- m -

MainchainScoreTableCOP : core::chemical::mainchain_potential
MainchainScoreTableOP : core::chemical::mainchain_potential
MainChainTorsionSetList : protocols::stepwise::modeler::protein
MakeAsymmetricStructureDataMoverCOP : protocols::denovo_design::movers
MakeAsymmetricStructureDataMoverOP : protocols::denovo_design::movers
MakeBundleCOP : protocols::helical_bundle
MakeBundleCOPs : protocols::helical_bundle
MakeBundleHelixCOP : protocols::helical_bundle
MakeBundleHelixCOPs : protocols::helical_bundle
MakeBundleHelixOP : protocols::helical_bundle
MakeBundleHelixOPs : protocols::helical_bundle
MakeBundleOP : protocols::helical_bundle
MakeBundleOPs : protocols::helical_bundle
MakeCanonicalHelixCOP : protocols::membrane::benchmark
MakeCanonicalHelixOP : protocols::membrane::benchmark
MakeFragmentScoringMethodCOP : protocols::frag_picker::scores
MakeFragmentScoringMethodOP : protocols::frag_picker::scores
MakeJunctionsMoverCOP : protocols::pose_creation
MakeJunctionsMoverOP : protocols::pose_creation
MakePolyXMoverOP : protocols::pose_creation
MakeRotLibJobCOP : protocols::make_rot_lib
MakeRotLibJobInputterCOP : protocols::make_rot_lib
MakeRotLibJobInputterOP : protocols::make_rot_lib
MakeRotLibJobOP : protocols::make_rot_lib
MakeRotLibMoverCOP : protocols::make_rot_lib
MakeRotLibMoverOP : protocols::make_rot_lib
MakeRotLibOptionsDataCOP : protocols::make_rot_lib
MakeRotLibOptionsDataOP : protocols::make_rot_lib
MapByLengths : protocols::denovo_design::components
MapByOrientations : protocols::denovo_design::components
MapByStrands : protocols::denovo_design::components
Mass : core
Mat : core::conformation::symmetry , core::scoring::motif , protocols::kinmatch , protocols::matdes , protocols::scoring , protocols::sic_dock , protocols::sic_dock::scores
Mat3 : protocols::sparta
match : protocols::match
match_lite : protocols::match
MatchConsolidatorCOP : protocols::match::output
MatchConsolidatorOP : protocols::match::output
MatchConstraintFileInfoCOP : protocols::toolbox::match_enzdes_util
MatchConstraintFileInfoListCOP : protocols::toolbox::match_enzdes_util
MatchConstraintFileInfoListOP : protocols::toolbox::match_enzdes_util
MatchConstraintFileInfoOP : protocols::toolbox::match_enzdes_util
MatcherCOP : protocols::match
MatcherMoverCOP : protocols::match
MatcherMoverOP : protocols::match
MatcherOP : protocols::match
MatcherTaskCOP : protocols::match
MatcherTaskOP : protocols::match
MatchEvaluatorCOP : protocols::match::output
MatchEvaluatorOP : protocols::match::output
MatchFilterCOP : protocols::match::output
MatchFilterOP : protocols::match::output
MatchGrafterCOP : protocols::metal_interface
MatchGrafterOP : protocols::metal_interface
MatchGrouperCOP : protocols::match::output
MatchGrouperOP : protocols::match::output
MatchOutputterCOP : protocols::match::output
MatchOutputterOP : protocols::match::output
MatchPositionModifierCOP : protocols::match
MatchPositionModifierOP : protocols::match
MatchProcessorCOP : protocols::match::output
MatchProcessorOP : protocols::match::output
MatchResiduesMoverCOP : protocols::fldsgn
MatchResiduesMoverOP : protocols::fldsgn
MatchScoreWriterCOP : protocols::match::output
MatchScoreWriterOP : protocols::match::output
MatDesGreedyOptMutationMoverCOP : protocols::matdes
MatDesGreedyOptMutationMoverOP : protocols::matdes
MatDesPointMutationCalculatorCOP : protocols::matdes
MatDesPointMutationCalculatorOP : protocols::matdes
Matrix : core::energy_methods , core::pose::rna , core::scoring::dna , core::scoring::loop_graph::evaluator
matrix : core::scoring
Matrix : core::scoring , core::scoring::nmr , core::scoring::power_diagram , core::scoring::rna , protocols::frag_picker::scores , protocols::hotspot_hashing , protocols::loops::loop_closure::ccd
matrix : protocols::toolbox
Matrix : protocols::toolbox , protocols::toolbox::rigid_body
Mats : protocols::sic_dock
MaxSeqSepConstraintSetCOP : protocols::constraints_additional
MaxSeqSepConstraintSetOP : protocols::constraints_additional
MC_AnyCOP : protocols::recces::sampler
MC_AnyOP : protocols::recces::sampler
MC_CombOP : protocols::recces::sampler
MC_LoopCOP : protocols::recces::sampler
MC_LoopOP : protocols::recces::sampler
MC_OneTorsionAP : protocols::recces::sampler
MC_OneTorsionOP : protocols::recces::sampler
MC_RNA_KIC_SamplerOP : protocols::recces::sampler::rna
MC_RNA_MultiSuiteOP : protocols::recces::sampler::rna
MC_RNA_OneJumpCOP : protocols::recces::sampler::rna
MC_RNA_OneJumpOP : protocols::recces::sampler::rna
MC_RNA_SugarAP : protocols::recces::sampler::rna
MC_RNA_SugarOP : protocols::recces::sampler::rna
MC_RNA_SuiteOP : protocols::recces::sampler::rna
MC_SamplerCOP : protocols::recces::sampler
MC_SamplerOP : protocols::recces::sampler
MCShowMoverCOP : protocols::moves
MCShowMoverOP : protocols::moves
MDBaseAP : devel::md
MDBaseCAP : devel::md
MDBaseCOP : devel::md
MDBaseOP : devel::md
MeanFieldCOP : protocols::mean_field
MeanFieldOP : protocols::mean_field
MedalFreeMoverCOP : protocols::medal
MedalFreeMoverOP : protocols::medal
MedalMoverCOP : protocols::medal
MedalMoverOP : protocols::medal
MembEtableCAP : core::scoring::etable
MembEtableCOP : core::scoring::etable
MembEtableOP : core::scoring::etable
Membrane_FAEmbedCOP : core::scoring
Membrane_FAEmbedOP : core::scoring
Membrane_FAPotentialCOP : core::scoring
Membrane_FAPotentialOP : core::scoring
MembraneAbinitioCOP : protocols::abinitio
MembraneAbinitioOP : protocols::abinitio
MembraneDataCOP : core::scoring::membrane
MembraneDataOP : core::scoring::membrane
MembraneEmbedCOP : core::scoring
MembraneEmbedOP : core::scoring
MembraneEnergyLandscapeSamplerCOP : protocols::membrane_benchmark
MembraneEnergyLandscapeSamplerOP : protocols::membrane_benchmark
MembraneInfoCOP : core::conformation::membrane
MembraneInfoOP : core::conformation::membrane
MembraneJumpOP : protocols::jumping
MembranePositionFromTopologyMoverCOP : protocols::membrane
MembranePositionFromTopologyMoverOP : protocols::membrane
MembranePotentialCOP : core::scoring
MembranePotentialOP : core::scoring
MembraneSpanConstraintCOP : core::scoring::constraints
MembraneSpanConstraintGeneratorCOP : protocols::constraint_generator
MembraneSpanConstraintGeneratorOP : protocols::constraint_generator
MembraneSpanConstraintOP : core::scoring::constraints
MembraneSpanTermZConstraintCOP : core::scoring::constraints
MembraneSpanTermZConstraintOP : core::scoring::constraints
MembraneTopologyClaimerAP : protocols::topology_broker
MembraneTopologyClaimerCAP : protocols::topology_broker
MembraneTopologyClaimerCOP : protocols::topology_broker
MembraneTopologyClaimerOP : protocols::topology_broker
MembraneTopologyCOP : core::scoring , protocols::simple_moves
MembraneTopologyOP : core::scoring , protocols::simple_moves
MEnvAtomParamsCOP : protocols::membrane::scoring
MEnvAtomParamsOP : protocols::membrane::scoring
MergeBehaviorManagerCOP : core::chemical
MergeBehaviorManagerOP : core::chemical
MergePDBatOverlapMoverCOP : protocols::pose_creation
MergePDBatOverlapMoverOP : protocols::pose_creation
MergePDBMoverCOP : protocols::pose_creation
MergePDBMoverOP : protocols::pose_creation
Metal_HelperBaseCOP : protocols::cyclic_peptide::crosslinker
Metal_HelperBaseOP : protocols::cyclic_peptide::crosslinker
MetalContactsConstraintGeneratorCOP : protocols::constraint_generator
MetalContactsConstraintGeneratorOP : protocols::constraint_generator
MetalloClaimerAP : protocols::topology_broker
MetalloClaimerCAP : protocols::topology_broker
MetalloClaimerCOP : protocols::topology_broker
MetalloClaimerOP : protocols::topology_broker
MetalSiteResidueCOP : protocols::metal_interface
MetalSiteResidueOP : protocols::metal_interface
MetapatchCOP : core::chemical
MetapatchEnumerationCOP : protocols::residue_optimization
MetapatchEnumerationOP : protocols::residue_optimization
MetapatchOP : core::chemical
MetaPoseEvaluatorCOP : protocols::evaluation
MetaPoseEvaluatorOP : protocols::evaluation
MetricCalculatorFitnessFunctionCOP : protocols::multistate_design
MetricCalculatorFitnessFunctionOP : protocols::multistate_design
MetropolisHastingsMoverAP : protocols::canonical_sampling
MetropolisHastingsMoverCAP : protocols::canonical_sampling
MetropolisHastingsMoverCOP : protocols::canonical_sampling
MetropolisHastingsMoverOP : protocols::canonical_sampling
MgEnergyCOP : core::energy_methods
MgEnergyOP : core::energy_methods
MgHydraterCOP : protocols::magnesium
MgHydraterOP : protocols::magnesium
MgKnowledgeBasedPotentialCOP : core::scoring::magnesium
MgKnowledgeBasedPotentialOP : core::scoring::magnesium
MgMinimizerCOP : protocols::magnesium
MgMinimizerOP : protocols::magnesium
MgMonteCarloCOP : protocols::magnesium
MgMonteCarloOP : protocols::magnesium
MgOrbitalFrameFinderCOP : protocols::magnesium
MgOrbitalFrameFinderOP : protocols::magnesium
MgScannerCOP : protocols::magnesium
MgScannerOP : protocols::magnesium
MgWaterHydrogenPackerCOP : protocols::magnesium
MgWaterHydrogenPackerOP : protocols::magnesium
MHCEpitopeConstraintCOP : core::scoring::mhc_epitope_energy
MHCEpitopeConstraintOP : core::scoring::mhc_epitope_energy
MHCEpitopeEnergyCOP : core::energy_methods
MHCEpitopeEnergyOP : core::energy_methods
MHCEpitopeEnergySetupCOP : core::scoring::mhc_epitope_energy
MHCEpitopeEnergySetupOP : core::scoring::mhc_epitope_energy
MHCEpitopePredictorCOP : core::scoring::mhc_epitope_energy
MHCEpitopePredictorExternalCOP : core::scoring::mhc_epitope_energy
MHCEpitopePredictorExternalOP : core::scoring::mhc_epitope_energy
MHCEpitopePredictorMatrixCOP : core::scoring::mhc_epitope_energy
MHCEpitopePredictorMatrixOP : core::scoring::mhc_epitope_energy
MHCEpitopePredictorOP : core::scoring::mhc_epitope_energy
MHCEpitopePredictorPreLoadedCOP : core::scoring::mhc_epitope_energy
MHCEpitopePredictorPreLoadedOP : core::scoring::mhc_epitope_energy
MHCEpitopePredictorSVMCOP : core::scoring::mhc_epitope_energy
MHCEpitopePredictorSVMOP : core::scoring::mhc_epitope_energy
MinimalFragSetCOP : core::fragment
MinimalFragSetOP : core::fragment
MinimalistFlexbbInteractionGraphCOP : protocols::flexpack::interaction_graph
MinimalistFlexbbInteractionGraphOP : protocols::flexpack::interaction_graph
MinimalRotamerCOP : protocols::minimization_packing
MinimalRotamerOP : protocols::minimization_packing
MinimizationGraphCOP : core::scoring
MinimizationGraphOP : core::scoring
MinimizationRefinerCOP : protocols::loop_modeling::refiners
MinimizationRefinerOP : protocols::loop_modeling::refiners
MinimizeBackboneCOP : protocols::ligand_docking
MinimizeBackboneCOPs : protocols::ligand_docking
MinimizeBackboneOP : protocols::ligand_docking
MinimizeBackboneOPs : protocols::ligand_docking
MinimizeLigandCOP : protocols::ligand_docking
MinimizeLigandCOPs : protocols::ligand_docking
MinimizeLigandOP : protocols::ligand_docking
MinimizeLigandOPs : protocols::ligand_docking
MinimizerMapBaseCOP : core::kinematics
MinimizerMapBaseOP : core::kinematics
MinimizerMapCOP : core::optimization
MinimizerMapOP : core::optimization
MinimizerOptionsCOP : core::optimization
MinimizerOptionsOP : core::optimization
MinimizeStoredRBConfsCOP : protocols::enzdes
MinimizeStoredRBConfsOP : protocols::enzdes
MiniPoseAP : core::pose
MiniPoseCAP : core::pose
MiniPoseCOP : core::pose
MiniPoseOP : core::pose
MiniRelaxOP : protocols::relax
MinMoverCOP : protocols::minimization_packing
MinMoverOP : protocols::minimization_packing
MinMultiHarmonicFuncCOP : core::scoring::func
MinMultiHarmonicFuncOP : core::scoring::func
MinPackMoverCOP : protocols::minimization_packing
MinPackMoverOP : protocols::minimization_packing
MinScoreScoreFunctionCOP : core::scoring
MinScoreScoreFunctionOP : core::scoring
minutes_timing : core::simple_metrics::metrics
mioAD : core::chemical::sdf
mioBD : core::chemical::sdf
MirrorSymmetricConformationCOP : core::conformation::symmetry
MirrorSymmetricConformationOP : core::conformation::symmetry
MissingDensityToJumpMoverCOP : protocols::simple_moves
MissingDensityToJumpMoverOP : protocols::simple_moves
MixtureFuncOP : core::scoring::func
mm_bondangle_atom_tri : core::scoring::mm
mm_bondangle_library : core::scoring::mm
mm_bondangle_library_citer : core::scoring::mm
mm_bondangle_library_citer_pair : core::scoring::mm
mm_bondangle_param_set : core::scoring::mm
mm_bondlength_atom_pair : core::scoring::mm
mm_bondlength_library : core::scoring::mm
mm_bondlength_library_citer : core::scoring::mm
mm_bondlength_library_citer_pair : core::scoring::mm
mm_bondlength_param_set : core::scoring::mm
mm_lj_atom : core::scoring::mm
mm_lj_param_set : core::scoring::mm
mm_torsion_atom_quad : core::scoring::mm
mm_torsion_atom_quad_angle_pair : core::scoring::methods
mm_torsion_library : core::scoring::mm
mm_torsion_library_citer : core::scoring::mm
mm_torsion_library_citer_pair : core::scoring::mm
mm_torsion_param_set : core::scoring::mm
MMAtomTypeOP : core::chemical
MMAtomTypeSetAP : core::chemical
MMAtomTypeSetCAP : core::chemical
MMAtomTypeSetCOP : core::chemical
MMAtomTypeSetOP : core::chemical
MMBondAngleEnergyAP : core::scoring::methods
MMBondAngleEnergyCAP : core::scoring::methods
MMBondAngleEnergyCOP : core::scoring::methods
MMBondAngleEnergyOP : core::scoring::methods
MMBondAngleLibraryAP : core::scoring::mm
MMBondAngleLibraryCAP : core::scoring::mm
MMBondAngleLibraryCOP : core::scoring::mm
MMBondAngleLibraryOP : core::scoring::mm
MMBondAngleResidueTypeParamSetAP : core::scoring::mm
MMBondAngleResidueTypeParamSetCAP : core::scoring::mm
MMBondAngleResidueTypeParamSetCOP : core::scoring::mm
MMBondAngleResidueTypeParamSetOP : core::scoring::mm
MMBondAngleScoreAP : core::scoring::mm
MMBondAngleScoreCAP : core::scoring::mm
MMBondAngleScoreCOP : core::scoring::mm
MMBondAngleScoreOP : core::scoring::mm
MMBondLengthEnergyAP : core::scoring::methods
MMBondLengthEnergyCAP : core::scoring::methods
MMBondLengthEnergyCOP : core::scoring::methods
MMBondLengthEnergyOP : core::scoring::methods
MMBondLengthLibraryAP : core::scoring::mm
MMBondLengthLibraryCAP : core::scoring::mm
MMBondLengthLibraryCOP : core::scoring::mm
MMBondLengthLibraryOP : core::scoring::mm
MMBondLengthScoreAP : core::scoring::mm
MMBondLengthScoreCAP : core::scoring::mm
MMBondLengthScoreCOP : core::scoring::mm
MMBondLengthScoreOP : core::scoring::mm
mmCIFJobOutputterOP : protocols::jd2
MMLJEnergyInterAP : core::scoring::methods
MMLJEnergyInterCAP : core::scoring::methods
MMLJEnergyInterCOP : core::scoring::methods
MMLJEnergyInterOP : core::scoring::methods
MMLJEnergyIntraAP : core::scoring::methods
MMLJEnergyIntraCAP : core::scoring::methods
MMLJEnergyIntraCOP : core::scoring::methods
MMLJEnergyIntraOP : core::scoring::methods
MMLJEnergyTableAP : core::scoring::mm
MMLJEnergyTableCAP : core::scoring::mm
MMLJEnergyTableCOP : core::scoring::mm
MMLJEnergyTableOP : core::scoring::mm
MMLJLibraryAP : core::scoring::mm
MMLJLibraryCAP : core::scoring::mm
MMLJLibraryCOP : core::scoring::mm
MMLJLibraryOP : core::scoring::mm
MMLJScoreAP : core::scoring::mm
MMLJScoreCAP : core::scoring::mm
MMLJScoreCOP : core::scoring::mm
MMLJScoreOP : core::scoring::mm
mmtaqap_iter : core::scoring::methods
mmtfJobOutputterOP : protocols::jd2
mmTFPoseOutputSpecificationCOP : protocols::jd3::pose_outputters
mmTFPoseOutputSpecificationOP : protocols::jd3::pose_outputters
mmTFPoseOutputterCOP : protocols::jd3::pose_outputters
mmTFPoseOutputterOP : protocols::jd3::pose_outputters
MMTorsionEnergyAP : core::scoring::methods
MMTorsionEnergyCAP : core::scoring::methods
MMTorsionEnergyCOP : core::scoring::methods
MMTorsionEnergyOP : core::scoring::methods
MMTorsionLibraryAP : core::scoring::mm
MMTorsionLibraryCAP : core::scoring::mm
MMTorsionLibraryCOP : core::scoring::mm
MMTorsionLibraryOP : core::scoring::mm
MMTorsionScoreAP : core::scoring::mm
MMTorsionScoreCAP : core::scoring::mm
MMTorsionScoreCOP : core::scoring::mm
MMTorsionScoreOP : core::scoring::mm
ModelCOP : protocols::legacy_sewing
ModelFeaturesCOP : protocols::features
ModelFeaturesOP : protocols::features
ModelFileReaderCOP : protocols::sewing::hashing
ModelFileReaderOP : protocols::sewing::hashing
ModelOP : protocols::legacy_sewing
ModifyAnnealerCOP : protocols::task_operations
ModifyAnnealerOP : protocols::task_operations
ModifyStoredRBConfsCOP : protocols::enzdes
ModifyStoredRBConfsOP : protocols::enzdes
ModifyVariantTypeMoverCOP : protocols::simple_moves
ModifyVariantTypeMoverOP : protocols::simple_moves
ModuleType1COP : core::kinematics::jacobian
ModuleType1OP : core::kinematics::jacobian
Mol : protocols::sparta
MolecularSurfaceCalculatorCOP : core::scoring::sc
MolecularSurfaceCalculatorOP : core::scoring::sc
MolFileIOAtomCOP : core::chemical::sdf
MolFileIOAtomOP : core::chemical::sdf
MolFileIOBondCOP : core::chemical::sdf
MolFileIOBondOP : core::chemical::sdf
MolFileIOGraph : core::chemical::sdf
MolFileIOMoleculeCOP : core::chemical::sdf
MolFileIOMoleculeOP : core::chemical::sdf
Mols : protocols::sparta
MonteCarloCOP : protocols::moves
MonteCarloExceptionConvergeCOP : protocols::moves
MonteCarloExceptionConvergeOP : protocols::moves
MonteCarloInterfaceCOP : protocols::monte_carlo
MonteCarloInterfaceOP : protocols::monte_carlo
MonteCarloOP : protocols::moves
MonteCarloRecoverCOP : protocols::monte_carlo
MonteCarloRecoverOP : protocols::monte_carlo
MonteCarloResetCOP : protocols::monte_carlo
MonteCarloResetOP : protocols::monte_carlo
MonteCarloTestCOP : protocols::monte_carlo
MonteCarloTestOP : protocols::monte_carlo
Motif : protocols::denovo_design::connection
MotifArchitectCOP : protocols::denovo_design::architects
MotifArchitectCOPs : protocols::denovo_design::architects
MotifArchitectOP : protocols::denovo_design::architects
MotifArchitectOPs : protocols::denovo_design::architects
MotifCOP : protocols::denovo_design::connection , protocols::motifs
MotifCOPs : protocols::denovo_design::connection , protocols::motifs
MotifDnaPackerCOP : protocols::motifs
MotifDnaPackerOP : protocols::motifs
MotifDockEnergyCOP : core::energy_methods
MotifDockEnergyOP : core::energy_methods
MotifHashCAP : core::scoring::motif
MotifHashCOP : core::scoring::motif
MotifHashOP : core::scoring::motif
MotifHashRigidScoreCOP : protocols::sic_dock::scores
MotifHashRigidScoreOP : protocols::sic_dock::scores
MotifHashStringMap : core::scoring::motif
MotifHitCOP : protocols::motifs
MotifHitCOPs : protocols::motifs
MotifHitOP : protocols::motifs
MotifHitOPs : protocols::motifs
MotifHitsRotamersOperationCOP : protocols::matdes
MotifHitsRotamersOperationOP : protocols::matdes
MotifLibraryCOP : protocols::motifs
MotifLibraryOP : protocols::motifs
MotifOP : protocols::denovo_design::connection , protocols::motifs
MotifOPs : protocols::denovo_design::connection , protocols::motifs
MotifRotamerSetOperationCOP : core::scoring::motif
MotifRotamerSetOperationOP : core::scoring::motif
MotifScoreFilterCOP : protocols::simple_filters
MotifScoreFilterOP : protocols::simple_filters
MotifScorerCOP : protocols::sewing::scoring
MotifScorerCreatorCOP : protocols::sewing::scoring
MotifScorerCreatorOP : protocols::sewing::scoring
MotifScorerOP : protocols::sewing::scoring
MotifSearchCOP : protocols::motifs
MotifSearchOP : protocols::motifs
MotifSet : core::scoring::motif
MovableGroup : protocols::denovo_design::components
MovableGroups : protocols::denovo_design::components
MoveBeforeFilterCOP : protocols::filters
MoveBeforeFilterOP : protocols::filters
MoveElement : protocols::stepwise::monte_carlo::mover
MoveMapBuilderCOP : protocols::ligand_docking
MoveMapBuilderCOPs : protocols::ligand_docking
MoveMapBuilderOP : protocols::ligand_docking
MoveMapBuilderOPs : protocols::ligand_docking
MoveMapCOP : core::kinematics
MoveMapFactoryCOP : core::select::movemap
MoveMapFactoryOP : core::select::movemap
MoveMapFactoryToNamedMoveMapMoverCOP : protocols::fold_from_loops::movers
MoveMapFactoryToNamedMoveMapMoverOP : protocols::fold_from_loops::movers
MoveMapMoverCOP : protocols::moves
MoveMapMoverOP : protocols::moves
MoveMapOP : core::kinematics
Mover_LoopHashRefineCOP : protocols::loophash
Mover_LoopHashRefineOP : protocols::loophash
MoverAndChunkLibraryJobCOP : protocols::jd3::chunk_library
MoverAndChunkLibraryJobOP : protocols::jd3::chunk_library
MoverAP : protocols::moves
MoverApplyingMoverCOP : protocols::moves
MoverApplyingMoverOP : protocols::moves
MoverCache : protocols::moves
MoverCacheOP : protocols::moves
MoverCAP : protocols::moves
MoverContainerCOP : protocols::moves
MoverContainerOP : protocols::moves
MoverCOP : protocols::moves
MoverCreatorCOP : protocols::moves
MoverCreatorOP : protocols::moves
MoverFactoryCOP : protocols::moves
MoverFactoryOP : protocols::moves
MoverForPoseListCOP : protocols::moves
MoverForPoseListOP : protocols::moves
MoverJobCOP : protocols::jd3::jobs
MoverJobOP : protocols::jd3::jobs
MoverListCAP : protocols::wum
MoverOP : protocols::moves
MPCbetaEnergyCOP : core::energy_methods
MPCbetaEnergyOP : core::energy_methods
MPDockingMoverCOP : protocols::docking::membrane
MPDockingMoverOP : protocols::docking::membrane
MPDockingSetupMoverCOP : protocols::docking::membrane
MPDockingSetupMoverOP : protocols::docking::membrane
MPEnvEnergyCOP : core::energy_methods
MPEnvEnergyOP : core::energy_methods
MPFastRelaxMoverCOP : protocols::relax::membrane
MPFastRelaxMoverOP : protocols::relax::membrane
MPFindInterfaceMoverCOP : protocols::docking::membrane
MPFindInterfaceMoverOP : protocols::docking::membrane
MPHelicalityEnergyCOP : core::energy_methods
MPHelicalityEnergyOP : core::energy_methods
MPI_WorkUnitManagerCOP : protocols::wum
MPI_WorkUnitManagerOP : protocols::wum
MPIBPool_RMSD_COP : protocols::canonical_sampling::mc_convergence_checks
MPIBPool_RMSD_OP : protocols::canonical_sampling::mc_convergence_checks
MpiFileBufferCOP : protocols::jd2
MpiFileBufferOP : protocols::jd2
MPIHPool_RMSD_COP : protocols::canonical_sampling::mc_convergence_checks
MPIHPool_RMSD_OP : protocols::canonical_sampling::mc_convergence_checks
MPIMultistateFitnessFunctionCOP : protocols::pack_daemon
MPIMultistateFitnessFunctionOP : protocols::pack_daemon
MPIPool_RMSD_COP : protocols::canonical_sampling::mc_convergence_checks
MPIPool_RMSD_OP : protocols::canonical_sampling::mc_convergence_checks
MPIWorkPoolJobDistributorCOP : protocols::jd3::job_distributors
MPIWorkPoolJobDistributorOP : protocols::jd3::job_distributors
MPLipidAccessibilityCOP : protocols::membrane
MPLipidAccessibilityOP : protocols::membrane
MPMutateRelaxMoverCOP : protocols::membrane
MPMutateRelaxMoverOP : protocols::membrane
MPNonHelixPenaltyCOP : core::scoring::membrane
MPNonHelixPenaltyOP : core::scoring::membrane
MPPairEnergyCOP : core::energy_methods
MPPairEnergyOP : core::energy_methods
MPQuickRelaxMoverCOP : protocols::membrane
MPQuickRelaxMoverOP : protocols::membrane
MPRangeRelaxMoverCOP : protocols::relax::membrane
MPRangeRelaxMoverOP : protocols::relax::membrane
MPResidueLipophilicityEnergyCOP : core::energy_methods
MPResidueLipophilicityEnergyOP : core::energy_methods
MPSymDockMoverCOP : protocols::symmetric_docking::membrane
MPSymDockMoverOP : protocols::symmetric_docking::membrane
MPTerminiPenaltyCOP : core::scoring::membrane
MPTerminiPenaltyOP : core::scoring::membrane
MPTMProjPenaltyCOP : core::scoring::membrane
MPTMProjPenaltyOP : core::scoring::membrane
MResIDSize : core::scoring::hbonds::graph
MRMoverOP : protocols::hybridization
MRSJobCOP : protocols::multistage_rosetta_scripts
MRSJobOP : protocols::multistage_rosetta_scripts
MRSJobQueenCheckerCOP : protocols::multistage_rosetta_scripts
MRSJobQueenCheckerOP : protocols::multistage_rosetta_scripts
MRSJobQueenCOP : protocols::multistage_rosetta_scripts
MRSJobQueenOP : protocols::multistage_rosetta_scripts
MRSJobSummaryCOP : protocols::multistage_rosetta_scripts
MRSJobSummaryOP : protocols::multistage_rosetta_scripts
MSDMoverCOP : protocols::recon_design
MSDMoverOP : protocols::recon_design
MultiConstraintCOP : core::scoring::constraints
MultiConstraintOP : core::scoring::constraints
MultifuncCOP : core::optimization
MultifuncOP : core::optimization
MultiLoopMoverCOP : protocols::loops::loop_mover
MultiLoopMoverOP : protocols::loops::loop_mover
MultiObjectiveCOP : protocols::mpi_refinement
MultiObjectiveOP : protocols::mpi_refinement
MultiPhosphateSamplerCOP : protocols::stepwise::modeler::rna::phosphate
MultiPhosphateSamplerOP : protocols::stepwise::modeler::rna::phosphate
MultipleDomainMoverOP : protocols::rna::denovo::coarse
MultipleOutputSpecificationCOP : protocols::jd3::output
MultipleOutputSpecificationOP : protocols::jd3::output
MultipleOutputterCOP : protocols::jd3::output
MultipleOutputterOP : protocols::jd3::output
MultiplePoseMoverCOP : protocols::rosetta_scripts
MultiplePoseMoverOP : protocols::rosetta_scripts
MultipleSigmoidsCOP : protocols::calc_taskop_filters
MultipleSigmoidsOP : protocols::calc_taskop_filters
MultiplexedAnnealableGraphCOP : core::pack::interaction_graph
MultiplexedAnnealableGraphOP : core::pack::interaction_graph
MultipoleElecPoseInfoCOP : core::scoring
MultipoleElecPoseInfoOP : core::scoring
MultipoleElecPotentialCOP : core::scoring
MultipoleElecPotentialOP : core::scoring
MultipoleElecResidueInfoCOP : core::scoring
MultipoleElecResidueInfoOP : core::scoring
MultipoleElecResPairMinDataCOP : core::energy_methods
MultipoleElecResPairMinDataOP : core::energy_methods
MultipoleElecRotamerSetInfoOP : core::scoring
MultipoleParameterOP : core::scoring
MultiProbePerSphereAccumulatorOP : core::scoring::packstat
MultiProbePoseAccumulatorOP : core::scoring::packstat
MultiStateAggregateFunctionCOP : protocols::multistate_design
MultistateAggregateFunctionCOP : protocols::pack_daemon
MultiStateAggregateFunctionOP : protocols::multistate_design
MultistateAggregateFunctionOP : protocols::pack_daemon
MultistateFitnessFunctionCOP : protocols::pack_daemon
MultistateFitnessFunctionOP : protocols::pack_daemon
MultiStatePackerCOP : protocols::multistate_design
MultiStatePackerOP : protocols::multistate_design
MultiThreadedJobDistributorCOP : protocols::jd3::job_distributors
MultiThreadedJobDistributorOP : protocols::jd3::job_distributors
MultiThreadingJobCOP : protocols::jd2
MultiThreadingJobOP : protocols::jd2
Multivec : core::optimization
MutableChiRecordCOP : core::chemical
MutableChiRecordOP : core::chemical
MutableICoorRecordCOP : core::chemical
MutableICoorRecordOP : core::chemical
MutableResidueTypeCOP : core::chemical
MutableResidueTypeCOPs : core::chemical
MutableResidueTypeOP : core::chemical
MutableResidueTypeOPs : core::chemical
Mutate1RandomizerCOP : protocols::genetic_algorithm
Mutate1RandomizerOP : protocols::genetic_algorithm
MutateFrameworkForClusterCOP : protocols::antibody::design
MutateFrameworkForClusterOP : protocols::antibody::design
MutateResidueCOP : protocols::simple_moves
MutateResidueOP : protocols::simple_moves
MutationSet : protocols::task_operations
MutationSetDesignOperationCOP : protocols::task_operations
MutationSetDesignOperationOP : protocols::task_operations
MutationsFilterCOP : protocols::simple_filters
MutationsFilterOP : protocols::simple_filters