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H3CterInsertCOP : protocols::antibody
H3CterInsertOP : protocols::antibody
H3PerturbCCDCOP : protocols::antibody
H3PerturbCCDOP : protocols::antibody
H3RefineCCDCOP : protocols::antibody
H3RefineCCDOP : protocols::antibody
HamiltonianExchangeCOP : protocols::canonical_sampling
HamiltonianExchangeOP : protocols::canonical_sampling
Hankel : core::scoring::fiber_diffraction
HarmonicFuncCOP : core::scoring::func
HarmonicFuncOP : core::scoring::func
HashedSmartAssemblyCOP : protocols::sewing::data_storage
HashedSmartAssemblyOP : protocols::sewing::data_storage
HasherCOP : protocols::legacy_sewing , protocols::sewing::hashing
HasherOP : protocols::legacy_sewing , protocols::sewing::hashing
HashKey : protocols::legacy_sewing , protocols::sewing::hashing
HashMap : protocols::legacy_sewing , protocols::sewing::hashing
HBNetCOP : protocols::hbnet
HBNetEnergyCOP : core::pack::guidance_scoreterms::hbnet_energy
HBNetEnergyOP : core::pack::guidance_scoreterms::hbnet_energy
HBNetOP : protocols::hbnet
HBNetScoreCOP : protocols::hbnet
HBNetScoreOP : protocols::hbnet
HBNetStapleInterfaceCOP : protocols::hbnet
HBNetStapleInterfaceOP : protocols::hbnet
HBondCOP : core::scoring::hbonds
HBondDatabaseCOP : core::scoring::hbonds
HBondDatabaseOP : core::scoring::hbonds
HBondDataCOP : protocols::constraint_generator
HBondDataCOPs : protocols::constraint_generator
HBondDataOP : protocols::constraint_generator
HBondDataOPs : protocols::constraint_generator
HBondEdgeCOP : core::scoring::hbonds::graph
HBondEdgeOP : core::scoring::hbonds::graph
HBondEnergyCAP : core::energy_methods , core::scoring::hbonds
HBondEnergyCOP : core::energy_methods , core::scoring::hbonds
HBondEnergyOP : core::energy_methods , core::scoring::hbonds
HBondFeaturesCOP : protocols::features
HBondFeaturesOP : protocols::features
HBondGraphCOP : core::scoring::hbonds::graph
HBondGraphInitializerIGCOP : core::pack::hbonds
HBondGraphInitializerIGOP : core::pack::hbonds
HBondGraphOP : core::scoring::hbonds::graph
HbondMetricCOP : core::simple_metrics::per_residue_metrics
HbondMetricOP : core::simple_metrics::per_residue_metrics
HBondNetStructCOP : protocols::hbnet
HBondNetStructOP : protocols::hbnet
HBondNodeCOP : core::scoring::hbonds::graph
HBondNodeOP : core::scoring::hbonds::graph
HBondOP : core::scoring::hbonds
HBondOptionsCOP : core::scoring::hbonds
HBondOptionsOP : core::scoring::hbonds
HBondParameterFeaturesCOP : protocols::features
HBondParameterFeaturesOP : protocols::features
HBondResidueMinDataCOP : core::scoring::hbonds
HBondResidueMinDataOP : core::scoring::hbonds
HBondResPairMinDataCOP : core::scoring::hbonds
HBondResPairMinDataOP : core::scoring::hbonds
HBondResStructCOP : protocols::hbnet
HBondResStructOP : protocols::hbnet
HBondRotamerTrieCOP : core::scoring::hbonds::hbtrie
HBondRotamerTrieOP : core::scoring::hbonds::hbtrie
HBondSelectorCOP : protocols::residue_selectors
HBondSelectorOP : protocols::residue_selectors
HBondSetCOP : core::scoring::hbonds
HBondSetOP : core::scoring::hbonds
HbondsToResidueFilterCOP : protocols::protein_interface_design::filters
HbondsToResidueFilterCOPs : protocols::protein_interface_design::filters
HbondsToResidueFilterOP : protocols::protein_interface_design::filters
HbondsToResidueFilterOPs : protocols::protein_interface_design::filters
HBondsTrieVsTrieCachedDataContainerCOP : core::scoring::hbonds::hbtrie
HBondsTrieVsTrieCachedDataContainerOP : core::scoring::hbonds::hbtrie
HBondTypeManagerCOP : core::scoring::hbonds
HBondTypeManagerOP : core::scoring::hbonds
HBP_FinalFullatomRefinementMoveGeneratorCOP : protocols::helical_bundle_predict
HBP_FinalFullatomRefinementMoveGeneratorOP : protocols::helical_bundle_predict
HBP_HelixCoilMoveGeneratorCOP : protocols::helical_bundle_predict
HBP_HelixCoilMoveGeneratorOP : protocols::helical_bundle_predict
HBP_MoveGeneratorCOP : protocols::helical_bundle_predict
HBP_MoveGeneratorOP : protocols::helical_bundle_predict
HBP_SigmoidalTemperatureScheduleGeneratorCOP : protocols::helical_bundle_predict
HBP_SigmoidalTemperatureScheduleGeneratorOP : protocols::helical_bundle_predict
HBP_TemperatureScheduleGeneratorCOP : protocols::helical_bundle_predict
HBP_TemperatureScheduleGeneratorOP : protocols::helical_bundle_predict
HBPEndPosition : protocols::helical_bundle_predict
HBPHelixAssignmentsCOP : protocols::helical_bundle_predict
HBPHelixAssignmentsOP : protocols::helical_bundle_predict
HBPHelixCOP : protocols::helical_bundle_predict
HBPHelixOP : protocols::helical_bundle_predict
HBPHelixParametersCOP : protocols::helical_bundle_predict
HBPHelixParametersOP : protocols::helical_bundle_predict
HBPStartPosition : protocols::helical_bundle_predict
HbsPatcherCOP : protocols::simple_moves::hbs
HbsPatcherOP : protocols::simple_moves::hbs
hConvergenceCheckOP : protocols::abinitio , protocols::hybridization
HeaderInformationCOP : core::io
HeaderInformationOP : core::io
HeavyAtomED : core::chemical
HeavyAtomEIter : core::chemical
HeavyAtomGraph : core::chemical
HeavyAtomOutEdgeIter : core::chemical
HeavyAtomOutEdgeIterPair : core::chemical
HeavyAtomVD : core::chemical
HeavyAtomVIter : core::chemical
HeavyAtomVIterPair : core::chemical
HeavyAtomWithHydrogensEIter : core::chemical
HeavyAtomWithHydrogensGraph : core::chemical
HeavyAtomWithHydrogensVIter : core::chemical
HeavyAtomWithHydrogensVIterPair : core::chemical
HeavyAtomWithPolarHydrogensEIter : core::chemical
HeavyAtomWithPolarHydrogensGraph : core::chemical
HeavyAtomWithPolarHydrogensVIter : core::chemical
HeavyAtomWithPolarHydrogensVIterPair : core::chemical
HedgeArchiveCOP : protocols::abinitio
HedgeArchiveOP : protocols::abinitio
HelicalBundlePredictApplicationCOP : protocols::helical_bundle_predict
HelicalBundlePredictApplicationOP : protocols::helical_bundle_predict
HelicalBundlePredictApplicationOptionsCOP : protocols::helical_bundle_predict
HelicalBundlePredictApplicationOptionsOP : protocols::helical_bundle_predict
HelicalFragmentCOP : protocols::features::helixAssembly
HelicalFragmentOP : protocols::features::helixAssembly
Helices : protocols::fldsgn::topology
HelixArchitectCOP : protocols::denovo_design::architects
HelixArchitectOP : protocols::denovo_design::architects
HelixBendFilterCOP : protocols::fldsgn::filters
HelixBendFilterOP : protocols::fldsgn::filters
HelixBundleFeaturesCOP : protocols::features::helixAssembly
HelixBundleFeaturesOP : protocols::features::helixAssembly
HelixCOP : protocols::fldsgn::topology
HelixFromSequenceCOP : protocols::membrane
HelixFromSequenceOP : protocols::membrane
HelixHelixAngleFilterCOP : protocols::simple_filters
HelixHelixAngleFilterOP : protocols::simple_filters
HelixKinkFilterCOP : protocols::fldsgn::filters
HelixKinkFilterOP : protocols::fldsgn::filters
HelixOP : protocols::fldsgn::topology
HelixPairingCOP : protocols::denovo_design::components , protocols::fldsgn::topology
HelixPairingCOPs : protocols::denovo_design::components
HelixPairingFilterCOP : protocols::fldsgn::filters
HelixPairingFilterOP : protocols::fldsgn::filters
HelixPairingOP : protocols::denovo_design::components , protocols::fldsgn::topology
HelixPairingOPs : protocols::denovo_design::components
HelixPairings : protocols::fldsgn::topology
HelixPairingSetCOP : protocols::fldsgn::topology
HelixPairingSetOP : protocols::fldsgn::topology
HelixPerturberCOP : protocols::denovo_design::components
HelixPerturberOP : protocols::denovo_design::components
HelixRotateCOP : protocols::nonlocal
HelixRotateOP : protocols::nonlocal
HelixSheetPairingCOP : protocols::denovo_design::components
HelixSheetPairingCOPs : protocols::denovo_design::components
HelixSheetPairingOP : protocols::denovo_design::components
HelixSheetPairingOPs : protocols::denovo_design::components
HHydrogenAtomEIter : core::chemical
HierarchicalHybridJD_JobResultsSummaryCOP : protocols::cyclic_peptide_predict
HierarchicalHybridJD_JobResultsSummaryCOPs : protocols::cyclic_peptide_predict
HierarchicalHybridJD_JobResultsSummaryOP : protocols::cyclic_peptide_predict
HierarchicalHybridJD_JobResultsSummaryOPs : protocols::cyclic_peptide_predict
HierarchicalHybridJD_PNearToArbitraryStateSummaryCOP : protocols::cyclic_peptide_predict
HierarchicalHybridJD_PNearToArbitraryStateSummaryOP : protocols::cyclic_peptide_predict
HierarchicalHybridJD_ResultsSummaryBaseCOP : protocols::cyclic_peptide_predict
HierarchicalHybridJD_ResultsSummaryBaseOP : protocols::cyclic_peptide_predict
HierarchicalHybridJD_RMSDToBestSummaryCOP : protocols::cyclic_peptide_predict
HierarchicalHybridJD_RMSDToBestSummaryOP : protocols::cyclic_peptide_predict
HierarchicalHybridJD_SASASummaryCOP : protocols::cyclic_peptide_predict
HierarchicalHybridJD_SASASummaryOP : protocols::cyclic_peptide_predict
HierarchicalLevelCOP : protocols::canonical_sampling::mc_convergence_checks
HierarchicalLevelOP : protocols::canonical_sampling::mc_convergence_checks
HighResDockerCOP : protocols::ligand_docking
HighResDockerCOPs : protocols::ligand_docking
HighResDockerOP : protocols::ligand_docking
HighResDockerOPs : protocols::ligand_docking
HighResEnsembleCOP : protocols::ligand_docking
HighResEnsembleCOPs : protocols::ligand_docking
HighResEnsembleOP : protocols::ligand_docking
HighResEnsembleOPs : protocols::ligand_docking
HistogramCOP : protocols::recces
HistogramOP : protocols::recces
HitHasherCOP : protocols::match
HitHasherOP : protocols::match
HitPtrList : protocols::match
HitPtrListCOP : protocols::match
HitPtrListOP : protocols::match
HolesFilterCOP : protocols::simple_filters
HolesFilterOP : protocols::simple_filters
HotspotStubCOP : protocols::hotspot_hashing
HotspotStubOP : protocols::hotspot_hashing
HotspotStubSetCOP : protocols::hotspot_hashing
HotspotStubSetOP : protocols::hotspot_hashing
hours_timing : core::simple_metrics::metrics
HPool_RMSD_COP : protocols::canonical_sampling::mc_convergence_checks
HPool_RMSD_OP : protocols::canonical_sampling::mc_convergence_checks
HSPairPotentialOP : protocols::fldsgn::potentials::sspot
HSSConstIterator : protocols::fldsgn::topology
HSSIterator : protocols::fldsgn::topology
HSSTripletCOP : protocols::fldsgn::topology
HSSTripletFilterCOP : protocols::fldsgn::filters
HSSTripletFilterOP : protocols::fldsgn::filters
HSSTripletOP : protocols::fldsgn::topology
HSSTriplets : protocols::fldsgn::topology
HSSTripletSetCOP : protocols::fldsgn::topology
HSSTripletSetOP : protocols::fldsgn::topology
HT : core::scoring::nmr
HTReal : core::select::util
HybridizeFoldtreeMoverCOP : protocols::hybridization
HybridizeFoldtreeMoverOP : protocols::hybridization
HybridizeProtocolCOP : protocols::hybridization
HybridizeProtocolOP : protocols::hybridization
HydrateCOP : protocols::hydrate
HydrateOP : protocols::hydrate
HydrogenAtomED : core::chemical
HydrogenAtomGraph : core::chemical
HydrogenAtomOutEdgeIter : core::chemical
HydrogenAtomOutEdgeIterPair : core::chemical
HydrogenAtomVD : core::chemical
HydrogenAtomVIter : core::chemical
HydrogenAtomVIterPair : core::chemical
HydrogenBondConstraintGeneratorCOP : protocols::constraint_generator
HydrogenBondConstraintGeneratorCOPs : protocols::constraint_generator
HydrogenBondConstraintGeneratorOP : protocols::constraint_generator
HydrogenBondConstraintGeneratorOPs : protocols::constraint_generator
HydrogenBondingAtoms : protocols::constraint_generator
HydroxylTorsionEnergyOP : core::energy_methods
HydroxylTorsionPotentialCOP : core::scoring
HydroxylTorsionPotentialOP : core::scoring