionMoverOP : protocols::moves
CompoundArchitectCOP : protocols::denovo_design::architects
CompoundArchitectOP : protocols::denovo_design::architects
CompoundFilterCOP : protocols::filters
CompoundFilterOP : protocols::filters
CompoundPerturberCOP : protocols::denovo_design::components
CompoundPerturberOP : protocols::denovo_design::components
ComputeLigandRDFCOP : protocols::ligand_docking
ComputeLigandRDFOP : protocols::ligand_docking
CoMTrackerCMCOP : protocols::environment
CoMTrackerCMOP : protocols::environment
ConcatenatePosesMoverCOP : protocols::simple_moves
ConcatenatePosesMoverOP : protocols::simple_moves
ConcurrencyTestCOP : protocols::features::helixAssembly
ConcurrencyTestOP : protocols::features::helixAssembly
ConformationAP : core::conformation
ConformationCAP : core::conformation
ConformationCOP : core::conformation
ConformationKinWriterCOP : core::conformation
ConformationKinWriterOP : core::conformation
ConformationOP : core::conformation
ConformationViewerOP : protocols::viewer
ConformerSwitchMoverCOP : protocols::docking
ConformerSwitchMoverOP : protocols::docking
ConnectChainsMoverCOP : protocols::pose_length_moves
ConnectChainsMoverOP : protocols::pose_length_moves
ConnectionArchitectCOP : protocols::denovo_design::connection
ConnectionArchitectCOPs : protocols::denovo_design::connection
ConnectionArchitectOP : protocols::denovo_design::connection
ConnectionPerturberCOP : protocols::denovo_design::components
ConnectionPerturberOP : protocols::denovo_design::components
ConnectRightAP : protocols::forge::build
ConnectRightCAP : protocols::forge::build
ConnectRightCOP : protocols::forge::build
ConnectRightOP : protocols::forge::build
ConsensusDesignMoverOP : protocols::calc_taskop_movers
ConsensusLoopDesignOperationCOP : protocols::denovo_design::task_operations
ConsensusLoopDesignOperationOP : protocols::denovo_design::task_operations
ConservativeDesignOperationCOP : protocols::task_operations
ConservativeDesignOperationOP : protocols::task_operations
ConservedPosMutationFilterCOP : protocols::calc_taskop_filters
ConservedPosMutationFilterOP : protocols::calc_taskop_filters
const_iterator : core::pose
ConstAbinitioMoverWeightAP : protocols::topology_broker::weights
ConstAbinitioMoverWeightCAP : protocols::topology_broker::weights
ConstAbinitioMoverWeightCOP : protocols::topology_broker::weights
ConstAbinitioMoverWeightOP : protocols::topology_broker::weights
ConstantConstraintCOP : core::scoring::constraints
ConstantConstraintOP : core::scoring::constraints
ConstantFuncOP : core::scoring::func
ConstantLengthFragSetCOP : core::fragment
ConstantLengthFragSetOP : core::fragment
ConstrainHBondNetworkCOP : protocols::hbnet
ConstrainHBondNetworkOP : protocols::hbnet
ConstraintClaimerAP : protocols::topology_broker
ConstraintClaimerCAP : protocols::topology_broker
ConstraintClaimerCOP : protocols::topology_broker
ConstraintClaimerOP : protocols::topology_broker
ConstraintCOP : core::scoring::constraints
ConstraintCOPs : core::scoring::constraints
ConstraintCreatorCOP : core::scoring::constraints
ConstraintCreatorOP : core::scoring::constraints
ConstraintedOptimizationWeightFuncOP : protocols::optimize_weights
ConstraintEvaluatorCOP : protocols::constraints_additional
ConstraintEvaluatorOP : protocols::constraints_additional
ConstraintEvaluatorWrapperAP : protocols::topology_broker
ConstraintEvaluatorWrapperCAP : protocols::topology_broker
ConstraintEvaluatorWrapperCOP : protocols::topology_broker
ConstraintEvaluatorWrapperOP : protocols::topology_broker
ConstraintFragmentSamplerOP : protocols::abinitio
ConstraintFulfilmentFilterCOP : protocols::fold_from_loops::filters
ConstraintFulfilmentFilterOP : protocols::fold_from_loops::filters
ConstraintGeneratorAP : protocols::constraint_generator
ConstraintGeneratorCAP : protocols::constraint_generator
ConstraintGeneratorCOP : protocols::constraint_generator
ConstraintGeneratorCOPs : protocols::constraint_generator
ConstraintGeneratorCreatorCOP : protocols::constraint_generator
ConstraintGeneratorCreatorOP : protocols::constraint_generator
ConstraintGeneratorOP : protocols::constraint_generator
ConstraintGeneratorOPs : protocols::constraint_generator
ConstraintGraphCOP : core::scoring::constraints
ConstraintGraphOP : core::scoring::constraints
ConstrainToIdealMoverCOP : protocols::simple_moves
ConstrainToIdealMoverOP : protocols::simple_moves
ConstraintOP : core::scoring::constraints
ConstraintOPs : core::scoring::constraints , protocols::flxbb
ConstraintPreparerCOP : protocols::abinitio::abscript
ConstraintPreparerOP : protocols::abinitio::abscript
ConstraintResidueSelectorCOP : protocols::fold_from_loops::selectors
ConstraintResidueSelectorOP : protocols::fold_from_loops::selectors
ConstraintsCOP : core::scoring::constraints
ConstraintScoreCutoffFilterCOP : protocols::constraint_filters
ConstraintScoreCutoffFilterOP : protocols::constraint_filters
ConstraintScoreFilterCOP : protocols::constraint_filters
ConstraintScoreFilterOP : protocols::constraint_filters
ConstraintsEnergyCOP : core::scoring::constraints
ConstraintsEnergyOP : core::scoring::constraints
ConstraintSetCOP : core::scoring::constraints
ConstraintSetMoverCOP : protocols::constraint_movers
ConstraintSetMoverOP : protocols::constraint_movers
ConstraintSetOP : core::scoring::constraints
ConstraintSetScoreCOP : protocols::sic_dock
ConstraintSetScoreOP : protocols::sic_dock
ConstraintsManagerCOP : protocols::constraint_generator
ConstraintsManagerOP : protocols::constraint_generator
ConstraintsMapCOP : protocols::constraint_generator
ConstraintsMapOP : protocols::constraint_generator
ConstraintsOP : core::scoring::constraints
ContactCOP : protocols::frag_picker
ContactCountsCOP : protocols::frag_picker
ContactCountsOP : protocols::frag_picker
ContactMapCOP : protocols::contact_map
ContactMapOP : protocols::contact_map
ContactMolecularSurfaceCalculatorCOP : core::scoring::sc
ContactMolecularSurfaceCalculatorOP : core::scoring::sc
ContactMolecularSurfaceFilterCOP : protocols::simple_filters
ContactMolecularSurfaceFilterOP : protocols::simple_filters
ContactOP : protocols::frag_picker
ContactPartnerAP : protocols::contact_map
ContextDependentLRTwoBodyEnergyCOP : core::scoring::methods
ContextDependentLRTwoBodyEnergyOP : core::scoring::methods
ContextDependentOneBodyEnergyOP : core::scoring::methods
ContextDependentTwoBodyEnergyCOP : core::scoring::methods
ContextDependentTwoBodyEnergyOP : core::scoring::methods
ContextGraphCOP : core::scoring
ContextGraphOP : core::scoring
ContextIndependentLRTwoBodyEnergyCOP : core::scoring::methods
ContextIndependentLRTwoBodyEnergyOP : core::scoring::methods
ContextIndependentOneBodyEnergyCOP : core::scoring::methods
ContextIndependentOneBodyEnergyOP : core::scoring::methods
ContextIndependentTwoBodyEnergyCOP : core::scoring::methods
ContextIndependentTwoBodyEnergyOP : core::scoring::methods
ContingentAcceptMoverCOP : protocols::simple_moves
ContingentAcceptMoverOP : protocols::simple_moves
ContingentFilterCOP : protocols::filters
ContingentFilterOP : protocols::filters
ContinuousRotamerSetCOP : core::pack::rotamer_set
ContinuousRotamerSetOP : core::pack::rotamer_set
ContinuousRotamerSetsCOP : core::pack::rotamer_set
ContinuousRotamerSetsOP : core::pack::rotamer_set
ControlStrengths : protocols::environment::claims
ConvertRealToVirtualMoverCOP : protocols::simple_moves
ConvertRealToVirtualMoverOP : protocols::simple_moves
CoordinateConstraintCOP : core::scoring::constraints
CoordinateConstraintGeneratorCOP : protocols::constraint_generator
CoordinateConstraintGeneratorOP : protocols::constraint_generator
CoordinateConstraintOP : core::scoring::constraints
CoordinateConstraintStackOP : protocols::protein_interface_design::movers
Coords : core::chemical::rings
CopyDofMoverCOP : protocols::simple_moves
CopyDofMoverOP : protocols::simple_moves
CopyDofsCOP : core::pose::copydofs
CopyDofsInfoCOP : core::pose::copydofs
CopyDofsInfoOP : core::pose::copydofs
CopyDofsOP : core::pose::copydofs
CopyDofStepWiseSamplerCOP : protocols::stepwise::sampler::copy_dofs
CopyDofStepWiseSamplerOP : protocols::stepwise::sampler::copy_dofs
CopyRotamerMoverCOP : protocols::simple_moves
CopyRotamerMoverOP : protocols::simple_moves
CoreDunbrackFilterCOP : protocols::fldsgn::filters
CoreDunbrackFilterOP : protocols::fldsgn::filters
CoulombCOP : core::scoring::etable::coulomb
CoulombOP : core::scoring::etable::coulomb
CountFromLeftAP : protocols::forge::build
CountFromLeftCAP : protocols::forge::build
CountFromLeftCOP : protocols::forge::build
CountFromLeftOP : protocols::forge::build
CountPairFunctionCOP : core::scoring::etable::count_pair
CountPairFunctionOP : core::scoring::etable::count_pair
CountPairGenericOP : core::scoring::etable::count_pair
CountPairRepMapCOP : core::scoring::elec
CountPairRepMapOP : core::scoring::elec
CoupledMoverCOP : protocols::simple_moves
CoupledMoverOP : protocols::simple_moves
CoupledMovesProtocolCOP : protocols::coupled_moves
CoupledMovesProtocolOP : protocols::coupled_moves
CouplingTensor : core::scoring::constraints
CouplingTensorCOP : core::scoring::constraints
CouplingTensorOP : core::scoring::constraints
CovalentConnectionReplaceInfoCOP : protocols::toolbox::match_enzdes_util
CovalentConnectionReplaceInfoOP : protocols::toolbox::match_enzdes_util
CovalentResidueNetworkCOP : protocols::toolbox
CovalentResidueNetworkOP : protocols::toolbox
CPRepMapType : core::scoring::elec
CPRepMapTypeCOP : core::scoring::elec
CPRepMapTypeOP : core::scoring::elec
CreateAngleConstraintCOP : protocols::cyclic_peptide
CreateAngleConstraintCOPs : protocols::cyclic_peptide
CreateAngleConstraintOP : protocols::cyclic_peptide
CreateAngleConstraintOPs : protocols::cyclic_peptide
CreateDistanceConstraintCOP : protocols::cyclic_peptide
CreateDistanceConstraintCOPs : protocols::cyclic_peptide
CreateDistanceConstraintOP : protocols::cyclic_peptide
CreateDistanceConstraintOPs : protocols::cyclic_peptide
CreateGlycanSequonMoverCOP : protocols::carbohydrates
CreateGlycanSequonMoverOP : protocols::carbohydrates
CreateSequenceMotifMoverCOP : protocols::calc_taskop_movers
CreateSequenceMotifMoverOP : protocols::calc_taskop_movers
CreateTorsionConstraintCOP : protocols::cyclic_peptide
CreateTorsionConstraintCOPs : protocols::cyclic_peptide
CreateTorsionConstraintOP : protocols::cyclic_peptide
CreateTorsionConstraintOPs : protocols::cyclic_peptide
CrosslinkerMoverCOP : protocols::cyclic_peptide
CrosslinkerMoverHelperCOP : protocols::cyclic_peptide::crosslinker
CrosslinkerMoverHelperOP : protocols::cyclic_peptide::crosslinker
CrosslinkerMoverOP : protocols::cyclic_peptide
CrossPeakAP : protocols::noesy_assign
CrossPeakCAP : protocols::noesy_assign
CrossPeakCOP : protocols::noesy_assign
CrossPeakInfoAP : protocols::noesy_assign
CrossPeakInfoCAP : protocols::noesy_assign
CrossPeakInfoCOP : protocols::noesy_assign
CrossPeakInfoOP : protocols::noesy_assign
CrossPeakListAP : protocols::noesy_assign
CrossPeakListCAP : protocols::noesy_assign
CrossPeakListCOP : protocols::noesy_assign
CrossPeakListOP : protocols::noesy_assign
CrossPeakOP : protocols::noesy_assign
CrystalContactsOperationCOP : protocols::task_operations
CrystalContactsOperationOP : protocols::task_operations
CSScoreCOP : protocols::frag_picker::scores
CSScoreOP : protocols::frag_picker::scores
CstEnergyContainerCOP : core::scoring::constraints
CstEnergyContainerOP : core::scoring::constraints
CstInfoMoverCOP : protocols::constraint_movers
CstInfoMoverOP : protocols::constraint_movers
CstMinimizationDataCOP : core::scoring::constraints
CstMinimizationDataOP : core::scoring::constraints
CubeKey : core::conformation
CustomBaseTypePackerPaletteCOP : core::pack::palette
CustomBaseTypePackerPaletteOP : core::pack::palette
CustomScoreSelectorCOP : protocols::frag_picker
CustomScoreSelectorOP : protocols::frag_picker
CutBiasClaimAP : protocols::environment::claims
CutBiasClaimCAP : protocols::environment::claims
CutBiasClaimCOP : protocols::environment::claims
CutBiasClaimerAP : protocols::topology_broker
CutBiasClaimerCAP : protocols::topology_broker
CutBiasClaimerCOP : protocols::topology_broker
CutBiasClaimerOP : protocols::topology_broker
CutBiasClaimOP : protocols::environment::claims
CutBiasElements : protocols::environment::claims
CutChainMoverCOP : protocols::simple_moves
CutChainMoverOP : protocols::simple_moves
CutClaimAP : protocols::topology_broker::claims
CutClaimCAP : protocols::topology_broker::claims
CutClaimCOP : protocols::topology_broker::claims
CutClaimOP : protocols::topology_broker::claims
CutClaims : protocols::topology_broker::claims
CutElements : protocols::environment::claims
CutOutDomainCOP : protocols::cutoutdomain
CutOutDomainOP : protocols::cutoutdomain
CutpointResidueSelectorCOP : protocols::fold_from_loops::selectors
CutpointResidueSelectorOP : protocols::fold_from_loops::selectors
Cutpoints : protocols::denovo_design::components
CycleMoverCOP : protocols::moves
CycleMoverOP : protocols::moves
CyclicMoverCOP : protocols::moves
CyclicMoverOP : protocols::moves
CyclizationMoverCOP : protocols::simple_moves
CyclizationMoverOP : protocols::simple_moves
CyclizedPeptideInfoCOP : protocols::peptide_deriver
CyclizedPeptideInfoOP : protocols::peptide_deriver
CycpepSymmetryFilterCOP : protocols::cyclic_peptide
CycpepSymmetryFilterOP : protocols::cyclic_peptide